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The map label for this gene is ycaD [C]

Identifier: 99081439

GI number: 99081439

Start: 1709078

End: 1710358

Strand: Reverse

Name: ycaD [C]

Synonym: TM1040_1598

Alternate gene names: 99081439

Gene position: 1710358-1709078 (Counterclockwise)

Preceding gene: 99081440

Following gene: 99081435

Centisome position: 53.43

GC content: 60.66

Gene sequence:

>1281_bases
ATGATCAACATGCTGGCCTCCGTTTGGGCGCTCCTGGCCGGAGTCGTGCTCATCATGCTGGGCAACGGGATGCATTTTAC
CTTGATGGGGCTGCGTGGCGGGGTCGAGGGGTTCTCCTCGGCCGAGCTCTCCATCGTGACCTCTGGCTATTTCCTCGGCT
TTTTATCAGGCGCGCGCTTTACACCGCTCCTGATCCAGCGCGTGGGTCATGTGCGGGTGTTTGCAGCGCTCGGCAGCTTT
ATCTCGGCGGCGCTCATTGCCTTTACGCTATGGGTCGAGCCCTGGACATGGACGCTCCTGCGGATCTTGATCGGTTTTTG
CATGTCTGGGATTTATGTGGTTGCCGAAAGCTGGCTCAACAATTCCACCAGCAATGAGAACCGGGGCAAGATGCTCTCGG
CCTACATGCTGGCGCAGACACTAGGCATCATCGGCGCGCAGGGTTTGCTGACGCTTGGGGATGCTGCCAATGCTGCGCTG
TTTATTGGCGCGTCGATCCTGGTGTCCATTTCCTTTGCGCCGATTTTGCTGTCGATCCAGCCCGCCCCCCTCGTCGAAGT
GACCAAACCCGGTGGTTTGAAGGATCTTTTTGCAGCCTCGCCGCTTGGGACCGCAGGTATTTTTGTGCTGGGCAGTATCT
ATGCCAGCCAGTCCGGCATGGGCGCGGTGTTTGGCAGCGAGATCGGCCTGAGCGCCAATCAGATCGCGCTGTTCGTCGCG
ATGCTGTTTGGTGGTGCCTTGTTCATGCAGGTGCCGATTGGCTGGCTGTCGGACCGGCTGGATCGGCGCAAGGTCATCTG
TGGCACCGCGGCGCTTGGGGCCGCCGCCTGTGGACTTGGCTGGTTGGCGCAGAGCCCGCCTGCCTGGCTCGGGGTTGACC
CGCTTGTTCCCATTATGGCGGCGGCCTTTCTCGCAGGGGGCATGACAACGCCGCTCTATGCGCTCTTGCTGGCCTATACC
AATGACAATGTCGCCGCCGAGGATATGCCCGCGATCTCGGGCGGGCTGGTCTTTACGTTTGGGCTTGGTGCGATCATCGG
GCCGATTGCGGTTGGTCTGGCGATGAACGCCACAGGTCCCTTTGCATTCTGGATGGTGCTTGGCGCTGCCTTCCTGATGA
TCACGCTCTATGCGCTCTACCGGATGTCGCAGAGTGAGGCGACGCCGGTCTCTGAGACCGACGCCTATGTCAACCTCGTG
CCTTCAGCGACCATTGTGGCGGTTGAGGATGCAACCACCTGGGCGGCAGAGAATGCAGACGTGGACCCGTCTGAGCCCTA
G

Upstream 100 bases:

>100_bases
ATGAGAGCCGATCCAGCCCCCACAGACGTGCAGATTTTGAAACTGCGCGCGTTTGATGGCTATCTGGGAGGATCTGTGAC
GCCATAAAAGGAACGCTGTG

Downstream 100 bases:

>100_bases
AGCGCCTCAGGTGATGTCAGAACTTTGCCAGACGTTGCGCGTGGTGAGATAGCTCTCAAGCCCTTCGGTGCCGCCTTCAC
GCCCGTAACCACTGGATTTC

Product: twin-arginine translocation pathway signal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 426

Protein sequence:

>426_residues
MINMLASVWALLAGVVLIMLGNGMHFTLMGLRGGVEGFSSAELSIVTSGYFLGFLSGARFTPLLIQRVGHVRVFAALGSF
ISAALIAFTLWVEPWTWTLLRILIGFCMSGIYVVAESWLNNSTSNENRGKMLSAYMLAQTLGIIGAQGLLTLGDAANAAL
FIGASILVSISFAPILLSIQPAPLVEVTKPGGLKDLFAASPLGTAGIFVLGSIYASQSGMGAVFGSEIGLSANQIALFVA
MLFGGALFMQVPIGWLSDRLDRRKVICGTAALGAAACGLGWLAQSPPAWLGVDPLVPIMAAAFLAGGMTTPLYALLLAYT
NDNVAAEDMPAISGGLVFTFGLGAIIGPIAVGLAMNATGPFAFWMVLGAAFLMITLYALYRMSQSEATPVSETDAYVNLV
PSATIVAVEDATTWAAENADVDPSEP

Sequences:

>Translated_426_residues
MINMLASVWALLAGVVLIMLGNGMHFTLMGLRGGVEGFSSAELSIVTSGYFLGFLSGARFTPLLIQRVGHVRVFAALGSF
ISAALIAFTLWVEPWTWTLLRILIGFCMSGIYVVAESWLNNSTSNENRGKMLSAYMLAQTLGIIGAQGLLTLGDAANAAL
FIGASILVSISFAPILLSIQPAPLVEVTKPGGLKDLFAASPLGTAGIFVLGSIYASQSGMGAVFGSEIGLSANQIALFVA
MLFGGALFMQVPIGWLSDRLDRRKVICGTAALGAAACGLGWLAQSPPAWLGVDPLVPIMAAAFLAGGMTTPLYALLLAYT
NDNVAAEDMPAISGGLVFTFGLGAIIGPIAVGLAMNATGPFAFWMVLGAAFLMITLYALYRMSQSEATPVSETDAYVNLV
PSATIVAVEDATTWAAENADVDPSEP
>Mature_426_residues
MINMLASVWALLAGVVLIMLGNGMHFTLMGLRGGVEGFSSAELSIVTSGYFLGFLSGARFTPLLIQRVGHVRVFAALGSF
ISAALIAFTLWVEPWTWTLLRILIGFCMSGIYVVAESWLNNSTSNENRGKMLSAYMLAQTLGIIGAQGLLTLGDAANAAL
FIGASILVSISFAPILLSIQPAPLVEVTKPGGLKDLFAASPLGTAGIFVLGSIYASQSGMGAVFGSEIGLSANQIALFVA
MLFGGALFMQVPIGWLSDRLDRRKVICGTAALGAAACGLGWLAQSPPAWLGVDPLVPIMAAAFLAGGMTTPLYALLLAYT
NDNVAAEDMPAISGGLVFTFGLGAIIGPIAVGLAMNATGPFAFWMVLGAAFLMITLYALYRMSQSEATPVSETDAYVNLV
PSATIVAVEDATTWAAENADVDPSEP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=365, Percent_Identity=27.1232876712329, Blast_Score=89, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 44309; Mature: 44309

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINMLASVWALLAGVVLIMLGNGMHFTLMGLRGGVEGFSSAELSIVTSGYFLGFLSGARF
CCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEEEECHHHHHHHCCCCH
TPLLIQRVGHVRVFAALGSFISAALIAFTLWVEPWTWTLLRILIGFCMSGIYVVAESWLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
NSTSNENRGKMLSAYMLAQTLGIIGAQGLLTLGDAANAALFIGASILVSISFAPILLSIQ
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHEEEEEC
PAPLVEVTKPGGLKDLFAASPLGTAGIFVLGSIYASQSGMGAVFGSEIGLSANQIALFVA
CCCCEEECCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHH
MLFGGALFMQVPIGWLSDRLDRRKVICGTAALGAAACGLGWLAQSPPAWLGVDPLVPIMA
HHHCCHHEECCCHHHHHHHHHCCCEEECHHHHHHHHHCCHHHCCCCCCCCCCCHHHHHHH
AAFLAGGMTTPLYALLLAYTNDNVAAEDMPAISGGLVFTFGLGAIIGPIAVGLAMNATGP
HHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH
FAFWMVLGAAFLMITLYALYRMSQSEATPVSETDAYVNLVPSATIVAVEDATTWAAENAD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEEEEECCCCCCCCCCC
VDPSEP
CCCCCC
>Mature Secondary Structure
MINMLASVWALLAGVVLIMLGNGMHFTLMGLRGGVEGFSSAELSIVTSGYFLGFLSGARF
CCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEEEECHHHHHHHCCCCH
TPLLIQRVGHVRVFAALGSFISAALIAFTLWVEPWTWTLLRILIGFCMSGIYVVAESWLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
NSTSNENRGKMLSAYMLAQTLGIIGAQGLLTLGDAANAALFIGASILVSISFAPILLSIQ
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHEEEEEC
PAPLVEVTKPGGLKDLFAASPLGTAGIFVLGSIYASQSGMGAVFGSEIGLSANQIALFVA
CCCCEEECCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHH
MLFGGALFMQVPIGWLSDRLDRRKVICGTAALGAAACGLGWLAQSPPAWLGVDPLVPIMA
HHHCCHHEECCCHHHHHHHHHCCCEEECHHHHHHHHHCCHHHCCCCCCCCCCCHHHHHHH
AAFLAGGMTTPLYALLLAYTNDNVAAEDMPAISGGLVFTFGLGAIIGPIAVGLAMNATGP
HHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH
FAFWMVLGAAFLMITLYALYRMSQSEATPVSETDAYVNLVPSATIVAVEDATTWAAENAD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEEEEECCCCCCCCCCC
VDPSEP
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]