| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is dam [H]
Identifier: 99081428
GI number: 99081428
Start: 1695177
End: 1696058
Strand: Reverse
Name: dam [H]
Synonym: TM1040_1587
Alternate gene names: 99081428
Gene position: 1696058-1695177 (Counterclockwise)
Preceding gene: 99081429
Following gene: 99081426
Centisome position: 52.99
GC content: 59.41
Gene sequence:
>882_bases ATGGCAATAGAGATACCAGTTCCAGCCGTCGCGCCCGCTTTGCCAAAACCCTTCAAGACGCAGCTTCTCAAATGGGTGGG CAACAAGCAGCGCTTTGCCCATGAAATCGTTGCACATCTTCCCAAGGACTACGGCACCTATTTTGAACCGTTTCTGGGCG CAGGCGGGGTGATGGCGAACCTGCAACCACATCGCGCGCTGGGCTCAGACATCTATCCTCCCCTGGTCGAGATCTGGCAG GCGCTGCGCGAGGACCCCGCGCGCCTCAACGCGTGGTATCAGAGCCGCTATGACCGCTTCATGACCGGTGACAGGGTTGC CACCTATGAGGCGATCAAGGCCCGCTACAATGACACCCCCAACGGTGCCGATTTCCTGTTTCTCTGCCGCGCCTGTTACG GTGGGGTGGTGCGCTTTCGTCGCAAGGACGGATATATGTCGACCCCCTGCGGCAGCCACCCGGTGATGAAACCTCACAAA TTTGCCGAACGGGTCGAGATGTGGCGCGCGCGCATGAAAGGCGCAAGTTTTGCCTGTCTGGACTACCGCTCTGCCATGGC GCAGGCGCGCGCGGGCGATGTGATTTACTGCGACCCGCCTTACGCTCATTCGCAAACCATCCTTTACGGCGCCCAGGCGT TTCGCCTCGAAGAATTGTTTGCGGCGATCGCGGCCTGCAAGGCACGCGGCGTCAGGGTCGCGCTTTCGATCGATGGCACC AAGAAATCCGGCGATATCTATTGCGACATCGCCATCCCTGAGGGTCTGTTTGAACGCGAGATCCTCGTCAATATGGGGCA ATCCATGCTCAAACGCTTTCAGATGAGCGGGCAGCGCATGGAGAGCGAAGCCGTGCGCGACCGCCTGCTTTTGACCTACT AA
Upstream 100 bases:
>100_bases GCAGGTGCCCCCTTTTTTTGTCAGCCCGCGTCCCACTGGCAGATTCCGCGCGGATAGCGTATGCGAAACACACCGTGCAT CAAGAAACCAGAGGGAGCGG
Downstream 100 bases:
>100_bases GTCCTTCTTCTAACGAGAAATATCCCGGGGGAGGCCCGACAAGGGCCGGGGGCAGCGCCCCCAGGGCTTCTGCGCTGCGT TCACGCGTTCAAGAAACCGC
Product: DNA adenine methylase Dam
Products: NA
Alternate protein names: DNA adenine methyltransferase; Deoxyadenosyl-methyltransferase; M.VchADam [H]
Number of amino acids: Translated: 293; Mature: 292
Protein sequence:
>293_residues MAIEIPVPAVAPALPKPFKTQLLKWVGNKQRFAHEIVAHLPKDYGTYFEPFLGAGGVMANLQPHRALGSDIYPPLVEIWQ ALREDPARLNAWYQSRYDRFMTGDRVATYEAIKARYNDTPNGADFLFLCRACYGGVVRFRRKDGYMSTPCGSHPVMKPHK FAERVEMWRARMKGASFACLDYRSAMAQARAGDVIYCDPPYAHSQTILYGAQAFRLEELFAAIAACKARGVRVALSIDGT KKSGDIYCDIAIPEGLFEREILVNMGQSMLKRFQMSGQRMESEAVRDRLLLTY
Sequences:
>Translated_293_residues MAIEIPVPAVAPALPKPFKTQLLKWVGNKQRFAHEIVAHLPKDYGTYFEPFLGAGGVMANLQPHRALGSDIYPPLVEIWQ ALREDPARLNAWYQSRYDRFMTGDRVATYEAIKARYNDTPNGADFLFLCRACYGGVVRFRRKDGYMSTPCGSHPVMKPHK FAERVEMWRARMKGASFACLDYRSAMAQARAGDVIYCDPPYAHSQTILYGAQAFRLEELFAAIAACKARGVRVALSIDGT KKSGDIYCDIAIPEGLFEREILVNMGQSMLKRFQMSGQRMESEAVRDRLLLTY >Mature_292_residues AIEIPVPAVAPALPKPFKTQLLKWVGNKQRFAHEIVAHLPKDYGTYFEPFLGAGGVMANLQPHRALGSDIYPPLVEIWQA LREDPARLNAWYQSRYDRFMTGDRVATYEAIKARYNDTPNGADFLFLCRACYGGVVRFRRKDGYMSTPCGSHPVMKPHKF AERVEMWRARMKGASFACLDYRSAMAQARAGDVIYCDPPYAHSQTILYGAQAFRLEELFAAIAACKARGVRVALSIDGTK KSGDIYCDIAIPEGLFEREILVNMGQSMLKRFQMSGQRMESEAVRDRLLLTY
Specific function: Methylates DNA within the sequence GATC. Directly involved in methyl-directed DNA mismatch repair [H]
COG id: COG0338
COG function: function code L; Site-specific DNA methylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1789789, Length=206, Percent_Identity=28.6407766990291, Blast_Score=80, Evalue=2e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023095 - InterPro: IPR002052 - InterPro: IPR012327 [H]
Pfam domain/function: PF02086 MethyltransfD12 [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 33080; Mature: 32948
Theoretical pI: Translated: 9.25; Mature: 9.25
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIEIPVPAVAPALPKPFKTQLLKWVGNKQRFAHEIVAHLPKDYGTYFEPFLGAGGVMAN CEEECCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCC LQPHRALGSDIYPPLVEIWQALREDPARLNAWYQSRYDRFMTGDRVATYEAIKARYNDTP CCHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC NGADFLFLCRACYGGVVRFRRKDGYMSTPCGSHPVMKPHKFAERVEMWRARMKGASFACL CCHHHHHHHHHHHHHHHEEHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEHH DYRSAMAQARAGDVIYCDPPYAHSQTILYGAQAFRLEELFAAIAACKARGVRVALSIDGT HHHHHHHHHHCCCEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC KKSGDIYCDIAIPEGLFEREILVNMGQSMLKRFQMSGQRMESEAVRDRLLLTY CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC >Mature Secondary Structure AIEIPVPAVAPALPKPFKTQLLKWVGNKQRFAHEIVAHLPKDYGTYFEPFLGAGGVMAN EEECCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCC LQPHRALGSDIYPPLVEIWQALREDPARLNAWYQSRYDRFMTGDRVATYEAIKARYNDTP CCHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC NGADFLFLCRACYGGVVRFRRKDGYMSTPCGSHPVMKPHKFAERVEMWRARMKGASFACL CCHHHHHHHHHHHHHHHEEHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEHH DYRSAMAQARAGDVIYCDPPYAHSQTILYGAQAFRLEELFAAIAACKARGVRVALSIDGT HHHHHHHHHHCCCEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC KKSGDIYCDIAIPEGLFEREILVNMGQSMLKRFQMSGQRMESEAVRDRLLLTY CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11705940 [H]