| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081363
Identifier: 99081363
GI number: 99081363
Start: 1627146
End: 1627532
Strand: Reverse
Name: 99081363
Synonym: TM1040_1522
Alternate gene names: NA
Gene position: 1627532-1627146 (Counterclockwise)
Preceding gene: 99081364
Following gene: 99081362
Centisome position: 50.85
GC content: 59.43
Gene sequence:
>387_bases ATGGGAATCCTGAATTCGCTTTTGCAGGCTGTGACTTGGTGGAATGGCGCCACGCTCAACACAATGATCTACACCCGCCG CAAGGGGGTTAAGGTCGGTGAGGACGATCAGGGCAACGTATTCTATCGCAACGCAGATGACAGCCGTCGCTGGGTGATCT TCAATGGCGAGGCAGAGGCGTCGCGCGTCAGTGCCGACTGGCATGGCTGGTTGCACCGCACTTTTAACGAAGTGCCGAGC GAGAAGCCGCTGAAACACAAGGATTGGGAAAAGCCGCATCAGGAAAACCTGACTGGCACCATGCTGGCGTACGCGCCGGC GGGCTCGATCCGCGCGGGTGGCACGCCAAAACCGCGCAGCGATTACGAGGCGTGGAGCCCCGAATAA
Upstream 100 bases:
>100_bases TCTTGCTGTTTCCCGCCGCTCTATTCACCACTTGACCGCGAACCACTGGACCTCGGGTCGAGAATGGGCCATATCGGGGG AGAGATTTTCGGAGGGACCC
Downstream 100 bases:
>100_bases GTTTACGCCAAAGGGACGCGCGGATATTGCCCGACGTCCCTTTGCGATCTGGCCAAAAGGCAGGTTTGTAATGACCCATT CCACAACCGAAGTGCTGACC
Product: NADH dehydrogenase
Products: NA
Alternate protein names: NADHUbiquinone Oxidoreductase; NADH-Ubiquinone Oxidoreductase; NADHUbiquinone Oxidoreductase Subunit; NDUFA12 Family NADH Ubiquinone Oxidoreductase Subunit; NADH Protein; NADH-Ubiquinone Oxidoreductase Chain
Number of amino acids: Translated: 128; Mature: 127
Protein sequence:
>128_residues MGILNSLLQAVTWWNGATLNTMIYTRRKGVKVGEDDQGNVFYRNADDSRRWVIFNGEAEASRVSADWHGWLHRTFNEVPS EKPLKHKDWEKPHQENLTGTMLAYAPAGSIRAGGTPKPRSDYEAWSPE
Sequences:
>Translated_128_residues MGILNSLLQAVTWWNGATLNTMIYTRRKGVKVGEDDQGNVFYRNADDSRRWVIFNGEAEASRVSADWHGWLHRTFNEVPS EKPLKHKDWEKPHQENLTGTMLAYAPAGSIRAGGTPKPRSDYEAWSPE >Mature_127_residues GILNSLLQAVTWWNGATLNTMIYTRRKGVKVGEDDQGNVFYRNADDSRRWVIFNGEAEASRVSADWHGWLHRTFNEVPSE KPLKHKDWEKPHQENLTGTMLAYAPAGSIRAGGTPKPRSDYEAWSPE
Specific function: Unknown
COG id: COG3761
COG function: function code C; NADH:ubiquinone oxidoreductase 17.2 kD subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14572; Mature: 14441
Theoretical pI: Translated: 7.84; Mature: 7.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGILNSLLQAVTWWNGATLNTMIYTRRKGVKVGEDDQGNVFYRNADDSRRWVIFNGEAEA CCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCC SRVSADWHGWLHRTFNEVPSEKPLKHKDWEKPHQENLTGTMLAYAPAGSIRAGGTPKPRS CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC DYEAWSPE CCCCCCCC >Mature Secondary Structure GILNSLLQAVTWWNGATLNTMIYTRRKGVKVGEDDQGNVFYRNADDSRRWVIFNGEAEA CHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCC SRVSADWHGWLHRTFNEVPSEKPLKHKDWEKPHQENLTGTMLAYAPAGSIRAGGTPKPRS CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC DYEAWSPE CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA