Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081363

Identifier: 99081363

GI number: 99081363

Start: 1627146

End: 1627532

Strand: Reverse

Name: 99081363

Synonym: TM1040_1522

Alternate gene names: NA

Gene position: 1627532-1627146 (Counterclockwise)

Preceding gene: 99081364

Following gene: 99081362

Centisome position: 50.85

GC content: 59.43

Gene sequence:

>387_bases
ATGGGAATCCTGAATTCGCTTTTGCAGGCTGTGACTTGGTGGAATGGCGCCACGCTCAACACAATGATCTACACCCGCCG
CAAGGGGGTTAAGGTCGGTGAGGACGATCAGGGCAACGTATTCTATCGCAACGCAGATGACAGCCGTCGCTGGGTGATCT
TCAATGGCGAGGCAGAGGCGTCGCGCGTCAGTGCCGACTGGCATGGCTGGTTGCACCGCACTTTTAACGAAGTGCCGAGC
GAGAAGCCGCTGAAACACAAGGATTGGGAAAAGCCGCATCAGGAAAACCTGACTGGCACCATGCTGGCGTACGCGCCGGC
GGGCTCGATCCGCGCGGGTGGCACGCCAAAACCGCGCAGCGATTACGAGGCGTGGAGCCCCGAATAA

Upstream 100 bases:

>100_bases
TCTTGCTGTTTCCCGCCGCTCTATTCACCACTTGACCGCGAACCACTGGACCTCGGGTCGAGAATGGGCCATATCGGGGG
AGAGATTTTCGGAGGGACCC

Downstream 100 bases:

>100_bases
GTTTACGCCAAAGGGACGCGCGGATATTGCCCGACGTCCCTTTGCGATCTGGCCAAAAGGCAGGTTTGTAATGACCCATT
CCACAACCGAAGTGCTGACC

Product: NADH dehydrogenase

Products: NA

Alternate protein names: NADHUbiquinone Oxidoreductase; NADH-Ubiquinone Oxidoreductase; NADHUbiquinone Oxidoreductase Subunit; NDUFA12 Family NADH Ubiquinone Oxidoreductase Subunit; NADH Protein; NADH-Ubiquinone Oxidoreductase Chain

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MGILNSLLQAVTWWNGATLNTMIYTRRKGVKVGEDDQGNVFYRNADDSRRWVIFNGEAEASRVSADWHGWLHRTFNEVPS
EKPLKHKDWEKPHQENLTGTMLAYAPAGSIRAGGTPKPRSDYEAWSPE

Sequences:

>Translated_128_residues
MGILNSLLQAVTWWNGATLNTMIYTRRKGVKVGEDDQGNVFYRNADDSRRWVIFNGEAEASRVSADWHGWLHRTFNEVPS
EKPLKHKDWEKPHQENLTGTMLAYAPAGSIRAGGTPKPRSDYEAWSPE
>Mature_127_residues
GILNSLLQAVTWWNGATLNTMIYTRRKGVKVGEDDQGNVFYRNADDSRRWVIFNGEAEASRVSADWHGWLHRTFNEVPSE
KPLKHKDWEKPHQENLTGTMLAYAPAGSIRAGGTPKPRSDYEAWSPE

Specific function: Unknown

COG id: COG3761

COG function: function code C; NADH:ubiquinone oxidoreductase 17.2 kD subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14572; Mature: 14441

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGILNSLLQAVTWWNGATLNTMIYTRRKGVKVGEDDQGNVFYRNADDSRRWVIFNGEAEA
CCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCC
SRVSADWHGWLHRTFNEVPSEKPLKHKDWEKPHQENLTGTMLAYAPAGSIRAGGTPKPRS
CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC
DYEAWSPE
CCCCCCCC
>Mature Secondary Structure 
GILNSLLQAVTWWNGATLNTMIYTRRKGVKVGEDDQGNVFYRNADDSRRWVIFNGEAEA
CHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCC
SRVSADWHGWLHRTFNEVPSEKPLKHKDWEKPHQENLTGTMLAYAPAGSIRAGGTPKPRS
CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC
DYEAWSPE
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA