| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is braE [H]
Identifier: 99081354
GI number: 99081354
Start: 1620001
End: 1621200
Strand: Direct
Name: braE [H]
Synonym: TM1040_1513
Alternate gene names: 99081354
Gene position: 1620001-1621200 (Clockwise)
Preceding gene: 99081353
Following gene: 99081355
Centisome position: 50.61
GC content: 58.42
Gene sequence:
>1200_bases ATGTTCAAACTGGAAAAAACCGATCTCAAACTTCTCATGATCGTGGCTGTTCTGACCATGTTCGCCCCGTTCATCCTGAA CCCCTTCCCCGTCGACAGCGCCATGGCGCAGTTCAACGCGGGCTATCCGGACCTGATGCAGCGCTTTGTGATCTTTGGTG TCTTTGCCATCGGGTTCAACATCCTCTTTGGCCTCACCGGCTACCTCTCCTTTGGTCACGCGGCCTTTCTCGGGGTGGGG TCCTATGCGGCCGTCTGGATGTTCAAACTGCTGAGCATGAACGTGCTGCCCGCCATCGTGCTGTCGGTTCTGGTCTCCGG TCTCTTTTCGCTGGTGATTGGCTTTGTGAGCCTGCGGCGCTCGGGGATCTACTTCTCCATTCTGACTCTGGCCTTTGCCC AGATGATGTTTGCGCTGGCCTATTCGGTTCTGACCCCGATCACGGGCGGTGAAACGGGCCTGCAGTTGGCGCTGGATGAT CCGCGCATTCTCGGCGCCAGCCAGACCGCCGAGGGCAATATCCCGGTCCCGAGCCTCTTTGGGCTGGAGATGCGCGACAG TGCAGAACTGGTGATCGGCGGCTGGTCCTTTACCTTCAACTTTGGCTACTACTTCTGCGCGCTGGTGATGCTTGCATCGT TCTATCTCGCGATCCGCATCTTCCGCTCGCCCTTTGGGATGATGCTGCGGGCGGTGAAATCCAACCAGCAGCGGATGAAC TACACTGGTCTCAACTCCCGTCCCTATATGCTTGCGGCCTTTGTGATCTCTGGCATGTACGCGGGGCTCGCCGGTGGTCT CATGGCCTCCATGGACCCGCTGGCTGGCGCGGAGCGGATGCAGTGGACCGCATCGGGCGAAGTCGTTCTGATGACCATCC TTGGTGGGGCTGGCACGCTGATCGGTCCGGTTCTGGGCGCAGGCTTCATCAAATACTTCGAGAACATCTTCTCCAAGATC AACGACAACGTGCTGCACAGCTGGTTCAGCTTCCTGCCGGATGGGCTTGAGGACTTTGTGGTTTTCATCATCCACCCCTT TATCGGCAAGGGCTGGCATCTGACGCTTGGCATCCTCTTCATGCTGGTGGTGATCTACCTCCCCGGCGGACTTGTGGAAG GCGGACAGCGGGTCGGAAACTGGCTCAAGGGGCGCAAGAAGTCTGACGCCAAGCAGAGCAACACCAATCCGGCGGAATAA
Upstream 100 bases:
>100_bases GGCATCAACCAGGTCATCATCTATCTGGTCGCCATCATCATTCTTCTCACCCGCCCCCGTGGATTGATGGGCCGCAAAGG CGTGATGGAGGACTAAGGAC
Downstream 100 bases:
>100_bases GGAGACCCTCATGAGCATTCTCGAAGTCAAAAACGTCGGCAAACGCTTTGGTGGCCTCCAGGCGCTGTCGGATGTGAACC TCTCCGTCAAGGAGAACTCG
Product: inner-membrane translocator
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 399; Mature: 399
Protein sequence:
>399_residues MFKLEKTDLKLLMIVAVLTMFAPFILNPFPVDSAMAQFNAGYPDLMQRFVIFGVFAIGFNILFGLTGYLSFGHAAFLGVG SYAAVWMFKLLSMNVLPAIVLSVLVSGLFSLVIGFVSLRRSGIYFSILTLAFAQMMFALAYSVLTPITGGETGLQLALDD PRILGASQTAEGNIPVPSLFGLEMRDSAELVIGGWSFTFNFGYYFCALVMLASFYLAIRIFRSPFGMMLRAVKSNQQRMN YTGLNSRPYMLAAFVISGMYAGLAGGLMASMDPLAGAERMQWTASGEVVLMTILGGAGTLIGPVLGAGFIKYFENIFSKI NDNVLHSWFSFLPDGLEDFVVFIIHPFIGKGWHLTLGILFMLVVIYLPGGLVEGGQRVGNWLKGRKKSDAKQSNTNPAE
Sequences:
>Translated_399_residues MFKLEKTDLKLLMIVAVLTMFAPFILNPFPVDSAMAQFNAGYPDLMQRFVIFGVFAIGFNILFGLTGYLSFGHAAFLGVG SYAAVWMFKLLSMNVLPAIVLSVLVSGLFSLVIGFVSLRRSGIYFSILTLAFAQMMFALAYSVLTPITGGETGLQLALDD PRILGASQTAEGNIPVPSLFGLEMRDSAELVIGGWSFTFNFGYYFCALVMLASFYLAIRIFRSPFGMMLRAVKSNQQRMN YTGLNSRPYMLAAFVISGMYAGLAGGLMASMDPLAGAERMQWTASGEVVLMTILGGAGTLIGPVLGAGFIKYFENIFSKI NDNVLHSWFSFLPDGLEDFVVFIIHPFIGKGWHLTLGILFMLVVIYLPGGLVEGGQRVGNWLKGRKKSDAKQSNTNPAE >Mature_399_residues MFKLEKTDLKLLMIVAVLTMFAPFILNPFPVDSAMAQFNAGYPDLMQRFVIFGVFAIGFNILFGLTGYLSFGHAAFLGVG SYAAVWMFKLLSMNVLPAIVLSVLVSGLFSLVIGFVSLRRSGIYFSILTLAFAQMMFALAYSVLTPITGGETGLQLALDD PRILGASQTAEGNIPVPSLFGLEMRDSAELVIGGWSFTFNFGYYFCALVMLASFYLAIRIFRSPFGMMLRAVKSNQQRMN YTGLNSRPYMLAAFVISGMYAGLAGGLMASMDPLAGAERMQWTASGEVVLMTILGGAGTLIGPVLGAGFIKYFENIFSKI NDNVLHSWFSFLPDGLEDFVVFIIHPFIGKGWHLTLGILFMLVVIYLPGGLVEGGQRVGNWLKGRKKSDAKQSNTNPAE
Specific function: Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I), which is operative without Na(+) and is specific for alanine and threonine, in addition to branched-chain amino acids [H]
COG id: COG4177
COG function: function code E; ABC-type branched-chain amino acid transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789865, Length=297, Percent_Identity=25.9259259259259, Blast_Score=87, Evalue=2e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001851 - InterPro: IPR021807 [H]
Pfam domain/function: PF02653 BPD_transp_2; PF11862 DUF3382 [H]
EC number: NA
Molecular weight: Translated: 43541; Mature: 43541
Theoretical pI: Translated: 9.11; Mature: 9.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 5.3 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 5.3 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFKLEKTDLKLLMIVAVLTMFAPFILNPFPVDSAMAQFNAGYPDLMQRFVIFGVFAIGFN CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH ILFGLTGYLSFGHAAFLGVGSYAAVWMFKLLSMNVLPAIVLSVLVSGLFSLVIGFVSLRR HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SGIYFSILTLAFAQMMFALAYSVLTPITGGETGLQLALDDPRILGASQTAEGNIPVPSLF CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEECCCCCCCCCCCCCCCC GLEMRDSAELVIGGWSFTFNFGYYFCALVMLASFYLAIRIFRSPFGMMLRAVKSNQQRMN CCCCCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHCC YTGLNSRPYMLAAFVISGMYAGLAGGLMASMDPLAGAERMQWTASGEVVLMTILGGAGTL CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCEEECCCCEEEEEEECCCHHH IGPVLGAGFIKYFENIFSKINDNVLHSWFSFLPDGLEDFVVFIIHPFIGKGWHLTLGILF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHH MLVVIYLPGGLVEGGQRVGNWLKGRKKSDAKQSNTNPAE HHHHHHCCCCHHCCHHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure MFKLEKTDLKLLMIVAVLTMFAPFILNPFPVDSAMAQFNAGYPDLMQRFVIFGVFAIGFN CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH ILFGLTGYLSFGHAAFLGVGSYAAVWMFKLLSMNVLPAIVLSVLVSGLFSLVIGFVSLRR HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SGIYFSILTLAFAQMMFALAYSVLTPITGGETGLQLALDDPRILGASQTAEGNIPVPSLF CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEECCCCCCCCCCCCCCCC GLEMRDSAELVIGGWSFTFNFGYYFCALVMLASFYLAIRIFRSPFGMMLRAVKSNQQRMN CCCCCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHCC YTGLNSRPYMLAAFVISGMYAGLAGGLMASMDPLAGAERMQWTASGEVVLMTILGGAGTL CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCEEECCCCEEEEEEECCCHHH IGPVLGAGFIKYFENIFSKINDNVLHSWFSFLPDGLEDFVVFIIHPFIGKGWHLTLGILF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHH MLVVIYLPGGLVEGGQRVGNWLKGRKKSDAKQSNTNPAE HHHHHHCCCCHHCCHHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2120183; 10984043 [H]