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The map label for this gene is rfbH [H]

Identifier: 99081324

GI number: 99081324

Start: 1584788

End: 1585987

Strand: Reverse

Name: rfbH [H]

Synonym: TM1040_1483

Alternate gene names: 99081324

Gene position: 1585987-1584788 (Counterclockwise)

Preceding gene: 99081325

Following gene: 99081323

Centisome position: 49.55

GC content: 57.33

Gene sequence:

>1200_bases
GTGACCACCTCCAAAACAGTTAAACCGGTTCTTCTGGCGGAAGAGACGATCTCTCAGGACGACCTCAAGATCACGACAGA
ATGGATGCTGGCTGGCAATCGCCTGACAAAGGCCGAAGTCACCAGCCAGTTCGAGGCCAGCTTTGCCGAGTGGATGGGTT
GCAATTACGCGGTTTTTGTAAACTCGGGGTCCTCGGCGAACCTGCTGATGATCTATGCAGCCAAAGAGGCCGGTCGCCTG
CGCAACAACAAGGTGATCGCACCCGGCGTTAGCTGGGTGACGACCGTCTCGCCCCTGATGCAACTGGGATTTGATGTGCG
TCTGTGTGACTGCGACCCCCTGAACCTCGGGCTTGATCTCAACCACCTGGAGGAGCTCTGCCGAACAGAGGCGCCCTCGA
TGCTGCTGCTGGTGCATGTGCTTGGGCACGCCAACCACCTGCGCGAGATCAAGGAGATCTGCGCGCGCTATGATGTGATC
CTTCTGGAGGACAGCTGCGAGGCGCTTGGGTCGACCTTTGAGGGGCAGAAACTCGGCTGTCACGGTCTTGCGGGGAGTTT
CTCGTTTTATTACGGGCATCACATCTCCACCATCGAAGGTGGCATGGTGGTAACCGACGATCAGGAACTGCATCAGGTCA
TGCTGTCGCTGCGCTCGCACGGGTGGAGCCGGGATCTTGCGCCGGGGCGCCAGGCGGACCTACAGCGCACGCATAATGTG
GATGAGTTCCGCAATCTCTACACGTTCTATTATGCGGGCTTCAATCTGCGCTCGACCGACCTGCAGGCCTACATCGGGTT
GCAGCAGCTCAAAAAGCTCGATGAAATCTGCCGCATTCGGGCGGAGAATTTCGAGACCTACGCGCAAGGCCTGCCTGGGT
TTTTCAAGCAGCAGAGCGAGACAGAACTGCTGTCGTCGTTTGCCTATGGAACGCTGGTGGAAAACCGAATGGAGGTCGCG
CGTGCGCTCAAGGCCGAGTCGATTGAATGTCGCCCTCTGATCTGTGGCAATATCGCCCGCCACCCGTTCTGGGTACGGGT
CTATGGTGATCAGGTTCTGCCAAATGCCGACCTGATTCATGATTTTGGCATCTACCTTCCCAATCACCACAACCTCAACG
CAGCCGACATTGATCGCGTCGCTGAGTGTTTCAACTCTGTGGCCTGCCCAATGGACTCAAACCTGAGACAAAGCGCCTGA

Upstream 100 bases:

>100_bases
TCAAGGATGCACAAAAGAAACGCGACATTGCGGCCGCCTACAACGAGGTGCGCGCCTACTATGTCGAATTGAAAGCCATG
CAGATGGTGAGGGCCGCGCA

Downstream 100 bases:

>100_bases
ACCCGCGCCTGAACCTTGAGCCTGCACGCCCCAAAAGCGCGTGCCCGAATACACGAGGATAACATGACCAAACGTGCGCT
CATCACCGGGGTCACCGGTC

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 398

Protein sequence:

>399_residues
MTTSKTVKPVLLAEETISQDDLKITTEWMLAGNRLTKAEVTSQFEASFAEWMGCNYAVFVNSGSSANLLMIYAAKEAGRL
RNNKVIAPGVSWVTTVSPLMQLGFDVRLCDCDPLNLGLDLNHLEELCRTEAPSMLLLVHVLGHANHLREIKEICARYDVI
LLEDSCEALGSTFEGQKLGCHGLAGSFSFYYGHHISTIEGGMVVTDDQELHQVMLSLRSHGWSRDLAPGRQADLQRTHNV
DEFRNLYTFYYAGFNLRSTDLQAYIGLQQLKKLDEICRIRAENFETYAQGLPGFFKQQSETELLSSFAYGTLVENRMEVA
RALKAESIECRPLICGNIARHPFWVRVYGDQVLPNADLIHDFGIYLPNHHNLNAADIDRVAECFNSVACPMDSNLRQSA

Sequences:

>Translated_399_residues
MTTSKTVKPVLLAEETISQDDLKITTEWMLAGNRLTKAEVTSQFEASFAEWMGCNYAVFVNSGSSANLLMIYAAKEAGRL
RNNKVIAPGVSWVTTVSPLMQLGFDVRLCDCDPLNLGLDLNHLEELCRTEAPSMLLLVHVLGHANHLREIKEICARYDVI
LLEDSCEALGSTFEGQKLGCHGLAGSFSFYYGHHISTIEGGMVVTDDQELHQVMLSLRSHGWSRDLAPGRQADLQRTHNV
DEFRNLYTFYYAGFNLRSTDLQAYIGLQQLKKLDEICRIRAENFETYAQGLPGFFKQQSETELLSSFAYGTLVENRMEVA
RALKAESIECRPLICGNIARHPFWVRVYGDQVLPNADLIHDFGIYLPNHHNLNAADIDRVAECFNSVACPMDSNLRQSA
>Mature_398_residues
TTSKTVKPVLLAEETISQDDLKITTEWMLAGNRLTKAEVTSQFEASFAEWMGCNYAVFVNSGSSANLLMIYAAKEAGRLR
NNKVIAPGVSWVTTVSPLMQLGFDVRLCDCDPLNLGLDLNHLEELCRTEAPSMLLLVHVLGHANHLREIKEICARYDVIL
LEDSCEALGSTFEGQKLGCHGLAGSFSFYYGHHISTIEGGMVVTDDQELHQVMLSLRSHGWSRDLAPGRQADLQRTHNVD
EFRNLYTFYYAGFNLRSTDLQAYIGLQQLKKLDEICRIRAENFETYAQGLPGFFKQQSETELLSSFAYGTLVENRMEVAR
ALKAESIECRPLICGNIARHPFWVRVYGDQVLPNADLIHDFGIYLPNHHNLNAADIDRVAECFNSVACPMDSNLRQSA

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=277, Percent_Identity=27.0758122743682, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI2367285, Length=215, Percent_Identity=25.1162790697674, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 44736; Mature: 44605

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTSKTVKPVLLAEETISQDDLKITTEWMLAGNRLTKAEVTSQFEASFAEWMGCNYAVFV
CCCCCCCCCEEEHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
NSGSSANLLMIYAAKEAGRLRNNKVIAPGVSWVTTVSPLMQLGFDVRLCDCDPLNLGLDL
ECCCCCCEEEEEEECHHCCCCCCEEEECCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCH
NHLEELCRTEAPSMLLLVHVLGHANHLREIKEICARYDVILLEDSCEALGSTFEGQKLGC
HHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCC
HGLAGSFSFYYGHHISTIEGGMVVTDDQELHQVMLSLRSHGWSRDLAPGRQADLQRTHNV
CCCCCCCEEEECCEEEEECCCEEEECHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCH
DEFRNLYTFYYAGFNLRSTDLQAYIGLQQLKKLDEICRIRAENFETYAQGLPGFFKQQSE
HHHHHHHHHEEECCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHH
TELLSSFAYGTLVENRMEVARALKAESIECRPLICGNIARHPFWVRVYGDQVLPNADLIH
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCEEEEEECCCCCCCCHHHH
DFGIYLPNHHNLNAADIDRVAECFNSVACPMDSNLRQSA
HHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
TTSKTVKPVLLAEETISQDDLKITTEWMLAGNRLTKAEVTSQFEASFAEWMGCNYAVFV
CCCCCCCCEEEHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
NSGSSANLLMIYAAKEAGRLRNNKVIAPGVSWVTTVSPLMQLGFDVRLCDCDPLNLGLDL
ECCCCCCEEEEEEECHHCCCCCCEEEECCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCH
NHLEELCRTEAPSMLLLVHVLGHANHLREIKEICARYDVILLEDSCEALGSTFEGQKLGC
HHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCC
HGLAGSFSFYYGHHISTIEGGMVVTDDQELHQVMLSLRSHGWSRDLAPGRQADLQRTHNV
CCCCCCCEEEECCEEEEECCCEEEECHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCH
DEFRNLYTFYYAGFNLRSTDLQAYIGLQQLKKLDEICRIRAENFETYAQGLPGFFKQQSE
HHHHHHHHHEEECCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHH
TELLSSFAYGTLVENRMEVARALKAESIECRPLICGNIARHPFWVRVYGDQVLPNADLIH
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCEEEEEECCCCCCCCHHHH
DFGIYLPNHHNLNAADIDRVAECFNSVACPMDSNLRQSA
HHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1710759; 11677609 [H]