Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is 99081142

Identifier: 99081142

GI number: 99081142

Start: 1393738

End: 1394232

Strand: Reverse

Name: 99081142

Synonym: TM1040_1301

Alternate gene names: NA

Gene position: 1394232-1393738 (Counterclockwise)

Preceding gene: 99081143

Following gene: 99081141

Centisome position: 43.56

GC content: 60.0

Gene sequence:

>495_bases
TTGACGTTTCGGGCAGTGGTCGAGCAACCGATTTTTCCGGCGCCGGAGTGGGGGCTTTCTCTCTTCCTGCGCGGCAAGAG
CTCGATTGACTTGATTAGCGCTGCGAGTGGTGTGGATCATATTTTTGAGGCATCTGCGTTGGTCACGGCCTCTTGGCAGC
CCGGGCGGTATGCCTACGTGATCCGTGCCAGCGACGGCGCTGATGTGCATCCGGTCGAGCGCGGCGAAGTTCTGATCGCG
CCGGATCTTGCTGCGCAAGGTGAGAATTTCGACGGACGCGATCATGTGCGCAAGGTGCTGGATGCCATCGAGGCGGTGAT
CGAAAACCGCGCGACCATTGATCAGCAAAGTTACACCATCAACAACCGATCACTGCAGCGCACGCCGTTGTCGGAGCTGA
TGAAACTGCGCCATCAATATCGTGCCGAGCTGGCGGCTAAGAAAGCGCGGCGGCGCGGCGGCTTCGGGCGCGCGATCAAG
GTGCGCTTGACATGA

Upstream 100 bases:

>100_bases
CCGAAAAAGACTGGCTGGGGGGCGAAGAAGCGCCGACGCCGTCGCAGGTATTGAGCAGGGTTAGGACGTGGGCGCAATTC
CAACTGAAATCGGGGCAGGG

Downstream 100 bases:

>100_bases
TCTGGCGACTGTTCAGACGCGAAGATCCTGTTGCGCCGGAGCCGGATCGCAAGCCCCCTCCAATGCTGACGGCACCCCGA
AGGCGTGGCCAGCGCATGTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MTFRAVVEQPIFPAPEWGLSLFLRGKSSIDLISAASGVDHIFEASALVTASWQPGRYAYVIRASDGADVHPVERGEVLIA
PDLAAQGENFDGRDHVRKVLDAIEAVIENRATIDQQSYTINNRSLQRTPLSELMKLRHQYRAELAAKKARRRGGFGRAIK
VRLT

Sequences:

>Translated_164_residues
MTFRAVVEQPIFPAPEWGLSLFLRGKSSIDLISAASGVDHIFEASALVTASWQPGRYAYVIRASDGADVHPVERGEVLIA
PDLAAQGENFDGRDHVRKVLDAIEAVIENRATIDQQSYTINNRSLQRTPLSELMKLRHQYRAELAAKKARRRGGFGRAIK
VRLT
>Mature_163_residues
TFRAVVEQPIFPAPEWGLSLFLRGKSSIDLISAASGVDHIFEASALVTASWQPGRYAYVIRASDGADVHPVERGEVLIAP
DLAAQGENFDGRDHVRKVLDAIEAVIENRATIDQQSYTINNRSLQRTPLSELMKLRHQYRAELAAKKARRRGGFGRAIKV
RLT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18225; Mature: 18094

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFRAVVEQPIFPAPEWGLSLFLRGKSSIDLISAASGVDHIFEASALVTASWQPGRYAYV
CCCHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHCCHHHHHHCCEEEEECCCCCCEEEE
IRASDGADVHPVERGEVLIAPDLAAQGENFDGRDHVRKVLDAIEAVIENRATIDQQSYTI
EECCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEE
NNRSLQRTPLSELMKLRHQYRAELAAKKARRRGGFGRAIKVRLT
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
>Mature Secondary Structure 
TFRAVVEQPIFPAPEWGLSLFLRGKSSIDLISAASGVDHIFEASALVTASWQPGRYAYV
CCHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHCCHHHHHHCCEEEEECCCCCCEEEE
IRASDGADVHPVERGEVLIAPDLAAQGENFDGRDHVRKVLDAIEAVIENRATIDQQSYTI
EECCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEE
NNRSLQRTPLSELMKLRHQYRAELAAKKARRRGGFGRAIKVRLT
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA