| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081078
Identifier: 99081078
GI number: 99081078
Start: 1333106
End: 1334272
Strand: Reverse
Name: 99081078
Synonym: TM1040_1237
Alternate gene names: NA
Gene position: 1334272-1333106 (Counterclockwise)
Preceding gene: 99081079
Following gene: 99081077
Centisome position: 41.68
GC content: 60.33
Gene sequence:
>1167_bases ATGACCACAGATCTTGAGCAGCAATTCGAATTCCTCACTGAAATCGAAAGGCTGCGCGAGGTGGAACGGCAGAACCTTCT GCTGGACGGCAGCCGGGTAGAAAATTCGGCCGAGCACAGCTGGCATCTGGCGCTCTATGCGCTGGTGTTTGCCCCCTATG CGCCCTCCGACGTGTCCATAACCCGTGTCATCGAGATGCTCTTGCTGCATGACATCGTGGAGATCGACGTTGGCGATCAT CCGATTGATGAGCCAACAGACTGGGAGGCGGTGGCACAAGCCGAAGACCGCGCGCAGCGACGGATATTCGGACTGCTTCC AGAAGCGCAGGGCCACCGGCTGCAGGCGCTCTGGCAGGAATTTGAAGCGGCGCATACAGCAGATGCGCGCTTTGCAAAAT CGCTGGACTACTGCCAGCCGATCTTCCAGACGCTTTGCGCTGTTTCGCCTCCCGCCGATCACCTTCGGGTGGTACGCGAA AACCTGACCACCGGTCGCGCCACCTCTCTTCGAGAGCGGTTTCCCGAGGCTTATGCAGCAGCATGCAGCCTCATTGACGG TCAGACCGTCAGCGATCCGGACTTTGCAGCACGGCTCGCGTTTCTGTCCGAAGCTGACCGGTTGAAGTCGGTTCTACGCG CCTCGCGGATTGCCTCCGGCACCCGATATGAAAACTCGGCAGAACACAGCTGGCACATCATGCTCTATGGCTGGATCCTC GCTCCGCATAGCCTGTCGGAAGTCGACGTCTCGCGCGTTCTCAAGATGCTGCTACTGCACGATCTGGTCGAGATTGACGC CGGCGATGTGCCCATTCACTCCAATCTGGACGCCGCCGCGCTGCGCCAGATCGAAGAGACTGAGAAAGCCGCCGCAGAGC GGATCTTTGGGCTGTTGCCGGACGCGCAGGCCAAGGACTGCCTCATGATCTGGCAGGAATTCGAAGCCGCCCAGAGCGCG GATGCGGTCTTTGCCAAATCCATCGACCGCGTGCAGCCGGTCTTGTTGAATATTGCCACCGGCGGTGGCAGCTGGGTGGC CTATGATGTCACCCTACCGCAGCTGGAAACCCGCGTGGGCGTGAAAATTGCGCGGGGCGCACCGAAGGTCTGGGACCATG TGCGTGCGCTTCTGTTGCCCTGGTTTACGGCACAAGGCCGCCTCTGA
Upstream 100 bases:
>100_bases AGGTTCGCATTCGTCTTGCCGAGCGCAAGGCCCGTGATTTTCTCAGCAAACGCCTGGAGGCCGCCAAGGCTGCACTCGAG GCAGAGGCCAAAAAACACCA
Downstream 100 bases:
>100_bases AGGCTAAGAACCCGGCGCGCACGGCTCAATCGATGGGCGCGCCTGCATTTCCCCTCTTGCGTCGGCGCGCATGGCAGGAT TTGAGGGGAGCATGCCCTGC
Product: HD domain-containing protein
Products: NA
Alternate protein names: Metal-Dependent Phosphohydrolase; HD Domain Protein; HD Domain-Containing Protein; HD Superfamily Hydrolase; Metal-Dependent Phosphohydrolase HD Subdomain; Hydrolase; Metal-Dependent Phosphohydrolase HD Region; HD Superfamily Hydrolase-Like Protein; Hydrolases Of HD Superfamily; Hydrolase Of HD Superfamily; Metal-Dependent Phosphoesterase; Xin-Antitoxin System Toxin Component PIN Family; HD Superfamily Metal-Dependent Phosphohydrolase; HD Domain-Containing; HDDC2 Protein
Number of amino acids: Translated: 388; Mature: 387
Protein sequence:
>388_residues MTTDLEQQFEFLTEIERLREVERQNLLLDGSRVENSAEHSWHLALYALVFAPYAPSDVSITRVIEMLLLHDIVEIDVGDH PIDEPTDWEAVAQAEDRAQRRIFGLLPEAQGHRLQALWQEFEAAHTADARFAKSLDYCQPIFQTLCAVSPPADHLRVVRE NLTTGRATSLRERFPEAYAAACSLIDGQTVSDPDFAARLAFLSEADRLKSVLRASRIASGTRYENSAEHSWHIMLYGWIL APHSLSEVDVSRVLKMLLLHDLVEIDAGDVPIHSNLDAAALRQIEETEKAAAERIFGLLPDAQAKDCLMIWQEFEAAQSA DAVFAKSIDRVQPVLLNIATGGGSWVAYDVTLPQLETRVGVKIARGAPKVWDHVRALLLPWFTAQGRL
Sequences:
>Translated_388_residues MTTDLEQQFEFLTEIERLREVERQNLLLDGSRVENSAEHSWHLALYALVFAPYAPSDVSITRVIEMLLLHDIVEIDVGDH PIDEPTDWEAVAQAEDRAQRRIFGLLPEAQGHRLQALWQEFEAAHTADARFAKSLDYCQPIFQTLCAVSPPADHLRVVRE NLTTGRATSLRERFPEAYAAACSLIDGQTVSDPDFAARLAFLSEADRLKSVLRASRIASGTRYENSAEHSWHIMLYGWIL APHSLSEVDVSRVLKMLLLHDLVEIDAGDVPIHSNLDAAALRQIEETEKAAAERIFGLLPDAQAKDCLMIWQEFEAAQSA DAVFAKSIDRVQPVLLNIATGGGSWVAYDVTLPQLETRVGVKIARGAPKVWDHVRALLLPWFTAQGRL >Mature_387_residues TTDLEQQFEFLTEIERLREVERQNLLLDGSRVENSAEHSWHLALYALVFAPYAPSDVSITRVIEMLLLHDIVEIDVGDHP IDEPTDWEAVAQAEDRAQRRIFGLLPEAQGHRLQALWQEFEAAHTADARFAKSLDYCQPIFQTLCAVSPPADHLRVVREN LTTGRATSLRERFPEAYAAACSLIDGQTVSDPDFAARLAFLSEADRLKSVLRASRIASGTRYENSAEHSWHIMLYGWILA PHSLSEVDVSRVLKMLLLHDLVEIDAGDVPIHSNLDAAALRQIEETEKAAAERIFGLLPDAQAKDCLMIWQEFEAAQSAD AVFAKSIDRVQPVLLNIATGGGSWVAYDVTLPQLETRVGVKIARGAPKVWDHVRALLLPWFTAQGRL
Specific function: Unknown
COG id: COG1896
COG function: function code R; Predicted hydrolases of HD superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43417; Mature: 43285
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTDLEQQFEFLTEIERLREVERQNLLLDGSRVENSAEHSWHLALYALVFAPYAPSDVSI CCCCHHHHHHHHHHHHHHHHHHHHCEEECCHHCCCCCCHHHHHHHHHHHHCCCCCCCCHH TRVIEMLLLHDIVEIDVGDHPIDEPTDWEAVAQAEDRAQRRIFGLLPEAQGHRLQALWQE HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH FEAAHTADARFAKSLDYCQPIFQTLCAVSPPADHLRVVRENLTTGRATSLRERFPEAYAA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH ACSLIDGQTVSDPDFAARLAFLSEADRLKSVLRASRIASGTRYENSAEHSWHIMLYGWIL HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEE APHSLSEVDVSRVLKMLLLHDLVEIDAGDVPIHSNLDAAALRQIEETEKAAAERIFGLLP CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC DAQAKDCLMIWQEFEAAQSADAVFAKSIDRVQPVLLNIATGGGSWVAYDVTLPQLETRVG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEEECHHHHHHHC VKIARGAPKVWDHVRALLLPWFTAQGRL EEEECCCCHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TTDLEQQFEFLTEIERLREVERQNLLLDGSRVENSAEHSWHLALYALVFAPYAPSDVSI CCCHHHHHHHHHHHHHHHHHHHHCEEECCHHCCCCCCHHHHHHHHHHHHCCCCCCCCHH TRVIEMLLLHDIVEIDVGDHPIDEPTDWEAVAQAEDRAQRRIFGLLPEAQGHRLQALWQE HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH FEAAHTADARFAKSLDYCQPIFQTLCAVSPPADHLRVVRENLTTGRATSLRERFPEAYAA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH ACSLIDGQTVSDPDFAARLAFLSEADRLKSVLRASRIASGTRYENSAEHSWHIMLYGWIL HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEE APHSLSEVDVSRVLKMLLLHDLVEIDAGDVPIHSNLDAAALRQIEETEKAAAERIFGLLP CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC DAQAKDCLMIWQEFEAAQSADAVFAKSIDRVQPVLLNIATGGGSWVAYDVTLPQLETRVG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEEECHHHHHHHC VKIARGAPKVWDHVRALLLPWFTAQGRL EEEECCCCHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA