Click here to switch to the map view.

The map label for this gene is yddS [H]

Identifier: 99080997

GI number: 99080997

Start: 1247435

End: 1248664

Strand: Reverse

Name: yddS [H]

Synonym: TM1040_1156

Alternate gene names: 99080997

Gene position: 1248664-1247435 (Counterclockwise)

Preceding gene: 99081000

Following gene: 99080988

Centisome position: 39.01

GC content: 62.11

Gene sequence:

>1230_bases
ATGGCCATGACTATGACCGCTCCTGCCCCCGACGACCATATTGCAAAGCGCAATGTTCTGATTCTTGTGCTTGCGCAGGC
CTTTTTGGGTGCGCAGATGCCGATGATCTTCATCGTTGGGGGGCTGGCCGGTCAATCGCTTGCCACCAACCCCTGTCTTG
CGACATTGCCGATCTCGCTCATTGTCGCGGGTTCGATGATCTCGGCCACGCCGATCTCTGCGATCATGCAGCGCTTTGGC
CGGCGCGCTGGTTTTGCGATCGGGGCCACGGGCGGCGCACTTGGTGGTCTGATTGGCGGCTATGGGCTCTATACCGGGTC
GTTTCCGGTGTTTCTCATCGGCAGCGCCCTCACCGGCGTCTACATGAGCGCGCAGGGCTTCTACCGCTTTGCCGCCGCCG
ACACCGCCTCTGACAGTTTCCGCCCCAAGGCGATTTCCTATGTCATGGCTGGTGGGCTCTTGTCGGCCATCATCGGCCCG
CAGCTGGTCAAAGCCACAAGCGACGCCTTCGTCATTCCTTTCCTTGGCACCTATATGGCGGTGATTGCGGTCAATGTGCT
GGGGGTCGGGCTCTTTGCGTTCCTGCGCATCCCCCGCCCCGAAGCCCCGAGCGAGGACGCCCCGATGGGCCGCAGCCGCT
GGGAGCTGATGAAAACACCAACCATTGCCGTCGCGGTCATCTGCGCCATGGTATCCTATGCGCTGATGAACCTTGTGATG
ACCTCGACACCGCTTGCAGTTGTAGGCTGCGGCTTTGGTCAGGACGCGGCGGCGGATGTGGTCACATGGCACGTTCTGGC
CATGTATGTGCCGTCCTTCTTTACCGGGCATCTGATCGCGCGCTTCGGGGTGGAGAAAATCGTTGGCGCGGGGCTTGTGA
TCCTCGCCGGCGCCGGTGCGGTCGCCTTGCAGGGCGTAGAACTCAGCAACTTCTTTGTGGCGCTTGTCCTTCTGGGCGTC
GGCTGGAATTTTGGCTTTATTGGCGCAACCACAATGCTGGCCGGCGCGCATGAGGCGCATGAGCGCGGCCGTATGCAGGG
TCTCAATGACCTCTTGGTCTTTGGCGGTGTCACCGTGGCATCACTGGCCTCGGGAGGCCTGATGAACTGCTCAGGCGGCA
ACCCGGTCGAGGGCTGGGCCGCTGTCAATATGGCGATGGCGCCCTTCCTGGTTCTCGCGGGGGGCGCACTGATCTGGCTG
GTGCTGAAACCCAAATCCGCCGCGGCCTGA

Upstream 100 bases:

>100_bases
GGGTCTCGATCAGGCGGCCCACCGTCATCTGGAGCCACGCGCGAAAATTGTATCGGTGCACTGCACGCCGCTTGTTCCTT
CACCTGTTCAGGGCTACGCA

Downstream 100 bases:

>100_bases
TCGCCAGACGGGACCTGATCGCCAGCCGCAGTCTCAGTCCCCATTGCGCGGGCGCAGCTACCAGCGCCCGCTGCCAGCCT
GCCACATCAGGCTGATACGC

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 408

Protein sequence:

>409_residues
MAMTMTAPAPDDHIAKRNVLILVLAQAFLGAQMPMIFIVGGLAGQSLATNPCLATLPISLIVAGSMISATPISAIMQRFG
RRAGFAIGATGGALGGLIGGYGLYTGSFPVFLIGSALTGVYMSAQGFYRFAAADTASDSFRPKAISYVMAGGLLSAIIGP
QLVKATSDAFVIPFLGTYMAVIAVNVLGVGLFAFLRIPRPEAPSEDAPMGRSRWELMKTPTIAVAVICAMVSYALMNLVM
TSTPLAVVGCGFGQDAAADVVTWHVLAMYVPSFFTGHLIARFGVEKIVGAGLVILAGAGAVALQGVELSNFFVALVLLGV
GWNFGFIGATTMLAGAHEAHERGRMQGLNDLLVFGGVTVASLASGGLMNCSGGNPVEGWAAVNMAMAPFLVLAGGALIWL
VLKPKSAAA

Sequences:

>Translated_409_residues
MAMTMTAPAPDDHIAKRNVLILVLAQAFLGAQMPMIFIVGGLAGQSLATNPCLATLPISLIVAGSMISATPISAIMQRFG
RRAGFAIGATGGALGGLIGGYGLYTGSFPVFLIGSALTGVYMSAQGFYRFAAADTASDSFRPKAISYVMAGGLLSAIIGP
QLVKATSDAFVIPFLGTYMAVIAVNVLGVGLFAFLRIPRPEAPSEDAPMGRSRWELMKTPTIAVAVICAMVSYALMNLVM
TSTPLAVVGCGFGQDAAADVVTWHVLAMYVPSFFTGHLIARFGVEKIVGAGLVILAGAGAVALQGVELSNFFVALVLLGV
GWNFGFIGATTMLAGAHEAHERGRMQGLNDLLVFGGVTVASLASGGLMNCSGGNPVEGWAAVNMAMAPFLVLAGGALIWL
VLKPKSAAA
>Mature_408_residues
AMTMTAPAPDDHIAKRNVLILVLAQAFLGAQMPMIFIVGGLAGQSLATNPCLATLPISLIVAGSMISATPISAIMQRFGR
RAGFAIGATGGALGGLIGGYGLYTGSFPVFLIGSALTGVYMSAQGFYRFAAADTASDSFRPKAISYVMAGGLLSAIIGPQ
LVKATSDAFVIPFLGTYMAVIAVNVLGVGLFAFLRIPRPEAPSEDAPMGRSRWELMKTPTIAVAVICAMVSYALMNLVMT
STPLAVVGCGFGQDAAADVVTWHVLAMYVPSFFTGHLIARFGVEKIVGAGLVILAGAGAVALQGVELSNFFVALVLLGVG
WNFGFIGATTMLAGAHEAHERGRMQGLNDLLVFGGVTVASLASGGLMNCSGGNPVEGWAAVNMAMAPFLVLAGGALIWLV
LKPKSAAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196
- InterPro:   IPR005828 [H]

Pfam domain/function: PF07690 MFS_1; PF00083 Sugar_tr [H]

EC number: NA

Molecular weight: Translated: 41955; Mature: 41824

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMTMTAPAPDDHIAKRNVLILVLAQAFLGAQMPMIFIVGGLAGQSLATNPCLATLPISL
CCEEECCCCCCHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHH
IVAGSMISATPISAIMQRFGRRAGFAIGATGGALGGLIGGYGLYTGSFPVFLIGSALTGV
HHHCCHHCCCHHHHHHHHHCHHCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
YMSAQGFYRFAAADTASDSFRPKAISYVMAGGLLSAIIGPQLVKATSDAFVIPFLGTYMA
HHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCEEHHHHHHHHH
VIAVNVLGVGLFAFLRIPRPEAPSEDAPMGRSRWELMKTPTIAVAVICAMVSYALMNLVM
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
TSTPLAVVGCGFGQDAAADVVTWHVLAMYVPSFFTGHLIARFGVEKIVGAGLVILAGAGA
HCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCH
VALQGVELSNFFVALVLLGVGWNFGFIGATTMLAGAHEAHERGRMQGLNDLLVFGGVTVA
HEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHCCHHHH
SLASGGLMNCSGGNPVEGWAAVNMAMAPFLVLAGGALIWLVLKPKSAAA
HHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCC
>Mature Secondary Structure 
AMTMTAPAPDDHIAKRNVLILVLAQAFLGAQMPMIFIVGGLAGQSLATNPCLATLPISL
CEEECCCCCCHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHH
IVAGSMISATPISAIMQRFGRRAGFAIGATGGALGGLIGGYGLYTGSFPVFLIGSALTGV
HHHCCHHCCCHHHHHHHHHCHHCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
YMSAQGFYRFAAADTASDSFRPKAISYVMAGGLLSAIIGPQLVKATSDAFVIPFLGTYMA
HHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCEEHHHHHHHHH
VIAVNVLGVGLFAFLRIPRPEAPSEDAPMGRSRWELMKTPTIAVAVICAMVSYALMNLVM
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
TSTPLAVVGCGFGQDAAADVVTWHVLAMYVPSFFTGHLIARFGVEKIVGAGLVILAGAGA
HCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCH
VALQGVELSNFFVALVLLGVGWNFGFIGATTMLAGAHEAHERGRMQGLNDLLVFGGVTVA
HEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHCCHHHH
SLASGGLMNCSGGNPVEGWAAVNMAMAPFLVLAGGALIWLVLKPKSAAA
HHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]