| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is bcp [H]
Identifier: 99080932
GI number: 99080932
Start: 1166917
End: 1167378
Strand: Reverse
Name: bcp [H]
Synonym: TM1040_1091
Alternate gene names: 99080932
Gene position: 1167378-1166917 (Counterclockwise)
Preceding gene: 99080940
Following gene: 99080931
Centisome position: 36.47
GC content: 58.01
Gene sequence:
>462_bases ATGCTCGAACCCTCTGACCTCGCCCCCGCGTTCACTCTGCCGCGCGATGGCGGCGGTGAAGTTTCCCTTTCGGACCTGAA GGGTCAGGTCGTTGTTTTGTTTTTCTATCCCCGCGATGATACGCCGGGTTGCACCAAGGAATCCATTGGATTTTCCGAAC ACTTGCAAGCCTTTGCCGATGCGGGCGCCGCTGTCTATGGCATCTCGCGCGACACCGTGGCCAAACACGACAAATTTGTC GCCAAACATGGGCTCACCGTGCCGCTGTTGTCGGATGCCGAAAGCACCATGTGCGAGGACTATGGCGTCTGGGTGGAAAA GAACATGTATGGCCGCAAAAGCATGGGGATCGAGCGCTCGACCTTCGTGATCGACCGCGACGGAAAGATCGCCCGGATCT GGCGCAAGGTCAAAGTGCCCGGCCATGTCGAAGAGGTTCTGGAAGCCGTCAAAGAGCTCTGA
Upstream 100 bases:
>100_bases CGGCGCGGCCACGATATATGGTTTTCCTTTGTCCGACATGATCTATGTATGGCCCGCAGGTACAATTAAACTTGCGCGAA CCCTTGAGGAGACCCAACAC
Downstream 100 bases:
>100_bases GGACCGACGGCGCGGCCTCAGGCCGGAGGCTCAGGAGAGGAGCTCAGGCTCTGGGCTCAGAAGAGGGGCTTAGCGGGGTC ACGCTCGCCCCTTTCGCTCG
Product: redoxin
Products: NA
Alternate protein names: Bacterioferritin comigratory protein; Thioredoxin reductase [H]
Number of amino acids: Translated: 153; Mature: 153
Protein sequence:
>153_residues MLEPSDLAPAFTLPRDGGGEVSLSDLKGQVVVLFFYPRDDTPGCTKESIGFSEHLQAFADAGAAVYGISRDTVAKHDKFV AKHGLTVPLLSDAESTMCEDYGVWVEKNMYGRKSMGIERSTFVIDRDGKIARIWRKVKVPGHVEEVLEAVKEL
Sequences:
>Translated_153_residues MLEPSDLAPAFTLPRDGGGEVSLSDLKGQVVVLFFYPRDDTPGCTKESIGFSEHLQAFADAGAAVYGISRDTVAKHDKFV AKHGLTVPLLSDAESTMCEDYGVWVEKNMYGRKSMGIERSTFVIDRDGKIARIWRKVKVPGHVEEVLEAVKEL >Mature_153_residues MLEPSDLAPAFTLPRDGGGEVSLSDLKGQVVVLFFYPRDDTPGCTKESIGFSEHLQAFADAGAAVYGISRDTVAKHDKFV AKHGLTVPLLSDAESTMCEDYGVWVEKNMYGRKSMGIERSTFVIDRDGKIARIWRKVKVPGHVEEVLEAVKEL
Specific function: Unknown
COG id: COG1225
COG function: function code O; Peroxiredoxin
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Homo sapiens, GI32189392, Length=141, Percent_Identity=37.5886524822695, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI4505591, Length=159, Percent_Identity=33.9622641509434, Blast_Score=67, Evalue=9e-12, Organism=Homo sapiens, GI32455266, Length=159, Percent_Identity=33.9622641509434, Blast_Score=67, Evalue=9e-12, Organism=Homo sapiens, GI32455264, Length=159, Percent_Identity=33.9622641509434, Blast_Score=67, Evalue=9e-12, Organism=Homo sapiens, GI32483377, Length=142, Percent_Identity=32.3943661971831, Blast_Score=65, Evalue=3e-11, Organism=Homo sapiens, GI5802974, Length=142, Percent_Identity=32.3943661971831, Blast_Score=65, Evalue=3e-11, Organism=Escherichia coli, GI1788825, Length=151, Percent_Identity=41.0596026490066, Blast_Score=127, Evalue=4e-31, Organism=Caenorhabditis elegans, GI193204376, Length=141, Percent_Identity=35.4609929078014, Blast_Score=67, Evalue=3e-12, Organism=Caenorhabditis elegans, GI32565831, Length=141, Percent_Identity=35.4609929078014, Blast_Score=67, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6322180, Length=93, Percent_Identity=39.7849462365591, Blast_Score=68, Evalue=5e-13, Organism=Drosophila melanogaster, GI17738015, Length=142, Percent_Identity=37.3239436619718, Blast_Score=70, Evalue=5e-13, Organism=Drosophila melanogaster, GI21357347, Length=162, Percent_Identity=31.4814814814815, Blast_Score=66, Evalue=7e-12,
Paralogues:
None
Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000866 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF00578 AhpC-TSA [H]
EC number: =1.11.1.15 [H]
Molecular weight: Translated: 16846; Mature: 16846
Theoretical pI: Translated: 5.29; Mature: 5.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLEPSDLAPAFTLPRDGGGEVSLSDLKGQVVVLFFYPRDDTPGCTKESIGFSEHLQAFAD CCCCCCCCCEEECCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCHHCCHHHHHHHHHC AGAAVYGISRDTVAKHDKFVAKHGLTVPLLSDAESTMCEDYGVWVEKNMYGRKSMGIERS CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCEEECCCCCCHHCCCCCC TFVIDRDGKIARIWRKVKVPGHVEEVLEAVKEL EEEEECCCCCEEHHHHCCCCCHHHHHHHHHHCC >Mature Secondary Structure MLEPSDLAPAFTLPRDGGGEVSLSDLKGQVVVLFFYPRDDTPGCTKESIGFSEHLQAFAD CCCCCCCCCEEECCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCHHCCHHHHHHHHHC AGAAVYGISRDTVAKHDKFVAKHGLTVPLLSDAESTMCEDYGVWVEKNMYGRKSMGIERS CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCEEECCCCCCHHCCCCCC TFVIDRDGKIARIWRKVKVPGHVEEVLEAVKEL EEEEECCCCCEEHHHHCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12704232 [H]