Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080702

Identifier: 99080702

GI number: 99080702

Start: 914620

End: 915837

Strand: Direct

Name: 99080702

Synonym: TM1040_0861

Alternate gene names: NA

Gene position: 914620-915837 (Clockwise)

Preceding gene: 161899030

Following gene: 99080703

Centisome position: 28.57

GC content: 62.32

Gene sequence:

>1218_bases
ATGATCGGGCGCCTTACGCAGCGCACTTTTGGACGTCGTGATGAAACCCCGGAACCGCCACGCGGTTTCGATGATTTCGA
GTTGCGTCTTGGCGATATGATGCGCGGCGAACGCGCTACCATGGGCAAGTCGCTCCTGGATGTACAGCGCGAGCTACGGA
TCAAAGCCTCCTACATCGATGCCATTGAAAACTGTGACCCTTCGGTCTTTGACACGCCCGGTTTTATTGCCGGGTATGTG
CGCTCTTATGCGCGCTACCTCAACATGGACCCCGAAAAGGCCTTTGGTGCCTTCTGCGCCGAGAGCGGTTTTTCCGTGGC
CCACGGCATGTCATCTGAGGCCTCCGTACGCAAACCCCGCGATATATCCGCCTCCAGCAGCAAAGGTCTCGGGGGCGATG
CATTCAGCAATTCCGCCACGCCATTTGTCCCGGTGTCTGACGGTGTCTTTAGCCAGATCGACCCGCGCGCGGTGGGCTCC
GTCCTCGTGCTGGCCAGCGTCATTGGCGGGCTTGCCTTTGGCGGCTGGAAGATCCTGCACGAGGTGCAGCAGGTCACATT
CGCCCCGGTCGAGCAAACACCGGAGGTGCTTGCGGAGCTGGACCCGCTCGAAACCGCATCTCTCGTCGCATCGGACCTGA
CCGAGGACCCCGCAAGCGAGGCTTTGGATCGCCTTTACCGCCCTCAGGCGCTGGATGTGCCGGTTCTGGTCGCCCGCGAT
GCGCCCATCTCGACGCTTGATCCGCGCGCGCATGGGAATTTCGCAGGCTTCGAACAGCCTGGTATTTCATTGGCAGATGC
CATGGTGCCCGCAAACGAACAAACCGACCTCGCAGTGCCGCAGGTGCTCGAAGCGCGCGCCCCTTCGGTCGAGATGATCG
CCGTGCGCCCCTCCTGGGTGCAAGTCAAGGCCGCCGATGGATCGGTGATCTTCGAGACGATCATGGAGCCGGGGCAAACC
TTTGACGTGCCTCTCACCGAAGACGCCCCGCGTCTGCGCACCGGCGAAAGCAGCGCGATCTATTTCGCGGTGAATGGCGA
ACACTACGGCCCGGTGGGCGGTCGCGGTCAGGTCACCAAGGATGTGGAACTCTCGCCAGATGCGCTCAGCGGCCGCTTTG
AGATCGCCGATCTGGAGGCCGAGCAGAACCAGGCGCTTGCCACCATGGTCGCCCAGTTGCGCGCCACGCAACAGACCCCG
GTAGACAGCGCCGACTGA

Upstream 100 bases:

>100_bases
TTGTGTTATTCTTTCATCAATGAAACCACGCTGACGAATCGGGAATCGGTTTGTACGGTGCGGATGTCGCAAAACGGCAG
GACTTGATGGGACAGCAGGC

Downstream 100 bases:

>100_bases
CGAGACGGCAGAGGACGCGCTCAAAACACCCATGGATTCGCAGAACGCCCCGGACAGCCATTGCAGGCTCCGGGGCGTCG
GCCTATCTAAGGGGCAAGCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MIGRLTQRTFGRRDETPEPPRGFDDFELRLGDMMRGERATMGKSLLDVQRELRIKASYIDAIENCDPSVFDTPGFIAGYV
RSYARYLNMDPEKAFGAFCAESGFSVAHGMSSEASVRKPRDISASSSKGLGGDAFSNSATPFVPVSDGVFSQIDPRAVGS
VLVLASVIGGLAFGGWKILHEVQQVTFAPVEQTPEVLAELDPLETASLVASDLTEDPASEALDRLYRPQALDVPVLVARD
APISTLDPRAHGNFAGFEQPGISLADAMVPANEQTDLAVPQVLEARAPSVEMIAVRPSWVQVKAADGSVIFETIMEPGQT
FDVPLTEDAPRLRTGESSAIYFAVNGEHYGPVGGRGQVTKDVELSPDALSGRFEIADLEAEQNQALATMVAQLRATQQTP
VDSAD

Sequences:

>Translated_405_residues
MIGRLTQRTFGRRDETPEPPRGFDDFELRLGDMMRGERATMGKSLLDVQRELRIKASYIDAIENCDPSVFDTPGFIAGYV
RSYARYLNMDPEKAFGAFCAESGFSVAHGMSSEASVRKPRDISASSSKGLGGDAFSNSATPFVPVSDGVFSQIDPRAVGS
VLVLASVIGGLAFGGWKILHEVQQVTFAPVEQTPEVLAELDPLETASLVASDLTEDPASEALDRLYRPQALDVPVLVARD
APISTLDPRAHGNFAGFEQPGISLADAMVPANEQTDLAVPQVLEARAPSVEMIAVRPSWVQVKAADGSVIFETIMEPGQT
FDVPLTEDAPRLRTGESSAIYFAVNGEHYGPVGGRGQVTKDVELSPDALSGRFEIADLEAEQNQALATMVAQLRATQQTP
VDSAD
>Mature_405_residues
MIGRLTQRTFGRRDETPEPPRGFDDFELRLGDMMRGERATMGKSLLDVQRELRIKASYIDAIENCDPSVFDTPGFIAGYV
RSYARYLNMDPEKAFGAFCAESGFSVAHGMSSEASVRKPRDISASSSKGLGGDAFSNSATPFVPVSDGVFSQIDPRAVGS
VLVLASVIGGLAFGGWKILHEVQQVTFAPVEQTPEVLAELDPLETASLVASDLTEDPASEALDRLYRPQALDVPVLVARD
APISTLDPRAHGNFAGFEQPGISLADAMVPANEQTDLAVPQVLEARAPSVEMIAVRPSWVQVKAADGSVIFETIMEPGQT
FDVPLTEDAPRLRTGESSAIYFAVNGEHYGPVGGRGQVTKDVELSPDALSGRFEIADLEAEQNQALATMVAQLRATQQTP
VDSAD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43477; Mature: 43477

Theoretical pI: Translated: 4.26; Mature: 4.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGRLTQRTFGRRDETPEPPRGFDDFELRLGDMMRGERATMGKSLLDVQRELRIKASYID
CCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
AIENCDPSVFDTPGFIAGYVRSYARYLNMDPEKAFGAFCAESGFSVAHGMSSEASVRKPR
HHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCC
DISASSSKGLGGDAFSNSATPFVPVSDGVFSQIDPRAVGSVLVLASVIGGLAFGGWKILH
CCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
EVQQVTFAPVEQTPEVLAELDPLETASLVASDLTEDPASEALDRLYRPQALDVPVLVARD
HHHHHHCCCHHCCHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEEECC
APISTLDPRAHGNFAGFEQPGISLADAMVPANEQTDLAVPQVLEARAPSVEMIAVRPSWV
CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHCCCCCEEEEEECCCEE
QVKAADGSVIFETIMEPGQTFDVPLTEDAPRLRTGESSAIYFAVNGEHYGPVGGRGQVTK
EEEECCCCHHHHHHHCCCCEECCCCCCCCCCCCCCCCCEEEEEECCCEECCCCCCCCEEC
DVELSPDALSGRFEIADLEAEQNQALATMVAQLRATQQTPVDSAD
CCCCCCHHHCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MIGRLTQRTFGRRDETPEPPRGFDDFELRLGDMMRGERATMGKSLLDVQRELRIKASYID
CCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
AIENCDPSVFDTPGFIAGYVRSYARYLNMDPEKAFGAFCAESGFSVAHGMSSEASVRKPR
HHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCC
DISASSSKGLGGDAFSNSATPFVPVSDGVFSQIDPRAVGSVLVLASVIGGLAFGGWKILH
CCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
EVQQVTFAPVEQTPEVLAELDPLETASLVASDLTEDPASEALDRLYRPQALDVPVLVARD
HHHHHHCCCHHCCHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEEECC
APISTLDPRAHGNFAGFEQPGISLADAMVPANEQTDLAVPQVLEARAPSVEMIAVRPSWV
CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHCCCCCEEEEEECCCEE
QVKAADGSVIFETIMEPGQTFDVPLTEDAPRLRTGESSAIYFAVNGEHYGPVGGRGQVTK
EEEECCCCHHHHHHHCCCCEECCCCCCCCCCCCCCCCCEEEEEECCCEECCCCCCCCEEC
DVELSPDALSGRFEIADLEAEQNQALATMVAQLRATQQTPVDSAD
CCCCCCHHHCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA