| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is 99080674
Identifier: 99080674
GI number: 99080674
Start: 875521
End: 877938
Strand: Direct
Name: 99080674
Synonym: TM1040_0833
Alternate gene names: NA
Gene position: 875521-877938 (Clockwise)
Preceding gene: 99080673
Following gene: 99080680
Centisome position: 27.35
GC content: 64.35
Gene sequence:
>2418_bases ATGTTTGCGAAACTAGAAACATATCCCGCCGCGTTGCTCGAACTGGTTGCAACCGCGAATGACGCAGCCAAGGCCATCCC GCCCCTGTTCCCGCTGTCCTCGAGCGTGGCGGTCAACCCCTTCCTTGGCCAAACCGAGGAGCCGCTCGCGGTGACAGCGG CACGGCTGGCGCGGGTCGGAGGCACCAAGATCATGCCGGAGCGGGCGCATTGGGCGGCCAAGCTTGAGGCAGGCGACATC ACTGAGACCGACCTGACCGAGGCCCTCGCAGCACTGAAGGGGCGGTTCAACTGCCCCAGCCTTGACGACGTCAAAGCCGC CTTGACGGTTCCATCGCCCACTCCACAAGCCTTGCCGACCGTCGCAGAGCTTGCGGCGGATGTGTCGGGACTGGATTGGC CTGCCCTGATCGAGGATCGGATCAGCGCATGGGCCGCAGGGCATTTTGACGAGGGGCAGGCGCTCTGGCAGCAGGCCAAG ACCGGCGGCACTTTCAGCGCATGGCGCGATTTTGCAGCGCGCGATCTCACGCCGGAAATTCAAGGTCTGAGCGGCTTCTG CGCCTTTGTGGCGGCTACCAACCGCTCGCATTGGCGGGCGATCGGACGGGCGTCTGAGCGGCTGAACCTCGGCACCGAAG CCGCGTCGACCGCCTTTCACCGCTGGCTGATGACGCTGGGTGGCTGGGCTCAATATGGTCGCTACCTTCTGTGGCAGGAC GAGCTGAACGGCGCGCAGAACAGCACCGTAACCGAGCTTCTGGCCATTCGGATGGTCTTTGATGAGGCGCTCTTTGCGCT TTATGAAGACCAGATTTCCGCACGTTGGGCAGAAGTGGTCGCGGCGCATCAAACGCCGGTGACGCCGACGCCGGATCTGG TCATTGATGCGATCTGGCAGGACGCGGCAGAGCGGGCCGAACAGAGACGGCTTGCCGAGACACTGCAGTCGGGGGCAGTG CAACCGGTAGAGGGACGCGCCGAGGTACAGGCGGCCTTTTGTATCGACGTGCGCTCCGAGGTGTTCCGTCGGGCGCTCGA GGCTCAGGATCGGCAGATCGAAACCCTCGGGTTTGCCGGATTCTTTGGTCTCGCGAGCGCGCACAAGGCGGCGGGCTCTG ATGTGGTCGAGACGCGCGGCCCTGTGTTGCTGCAGGCGGGCGTTTCCTCACAGGCGAAGGAGGCCGAAGAGCTTGATCTT GACCGGCGCTACAGTGCGCGGGCCAAGCGGGCCTGGGGCCGGTTCAAGTTGGCCGCGGTGTCCTCCTTTGCCTTTGTCGA AGCAAGCGGGCCGCTCTATGCAGGTGAACTGATCCGGGACTCGTTGCTCTTGGGCGGAAAAACCAAGGCGGAGCCTGCGC CTGCGCTTGACCCATCGATCAGCCTTGCGACCCGCATTCAGATGGCAAAAACGGTGCTGACAGCGATGTCGCTCACCAGC GATTTTGCAAAGCTTGTGGTTCTCGCGGGCCATGGTGCCGATGTGACCAACAGCCCGCATGAAAGCGCGCTTCAATGTGG GGCCTGCGGTGGACATGCCGGGGACGTGAACGCGCGTCTTCTGGCGGCGCTCCTGAACGACCGGGACGTGCAGAAAGGCC TGCGTGATCAGGGGATCGAAATCCCCTCTGACACGGTGTTCCTACCTGCGCTGCATCACACCACAACCGATGAGGTCACG CTCTACGAGCAGGATCTGTCCTCCTATGCGCTGCAGATCTCCGAGGCGACACGGGGAAAGCTTAAGGGGTGGCTGACCGA GGCCGGACGTCTGGCACGGGCTGAGCGCGCCCAGCGGTTGCCCCGGGCCTCGAGCGAAGCATCGGTCCACATGCGGGCCC GCGATTGGGCCGAGACCCGGCCGGAATGGGGCCTTGCGGGCTGTCGCGCCTTTGTGGCGGCCCCCCGTGCACGCACCAGC GGCGCCGATCTTGGCGGGCAGGCGTTCCTGCACAACTACGTCTGGCAGCGCGATGAGGGCTTCGGCGTGCTGGAACTGAT CCTTACGGCTCCGGTGGTGGTCGCAAGCTGGATCAGCCTGCAATACTATGGCTCTACCGTAGCGCCTGCGCAGTTTGGTG GCGGCAACAAGCTGTTGCACAACGTCGTCGGAGGCATCGGCGTGCTTGAGGGCAACACCGGTGCACCCCGCGCGGGCCTG CCGTGGCAGTCGGTGCATGACGGTGACAAGGTGCAGCATGATCCGCTGCGGCTCTCGGTCGTGATCGAGGCGCCACGCGA AGCGATGTCAGAGATCCTCTCGCGGCACCCCGGCGTGCGGGCACTCTTTGACAATGGCTGGCTACATCTCATTGCGATGG ATGACGAGGGCAAGCTGGCCTGGCGCTATCGCGGAGATCTGAAATGGTCGCGCTTTGATGCCCCACAGTCCACGCCGAGC GCCTTGGCGGCCGAGTAA
Upstream 100 bases:
>100_bases TGCGGGTCCATCTGACCAACGGGCTTTATGCCAATGCGATCTTTGACAAGCTGCTGGACGGTTGGTCCAAGCGCGCTGCA ACCTGAAAGGACACGAGACA
Downstream 100 bases:
>100_bases CTCATTGGAAGTGATAGGTAAAAGCCCCGAACGTCGCTCTGACGCTCGGGGCTTTTCTTACCTGTTTGCGGGGGTAATCA AGCCTCCCAGGTCAGGCGAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 805; Mature: 805
Protein sequence:
>805_residues MFAKLETYPAALLELVATANDAAKAIPPLFPLSSSVAVNPFLGQTEEPLAVTAARLARVGGTKIMPERAHWAAKLEAGDI TETDLTEALAALKGRFNCPSLDDVKAALTVPSPTPQALPTVAELAADVSGLDWPALIEDRISAWAAGHFDEGQALWQQAK TGGTFSAWRDFAARDLTPEIQGLSGFCAFVAATNRSHWRAIGRASERLNLGTEAASTAFHRWLMTLGGWAQYGRYLLWQD ELNGAQNSTVTELLAIRMVFDEALFALYEDQISARWAEVVAAHQTPVTPTPDLVIDAIWQDAAERAEQRRLAETLQSGAV QPVEGRAEVQAAFCIDVRSEVFRRALEAQDRQIETLGFAGFFGLASAHKAAGSDVVETRGPVLLQAGVSSQAKEAEELDL DRRYSARAKRAWGRFKLAAVSSFAFVEASGPLYAGELIRDSLLLGGKTKAEPAPALDPSISLATRIQMAKTVLTAMSLTS DFAKLVVLAGHGADVTNSPHESALQCGACGGHAGDVNARLLAALLNDRDVQKGLRDQGIEIPSDTVFLPALHHTTTDEVT LYEQDLSSYALQISEATRGKLKGWLTEAGRLARAERAQRLPRASSEASVHMRARDWAETRPEWGLAGCRAFVAAPRARTS GADLGGQAFLHNYVWQRDEGFGVLELILTAPVVVASWISLQYYGSTVAPAQFGGGNKLLHNVVGGIGVLEGNTGAPRAGL PWQSVHDGDKVQHDPLRLSVVIEAPREAMSEILSRHPGVRALFDNGWLHLIAMDDEGKLAWRYRGDLKWSRFDAPQSTPS ALAAE
Sequences:
>Translated_805_residues MFAKLETYPAALLELVATANDAAKAIPPLFPLSSSVAVNPFLGQTEEPLAVTAARLARVGGTKIMPERAHWAAKLEAGDI TETDLTEALAALKGRFNCPSLDDVKAALTVPSPTPQALPTVAELAADVSGLDWPALIEDRISAWAAGHFDEGQALWQQAK TGGTFSAWRDFAARDLTPEIQGLSGFCAFVAATNRSHWRAIGRASERLNLGTEAASTAFHRWLMTLGGWAQYGRYLLWQD ELNGAQNSTVTELLAIRMVFDEALFALYEDQISARWAEVVAAHQTPVTPTPDLVIDAIWQDAAERAEQRRLAETLQSGAV QPVEGRAEVQAAFCIDVRSEVFRRALEAQDRQIETLGFAGFFGLASAHKAAGSDVVETRGPVLLQAGVSSQAKEAEELDL DRRYSARAKRAWGRFKLAAVSSFAFVEASGPLYAGELIRDSLLLGGKTKAEPAPALDPSISLATRIQMAKTVLTAMSLTS DFAKLVVLAGHGADVTNSPHESALQCGACGGHAGDVNARLLAALLNDRDVQKGLRDQGIEIPSDTVFLPALHHTTTDEVT LYEQDLSSYALQISEATRGKLKGWLTEAGRLARAERAQRLPRASSEASVHMRARDWAETRPEWGLAGCRAFVAAPRARTS GADLGGQAFLHNYVWQRDEGFGVLELILTAPVVVASWISLQYYGSTVAPAQFGGGNKLLHNVVGGIGVLEGNTGAPRAGL PWQSVHDGDKVQHDPLRLSVVIEAPREAMSEILSRHPGVRALFDNGWLHLIAMDDEGKLAWRYRGDLKWSRFDAPQSTPS ALAAE >Mature_805_residues MFAKLETYPAALLELVATANDAAKAIPPLFPLSSSVAVNPFLGQTEEPLAVTAARLARVGGTKIMPERAHWAAKLEAGDI TETDLTEALAALKGRFNCPSLDDVKAALTVPSPTPQALPTVAELAADVSGLDWPALIEDRISAWAAGHFDEGQALWQQAK TGGTFSAWRDFAARDLTPEIQGLSGFCAFVAATNRSHWRAIGRASERLNLGTEAASTAFHRWLMTLGGWAQYGRYLLWQD ELNGAQNSTVTELLAIRMVFDEALFALYEDQISARWAEVVAAHQTPVTPTPDLVIDAIWQDAAERAEQRRLAETLQSGAV QPVEGRAEVQAAFCIDVRSEVFRRALEAQDRQIETLGFAGFFGLASAHKAAGSDVVETRGPVLLQAGVSSQAKEAEELDL DRRYSARAKRAWGRFKLAAVSSFAFVEASGPLYAGELIRDSLLLGGKTKAEPAPALDPSISLATRIQMAKTVLTAMSLTS DFAKLVVLAGHGADVTNSPHESALQCGACGGHAGDVNARLLAALLNDRDVQKGLRDQGIEIPSDTVFLPALHHTTTDEVT LYEQDLSSYALQISEATRGKLKGWLTEAGRLARAERAQRLPRASSEASVHMRARDWAETRPEWGLAGCRAFVAAPRARTS GADLGGQAFLHNYVWQRDEGFGVLELILTAPVVVASWISLQYYGSTVAPAQFGGGNKLLHNVVGGIGVLEGNTGAPRAGL PWQSVHDGDKVQHDPLRLSVVIEAPREAMSEILSRHPGVRALFDNGWLHLIAMDDEGKLAWRYRGDLKWSRFDAPQSTPS ALAAE
Specific function: Unknown
COG id: COG3002
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0753 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y833_SILST (Q1GIF0)
Other databases:
- EMBL: CP000377 - RefSeq: YP_612828.1 - STRING: Q1GIF0 - GeneID: 4077539 - GenomeReviews: CP000377_GR - KEGG: sit:TM1040_0833 - NMPDR: fig|292414.1.peg.2920 - eggNOG: COG3002 - HOGENOM: HBG520117 - OMA: LWQAELS - ProtClustDB: CLSK924243 - BioCyc: SSP292414:TM1040_0833-MONOMER - HAMAP: MF_01871 - InterPro: IPR018752
Pfam domain/function: PF10070 DUF2309
EC number: NA
Molecular weight: Translated: 86787; Mature: 86787
Theoretical pI: Translated: 5.54; Mature: 5.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFAKLETYPAALLELVATANDAAKAIPPLFPLSSSVAVNPFLGQTEEPLAVTAARLARVG CCCCCHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHCC GTKIMPERAHWAAKLEAGDITETDLTEALAALKGRFNCPSLDDVKAALTVPSPTPQALPT CCCCCCCHHHHHEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHH VAELAADVSGLDWPALIEDRISAWAAGHFDEGQALWQQAKTGGTFSAWRDFAARDLTPEI HHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCHH QGLSGFCAFVAATNRSHWRAIGRASERLNLGTEAASTAFHRWLMTLGGWAQYGRYLLWQD CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHCCEEEEEH ELNGAQNSTVTELLAIRMVFDEALFALYEDQISARWAEVVAAHQTPVTPTPDLVIDAIWQ HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH DAAERAEQRRLAETLQSGAVQPVEGRAEVQAAFCIDVRSEVFRRALEAQDRQIETLGFAG HHHHHHHHHHHHHHHHHCCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH FFGLASAHKAAGSDVVETRGPVLLQAGVSSQAKEAEELDLDRRYSARAKRAWGRFKLAAV HHHHHHHHHHCCCCHHHCCCCEEEECCCCCHHHHHHHHCHHHHHHHHHHHHHCCEEEEHH SSFAFVEASGPLYAGELIRDSLLLGGKTKAEPAPALDPSISLATRIQMAKTVLTAMSLTS HHEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH DFAKLVVLAGHGADVTNSPHESALQCGACGGHAGDVNARLLAALLNDRDVQKGLRDQGIE HHHEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCC IPSDTVFLPALHHTTTDEVTLYEQDLSSYALQISEATRGKLKGWLTEAGRLARAERAQRL CCCCCEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC PRASSEASVHMRARDWAETRPEWGLAGCRAFVAAPRARTSGADLGGQAFLHNYVWQRDEG CCCCCCCEEEEEHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCC FGVLELILTAPVVVASWISLQYYGSTVAPAQFGGGNKLLHNVVGGIGVLEGNTGAPRAGL CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCCCCCC PWQSVHDGDKVQHDPLRLSVVIEAPREAMSEILSRHPGVRALFDNGWLHLIAMDDEGKLA CCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEECCCCEEEEEECCCCCEE WRYRGDLKWSRFDAPQSTPSALAAE EEEECCCCCCCCCCCCCCCCHHCCC >Mature Secondary Structure MFAKLETYPAALLELVATANDAAKAIPPLFPLSSSVAVNPFLGQTEEPLAVTAARLARVG CCCCCHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHCC GTKIMPERAHWAAKLEAGDITETDLTEALAALKGRFNCPSLDDVKAALTVPSPTPQALPT CCCCCCCHHHHHEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHH VAELAADVSGLDWPALIEDRISAWAAGHFDEGQALWQQAKTGGTFSAWRDFAARDLTPEI HHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCHH QGLSGFCAFVAATNRSHWRAIGRASERLNLGTEAASTAFHRWLMTLGGWAQYGRYLLWQD CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHCCEEEEEH ELNGAQNSTVTELLAIRMVFDEALFALYEDQISARWAEVVAAHQTPVTPTPDLVIDAIWQ HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH DAAERAEQRRLAETLQSGAVQPVEGRAEVQAAFCIDVRSEVFRRALEAQDRQIETLGFAG HHHHHHHHHHHHHHHHHCCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH FFGLASAHKAAGSDVVETRGPVLLQAGVSSQAKEAEELDLDRRYSARAKRAWGRFKLAAV HHHHHHHHHHCCCCHHHCCCCEEEECCCCCHHHHHHHHCHHHHHHHHHHHHHCCEEEEHH SSFAFVEASGPLYAGELIRDSLLLGGKTKAEPAPALDPSISLATRIQMAKTVLTAMSLTS HHEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH DFAKLVVLAGHGADVTNSPHESALQCGACGGHAGDVNARLLAALLNDRDVQKGLRDQGIE HHHEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCC IPSDTVFLPALHHTTTDEVTLYEQDLSSYALQISEATRGKLKGWLTEAGRLARAERAQRL CCCCCEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC PRASSEASVHMRARDWAETRPEWGLAGCRAFVAAPRARTSGADLGGQAFLHNYVWQRDEG CCCCCCCEEEEEHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCC FGVLELILTAPVVVASWISLQYYGSTVAPAQFGGGNKLLHNVVGGIGVLEGNTGAPRAGL CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCCCCCC PWQSVHDGDKVQHDPLRLSVVIEAPREAMSEILSRHPGVRALFDNGWLHLIAMDDEGKLA CCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEECCCCEEEEEECCCCCEE WRYRGDLKWSRFDAPQSTPSALAAE EEEECCCCCCCCCCCCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA