Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080674

Identifier: 99080674

GI number: 99080674

Start: 875521

End: 877938

Strand: Direct

Name: 99080674

Synonym: TM1040_0833

Alternate gene names: NA

Gene position: 875521-877938 (Clockwise)

Preceding gene: 99080673

Following gene: 99080680

Centisome position: 27.35

GC content: 64.35

Gene sequence:

>2418_bases
ATGTTTGCGAAACTAGAAACATATCCCGCCGCGTTGCTCGAACTGGTTGCAACCGCGAATGACGCAGCCAAGGCCATCCC
GCCCCTGTTCCCGCTGTCCTCGAGCGTGGCGGTCAACCCCTTCCTTGGCCAAACCGAGGAGCCGCTCGCGGTGACAGCGG
CACGGCTGGCGCGGGTCGGAGGCACCAAGATCATGCCGGAGCGGGCGCATTGGGCGGCCAAGCTTGAGGCAGGCGACATC
ACTGAGACCGACCTGACCGAGGCCCTCGCAGCACTGAAGGGGCGGTTCAACTGCCCCAGCCTTGACGACGTCAAAGCCGC
CTTGACGGTTCCATCGCCCACTCCACAAGCCTTGCCGACCGTCGCAGAGCTTGCGGCGGATGTGTCGGGACTGGATTGGC
CTGCCCTGATCGAGGATCGGATCAGCGCATGGGCCGCAGGGCATTTTGACGAGGGGCAGGCGCTCTGGCAGCAGGCCAAG
ACCGGCGGCACTTTCAGCGCATGGCGCGATTTTGCAGCGCGCGATCTCACGCCGGAAATTCAAGGTCTGAGCGGCTTCTG
CGCCTTTGTGGCGGCTACCAACCGCTCGCATTGGCGGGCGATCGGACGGGCGTCTGAGCGGCTGAACCTCGGCACCGAAG
CCGCGTCGACCGCCTTTCACCGCTGGCTGATGACGCTGGGTGGCTGGGCTCAATATGGTCGCTACCTTCTGTGGCAGGAC
GAGCTGAACGGCGCGCAGAACAGCACCGTAACCGAGCTTCTGGCCATTCGGATGGTCTTTGATGAGGCGCTCTTTGCGCT
TTATGAAGACCAGATTTCCGCACGTTGGGCAGAAGTGGTCGCGGCGCATCAAACGCCGGTGACGCCGACGCCGGATCTGG
TCATTGATGCGATCTGGCAGGACGCGGCAGAGCGGGCCGAACAGAGACGGCTTGCCGAGACACTGCAGTCGGGGGCAGTG
CAACCGGTAGAGGGACGCGCCGAGGTACAGGCGGCCTTTTGTATCGACGTGCGCTCCGAGGTGTTCCGTCGGGCGCTCGA
GGCTCAGGATCGGCAGATCGAAACCCTCGGGTTTGCCGGATTCTTTGGTCTCGCGAGCGCGCACAAGGCGGCGGGCTCTG
ATGTGGTCGAGACGCGCGGCCCTGTGTTGCTGCAGGCGGGCGTTTCCTCACAGGCGAAGGAGGCCGAAGAGCTTGATCTT
GACCGGCGCTACAGTGCGCGGGCCAAGCGGGCCTGGGGCCGGTTCAAGTTGGCCGCGGTGTCCTCCTTTGCCTTTGTCGA
AGCAAGCGGGCCGCTCTATGCAGGTGAACTGATCCGGGACTCGTTGCTCTTGGGCGGAAAAACCAAGGCGGAGCCTGCGC
CTGCGCTTGACCCATCGATCAGCCTTGCGACCCGCATTCAGATGGCAAAAACGGTGCTGACAGCGATGTCGCTCACCAGC
GATTTTGCAAAGCTTGTGGTTCTCGCGGGCCATGGTGCCGATGTGACCAACAGCCCGCATGAAAGCGCGCTTCAATGTGG
GGCCTGCGGTGGACATGCCGGGGACGTGAACGCGCGTCTTCTGGCGGCGCTCCTGAACGACCGGGACGTGCAGAAAGGCC
TGCGTGATCAGGGGATCGAAATCCCCTCTGACACGGTGTTCCTACCTGCGCTGCATCACACCACAACCGATGAGGTCACG
CTCTACGAGCAGGATCTGTCCTCCTATGCGCTGCAGATCTCCGAGGCGACACGGGGAAAGCTTAAGGGGTGGCTGACCGA
GGCCGGACGTCTGGCACGGGCTGAGCGCGCCCAGCGGTTGCCCCGGGCCTCGAGCGAAGCATCGGTCCACATGCGGGCCC
GCGATTGGGCCGAGACCCGGCCGGAATGGGGCCTTGCGGGCTGTCGCGCCTTTGTGGCGGCCCCCCGTGCACGCACCAGC
GGCGCCGATCTTGGCGGGCAGGCGTTCCTGCACAACTACGTCTGGCAGCGCGATGAGGGCTTCGGCGTGCTGGAACTGAT
CCTTACGGCTCCGGTGGTGGTCGCAAGCTGGATCAGCCTGCAATACTATGGCTCTACCGTAGCGCCTGCGCAGTTTGGTG
GCGGCAACAAGCTGTTGCACAACGTCGTCGGAGGCATCGGCGTGCTTGAGGGCAACACCGGTGCACCCCGCGCGGGCCTG
CCGTGGCAGTCGGTGCATGACGGTGACAAGGTGCAGCATGATCCGCTGCGGCTCTCGGTCGTGATCGAGGCGCCACGCGA
AGCGATGTCAGAGATCCTCTCGCGGCACCCCGGCGTGCGGGCACTCTTTGACAATGGCTGGCTACATCTCATTGCGATGG
ATGACGAGGGCAAGCTGGCCTGGCGCTATCGCGGAGATCTGAAATGGTCGCGCTTTGATGCCCCACAGTCCACGCCGAGC
GCCTTGGCGGCCGAGTAA

Upstream 100 bases:

>100_bases
TGCGGGTCCATCTGACCAACGGGCTTTATGCCAATGCGATCTTTGACAAGCTGCTGGACGGTTGGTCCAAGCGCGCTGCA
ACCTGAAAGGACACGAGACA

Downstream 100 bases:

>100_bases
CTCATTGGAAGTGATAGGTAAAAGCCCCGAACGTCGCTCTGACGCTCGGGGCTTTTCTTACCTGTTTGCGGGGGTAATCA
AGCCTCCCAGGTCAGGCGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 805; Mature: 805

Protein sequence:

>805_residues
MFAKLETYPAALLELVATANDAAKAIPPLFPLSSSVAVNPFLGQTEEPLAVTAARLARVGGTKIMPERAHWAAKLEAGDI
TETDLTEALAALKGRFNCPSLDDVKAALTVPSPTPQALPTVAELAADVSGLDWPALIEDRISAWAAGHFDEGQALWQQAK
TGGTFSAWRDFAARDLTPEIQGLSGFCAFVAATNRSHWRAIGRASERLNLGTEAASTAFHRWLMTLGGWAQYGRYLLWQD
ELNGAQNSTVTELLAIRMVFDEALFALYEDQISARWAEVVAAHQTPVTPTPDLVIDAIWQDAAERAEQRRLAETLQSGAV
QPVEGRAEVQAAFCIDVRSEVFRRALEAQDRQIETLGFAGFFGLASAHKAAGSDVVETRGPVLLQAGVSSQAKEAEELDL
DRRYSARAKRAWGRFKLAAVSSFAFVEASGPLYAGELIRDSLLLGGKTKAEPAPALDPSISLATRIQMAKTVLTAMSLTS
DFAKLVVLAGHGADVTNSPHESALQCGACGGHAGDVNARLLAALLNDRDVQKGLRDQGIEIPSDTVFLPALHHTTTDEVT
LYEQDLSSYALQISEATRGKLKGWLTEAGRLARAERAQRLPRASSEASVHMRARDWAETRPEWGLAGCRAFVAAPRARTS
GADLGGQAFLHNYVWQRDEGFGVLELILTAPVVVASWISLQYYGSTVAPAQFGGGNKLLHNVVGGIGVLEGNTGAPRAGL
PWQSVHDGDKVQHDPLRLSVVIEAPREAMSEILSRHPGVRALFDNGWLHLIAMDDEGKLAWRYRGDLKWSRFDAPQSTPS
ALAAE

Sequences:

>Translated_805_residues
MFAKLETYPAALLELVATANDAAKAIPPLFPLSSSVAVNPFLGQTEEPLAVTAARLARVGGTKIMPERAHWAAKLEAGDI
TETDLTEALAALKGRFNCPSLDDVKAALTVPSPTPQALPTVAELAADVSGLDWPALIEDRISAWAAGHFDEGQALWQQAK
TGGTFSAWRDFAARDLTPEIQGLSGFCAFVAATNRSHWRAIGRASERLNLGTEAASTAFHRWLMTLGGWAQYGRYLLWQD
ELNGAQNSTVTELLAIRMVFDEALFALYEDQISARWAEVVAAHQTPVTPTPDLVIDAIWQDAAERAEQRRLAETLQSGAV
QPVEGRAEVQAAFCIDVRSEVFRRALEAQDRQIETLGFAGFFGLASAHKAAGSDVVETRGPVLLQAGVSSQAKEAEELDL
DRRYSARAKRAWGRFKLAAVSSFAFVEASGPLYAGELIRDSLLLGGKTKAEPAPALDPSISLATRIQMAKTVLTAMSLTS
DFAKLVVLAGHGADVTNSPHESALQCGACGGHAGDVNARLLAALLNDRDVQKGLRDQGIEIPSDTVFLPALHHTTTDEVT
LYEQDLSSYALQISEATRGKLKGWLTEAGRLARAERAQRLPRASSEASVHMRARDWAETRPEWGLAGCRAFVAAPRARTS
GADLGGQAFLHNYVWQRDEGFGVLELILTAPVVVASWISLQYYGSTVAPAQFGGGNKLLHNVVGGIGVLEGNTGAPRAGL
PWQSVHDGDKVQHDPLRLSVVIEAPREAMSEILSRHPGVRALFDNGWLHLIAMDDEGKLAWRYRGDLKWSRFDAPQSTPS
ALAAE
>Mature_805_residues
MFAKLETYPAALLELVATANDAAKAIPPLFPLSSSVAVNPFLGQTEEPLAVTAARLARVGGTKIMPERAHWAAKLEAGDI
TETDLTEALAALKGRFNCPSLDDVKAALTVPSPTPQALPTVAELAADVSGLDWPALIEDRISAWAAGHFDEGQALWQQAK
TGGTFSAWRDFAARDLTPEIQGLSGFCAFVAATNRSHWRAIGRASERLNLGTEAASTAFHRWLMTLGGWAQYGRYLLWQD
ELNGAQNSTVTELLAIRMVFDEALFALYEDQISARWAEVVAAHQTPVTPTPDLVIDAIWQDAAERAEQRRLAETLQSGAV
QPVEGRAEVQAAFCIDVRSEVFRRALEAQDRQIETLGFAGFFGLASAHKAAGSDVVETRGPVLLQAGVSSQAKEAEELDL
DRRYSARAKRAWGRFKLAAVSSFAFVEASGPLYAGELIRDSLLLGGKTKAEPAPALDPSISLATRIQMAKTVLTAMSLTS
DFAKLVVLAGHGADVTNSPHESALQCGACGGHAGDVNARLLAALLNDRDVQKGLRDQGIEIPSDTVFLPALHHTTTDEVT
LYEQDLSSYALQISEATRGKLKGWLTEAGRLARAERAQRLPRASSEASVHMRARDWAETRPEWGLAGCRAFVAAPRARTS
GADLGGQAFLHNYVWQRDEGFGVLELILTAPVVVASWISLQYYGSTVAPAQFGGGNKLLHNVVGGIGVLEGNTGAPRAGL
PWQSVHDGDKVQHDPLRLSVVIEAPREAMSEILSRHPGVRALFDNGWLHLIAMDDEGKLAWRYRGDLKWSRFDAPQSTPS
ALAAE

Specific function: Unknown

COG id: COG3002

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0753 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y833_SILST (Q1GIF0)

Other databases:

- EMBL:   CP000377
- RefSeq:   YP_612828.1
- STRING:   Q1GIF0
- GeneID:   4077539
- GenomeReviews:   CP000377_GR
- KEGG:   sit:TM1040_0833
- NMPDR:   fig|292414.1.peg.2920
- eggNOG:   COG3002
- HOGENOM:   HBG520117
- OMA:   LWQAELS
- ProtClustDB:   CLSK924243
- BioCyc:   SSP292414:TM1040_0833-MONOMER
- HAMAP:   MF_01871
- InterPro:   IPR018752

Pfam domain/function: PF10070 DUF2309

EC number: NA

Molecular weight: Translated: 86787; Mature: 86787

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFAKLETYPAALLELVATANDAAKAIPPLFPLSSSVAVNPFLGQTEEPLAVTAARLARVG
CCCCCHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHCC
GTKIMPERAHWAAKLEAGDITETDLTEALAALKGRFNCPSLDDVKAALTVPSPTPQALPT
CCCCCCCHHHHHEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHH
VAELAADVSGLDWPALIEDRISAWAAGHFDEGQALWQQAKTGGTFSAWRDFAARDLTPEI
HHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCHH
QGLSGFCAFVAATNRSHWRAIGRASERLNLGTEAASTAFHRWLMTLGGWAQYGRYLLWQD
CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHCCEEEEEH
ELNGAQNSTVTELLAIRMVFDEALFALYEDQISARWAEVVAAHQTPVTPTPDLVIDAIWQ
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
DAAERAEQRRLAETLQSGAVQPVEGRAEVQAAFCIDVRSEVFRRALEAQDRQIETLGFAG
HHHHHHHHHHHHHHHHHCCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
FFGLASAHKAAGSDVVETRGPVLLQAGVSSQAKEAEELDLDRRYSARAKRAWGRFKLAAV
HHHHHHHHHHCCCCHHHCCCCEEEECCCCCHHHHHHHHCHHHHHHHHHHHHHCCEEEEHH
SSFAFVEASGPLYAGELIRDSLLLGGKTKAEPAPALDPSISLATRIQMAKTVLTAMSLTS
HHEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
DFAKLVVLAGHGADVTNSPHESALQCGACGGHAGDVNARLLAALLNDRDVQKGLRDQGIE
HHHEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCC
IPSDTVFLPALHHTTTDEVTLYEQDLSSYALQISEATRGKLKGWLTEAGRLARAERAQRL
CCCCCEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PRASSEASVHMRARDWAETRPEWGLAGCRAFVAAPRARTSGADLGGQAFLHNYVWQRDEG
CCCCCCCEEEEEHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCC
FGVLELILTAPVVVASWISLQYYGSTVAPAQFGGGNKLLHNVVGGIGVLEGNTGAPRAGL
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCCCCCC
PWQSVHDGDKVQHDPLRLSVVIEAPREAMSEILSRHPGVRALFDNGWLHLIAMDDEGKLA
CCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEECCCCEEEEEECCCCCEE
WRYRGDLKWSRFDAPQSTPSALAAE
EEEECCCCCCCCCCCCCCCCHHCCC
>Mature Secondary Structure
MFAKLETYPAALLELVATANDAAKAIPPLFPLSSSVAVNPFLGQTEEPLAVTAARLARVG
CCCCCHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHCC
GTKIMPERAHWAAKLEAGDITETDLTEALAALKGRFNCPSLDDVKAALTVPSPTPQALPT
CCCCCCCHHHHHEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHH
VAELAADVSGLDWPALIEDRISAWAAGHFDEGQALWQQAKTGGTFSAWRDFAARDLTPEI
HHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCHH
QGLSGFCAFVAATNRSHWRAIGRASERLNLGTEAASTAFHRWLMTLGGWAQYGRYLLWQD
CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHCCEEEEEH
ELNGAQNSTVTELLAIRMVFDEALFALYEDQISARWAEVVAAHQTPVTPTPDLVIDAIWQ
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
DAAERAEQRRLAETLQSGAVQPVEGRAEVQAAFCIDVRSEVFRRALEAQDRQIETLGFAG
HHHHHHHHHHHHHHHHHCCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
FFGLASAHKAAGSDVVETRGPVLLQAGVSSQAKEAEELDLDRRYSARAKRAWGRFKLAAV
HHHHHHHHHHCCCCHHHCCCCEEEECCCCCHHHHHHHHCHHHHHHHHHHHHHCCEEEEHH
SSFAFVEASGPLYAGELIRDSLLLGGKTKAEPAPALDPSISLATRIQMAKTVLTAMSLTS
HHEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
DFAKLVVLAGHGADVTNSPHESALQCGACGGHAGDVNARLLAALLNDRDVQKGLRDQGIE
HHHEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCC
IPSDTVFLPALHHTTTDEVTLYEQDLSSYALQISEATRGKLKGWLTEAGRLARAERAQRL
CCCCCEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PRASSEASVHMRARDWAETRPEWGLAGCRAFVAAPRARTSGADLGGQAFLHNYVWQRDEG
CCCCCCCEEEEEHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCC
FGVLELILTAPVVVASWISLQYYGSTVAPAQFGGGNKLLHNVVGGIGVLEGNTGAPRAGL
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCCCCCC
PWQSVHDGDKVQHDPLRLSVVIEAPREAMSEILSRHPGVRALFDNGWLHLIAMDDEGKLA
CCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEECCCCEEEEEECCCCCEE
WRYRGDLKWSRFDAPQSTPSALAAE
EEEECCCCCCCCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA