| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is lon [H]
Identifier: 99080616
GI number: 99080616
Start: 829194
End: 831602
Strand: Direct
Name: lon [H]
Synonym: TM1040_0775
Alternate gene names: 99080616
Gene position: 829194-831602 (Clockwise)
Preceding gene: 99080615
Following gene: 99080631
Centisome position: 25.9
GC content: 58.7
Gene sequence:
>2409_bases ATGCAAGAGCCTCTCAATTCCTCCTACCCCGTACTGCCGCTGCGCGACATTGTGGTCTTTCCCCACATGATCGTGCCGCT GTTCGTGGGCCGGGAGAAGTCGGTACATGCCCTCGAAGAAGTCATGTCCGATGACAAGCAGATCCTCTTGTCCAGCCAGA TCGATCCCTCTGAGGACGACCCGGATCAGGACGGGATCTACCGCACCGGCGTGCTGGCCAATGTTCTGCAACTGCTGAAA CTGCCCGATGGTACCGTGAAGGTGCTCGTCGAGGGCCACCAGCGGGTGAAGATCACCGAGTTTCTGGACAATGAGACCTT CTTTGAGGCCCGCGCCGAGGCACTGTCGGAGATGCCAGGCGATGTGACCACCACTGAGGCGCTTTTGCGCGCGGTCGGCG ATGAGTTCGAGCGCTACGCCAAAGTGCGCAAGAACATCCCCGAGGAAGCCCTAACAGCCGTGGGTGAAACCACCGAACCT GCAAAGCTGGCGGACCTCGTGGCCGGTCACTTGGGCATTGAGGTCGAGCGCAAGCAGGAACTGCTTGAGACGCTCCCGAT CAGTGAACGTCTGGAGAAGGTCTATGCCCTGATGCAGTCCGAACTCTCGGTGCTGCAGGTGGAGAAAAAGATCAAGACCC GCGTCAAGACGCAGATGGAGAAGACCCAGCGAGAATACTACCTGAATGAGCAGATGAAAGCCATTCAGAAGGAGCTGGGC GACGGCGAGGATGGCGCTGGCGAAATTGCCGAACTCGAAGAAAAGATCGAAGGCACAAAGCTCTCGAAAGAGGCCCGTGA AAAGGCCGATGCCGAGATCAAGAAGCTCAAGAACATGTCGCCGATGTCGGCCGAGGCCACAGTCGTGCGCAACTATCTTG ACTGGATGCTGTCGATCCCGTGGGGCACCAAATCCCGCGTCAAAAAAGACCTTGGGCGCGCGCAGGACATCCTCGACAAG GACCACTATGGCCTTGAAAAGGTGAAGGAGCGCATCGTCGAATATCTCGCGGTTCAGCAGCGTTCTGCCAAACTCAAAGG TCCGATCCTCTGCCTTGTTGGCCCTCCAGGAGTGGGTAAAACCTCGCTGGGCAAATCCGTGGCCAAGGCGACGGGGCGCG AGTTCATCCGGATTTCTCTGGGTGGCGTGCGCGACGAGTCCGAGATCCGCGGCCACCGCCGGACCTACATCGGCTCCATG CCGGGCAAGATTATTCAGGCGCTGAAAAAGGCCAAGACGACGAACCCGCTCATTCTGCTCGACGAGATCGACAAGATGGG CCAGGACTTCCGTGGGGACCCGGCTTCTGCGATGCTCGAAGTGCTTGATCCGGAACAGAATTCCACCTTTGTGGATCACT ATCTGGAGGTCGAATATGACCTCTCGAACGTGATGTTCCTGACCACCTCGAACAGCTACAACATGCCGGGCCCGCTCTTG GACCGGATGGAGATCATTCCGCTCTCCGGCTACACCGAGGACGAGAAACGCGAGATTTCCAAGCAGCACCTGATTTCCAA GCAGGTGAAGAACCACGGCCTCAAAGCTAAGGAATTCGAGCTGACCGATGAGGCCCTCACCGAGATCATCCGCACCTATA CTCGCGAGGCGGGCGTTCGGAACCTCGAGCGTGAAATCGCCAAAGTGGCCCGCAAGGCGCTGACCTCCATCGTCAAGAAG GAGACCGAAAGCGTGAAGGTCACCCCTGAAAACCTCGGGGATTTCCTGGGCGTTGCAAAATATCGTTATGGTCTTGCAGA GCTTGAGGATCAGGTCGGTGTGGTCACCGGGCTTGCCTATACCTCCGTTGGCGGTGAACTCTTGTCCATCGAGGCGCTGC GCCTGCCGGGCAAGGGCCGGATGAAAACCACCGGTAAGCTGGGCGATGTGATGAAAGAATCCATTGAGGCAGCAAGTTCT TACGTGCGCTCCGTCTCGCCGCGTCTGGGCATCAAACCACCGCGCTTTGACAAATGGGACATCCACGTTCACGTCCCAGA GGGGGCAACACCCAAGGATGGTCCCTCGGCAGGTCTGGCGATGGTGACCTCCATCGTGTCGGTGCTGACAGGAATTCCTG TGCGCAAGGATATCGCCATGACCGGCGAGGTGACGCTGCGCGGCAATGCCCTCGCCATCGGGGGGCTGAAAGAAAAACTG CTCGCAGCCTTGCGTGGCGGTATCAAAACCGTTCTCATCCCCAAGGAGAACGAAAAAGACCTGCCCGAGATCCCGGACAA CGTGAAAGAAGGGCTGGAGATCATCCCGGTCGATCACGTCTCCGAGGTTCTTAAGCATGCGCTGGTGAGCCAACCCGAAG CGATTGAGTGGGACGAGGAGGCTGAAGAGGCCGCCGCCGCTGCCGCTGCGCTCAAGGGTGGCGACGCAAGCGGGGCAACG GCGCACTAA
Upstream 100 bases:
>100_bases ATCTCGGCCCGCCTGACCAGATAAATAATCCGAGTGAGGAGACGACCGCGGTTGCCGATAAATCGGGGCCTGGCCGTCTT GCTAAGAAAAAGGACCGAGT
Downstream 100 bases:
>100_bases AGATCTGCGGTGAGCCGATATTGATTGAAGGCGTCCCGGTATCGGGGCGCCTTTTTTGTAGAAGAAGCGAGGCTCTGCCT CGCGCTCCGGGATATTGGAA
Product: Lon-A peptidase
Products: NA
Alternate protein names: ATP-dependent protease La [H]
Number of amino acids: Translated: 802; Mature: 802
Protein sequence:
>802_residues MQEPLNSSYPVLPLRDIVVFPHMIVPLFVGREKSVHALEEVMSDDKQILLSSQIDPSEDDPDQDGIYRTGVLANVLQLLK LPDGTVKVLVEGHQRVKITEFLDNETFFEARAEALSEMPGDVTTTEALLRAVGDEFERYAKVRKNIPEEALTAVGETTEP AKLADLVAGHLGIEVERKQELLETLPISERLEKVYALMQSELSVLQVEKKIKTRVKTQMEKTQREYYLNEQMKAIQKELG DGEDGAGEIAELEEKIEGTKLSKEAREKADAEIKKLKNMSPMSAEATVVRNYLDWMLSIPWGTKSRVKKDLGRAQDILDK DHYGLEKVKERIVEYLAVQQRSAKLKGPILCLVGPPGVGKTSLGKSVAKATGREFIRISLGGVRDESEIRGHRRTYIGSM PGKIIQALKKAKTTNPLILLDEIDKMGQDFRGDPASAMLEVLDPEQNSTFVDHYLEVEYDLSNVMFLTTSNSYNMPGPLL DRMEIIPLSGYTEDEKREISKQHLISKQVKNHGLKAKEFELTDEALTEIIRTYTREAGVRNLEREIAKVARKALTSIVKK ETESVKVTPENLGDFLGVAKYRYGLAELEDQVGVVTGLAYTSVGGELLSIEALRLPGKGRMKTTGKLGDVMKESIEAASS YVRSVSPRLGIKPPRFDKWDIHVHVPEGATPKDGPSAGLAMVTSIVSVLTGIPVRKDIAMTGEVTLRGNALAIGGLKEKL LAALRGGIKTVLIPKENEKDLPEIPDNVKEGLEIIPVDHVSEVLKHALVSQPEAIEWDEEAEEAAAAAAALKGGDASGAT AH
Sequences:
>Translated_802_residues MQEPLNSSYPVLPLRDIVVFPHMIVPLFVGREKSVHALEEVMSDDKQILLSSQIDPSEDDPDQDGIYRTGVLANVLQLLK LPDGTVKVLVEGHQRVKITEFLDNETFFEARAEALSEMPGDVTTTEALLRAVGDEFERYAKVRKNIPEEALTAVGETTEP AKLADLVAGHLGIEVERKQELLETLPISERLEKVYALMQSELSVLQVEKKIKTRVKTQMEKTQREYYLNEQMKAIQKELG DGEDGAGEIAELEEKIEGTKLSKEAREKADAEIKKLKNMSPMSAEATVVRNYLDWMLSIPWGTKSRVKKDLGRAQDILDK DHYGLEKVKERIVEYLAVQQRSAKLKGPILCLVGPPGVGKTSLGKSVAKATGREFIRISLGGVRDESEIRGHRRTYIGSM PGKIIQALKKAKTTNPLILLDEIDKMGQDFRGDPASAMLEVLDPEQNSTFVDHYLEVEYDLSNVMFLTTSNSYNMPGPLL DRMEIIPLSGYTEDEKREISKQHLISKQVKNHGLKAKEFELTDEALTEIIRTYTREAGVRNLEREIAKVARKALTSIVKK ETESVKVTPENLGDFLGVAKYRYGLAELEDQVGVVTGLAYTSVGGELLSIEALRLPGKGRMKTTGKLGDVMKESIEAASS YVRSVSPRLGIKPPRFDKWDIHVHVPEGATPKDGPSAGLAMVTSIVSVLTGIPVRKDIAMTGEVTLRGNALAIGGLKEKL LAALRGGIKTVLIPKENEKDLPEIPDNVKEGLEIIPVDHVSEVLKHALVSQPEAIEWDEEAEEAAAAAAALKGGDASGAT AH >Mature_802_residues MQEPLNSSYPVLPLRDIVVFPHMIVPLFVGREKSVHALEEVMSDDKQILLSSQIDPSEDDPDQDGIYRTGVLANVLQLLK LPDGTVKVLVEGHQRVKITEFLDNETFFEARAEALSEMPGDVTTTEALLRAVGDEFERYAKVRKNIPEEALTAVGETTEP AKLADLVAGHLGIEVERKQELLETLPISERLEKVYALMQSELSVLQVEKKIKTRVKTQMEKTQREYYLNEQMKAIQKELG DGEDGAGEIAELEEKIEGTKLSKEAREKADAEIKKLKNMSPMSAEATVVRNYLDWMLSIPWGTKSRVKKDLGRAQDILDK DHYGLEKVKERIVEYLAVQQRSAKLKGPILCLVGPPGVGKTSLGKSVAKATGREFIRISLGGVRDESEIRGHRRTYIGSM PGKIIQALKKAKTTNPLILLDEIDKMGQDFRGDPASAMLEVLDPEQNSTFVDHYLEVEYDLSNVMFLTTSNSYNMPGPLL DRMEIIPLSGYTEDEKREISKQHLISKQVKNHGLKAKEFELTDEALTEIIRTYTREAGVRNLEREIAKVARKALTSIVKK ETESVKVTPENLGDFLGVAKYRYGLAELEDQVGVVTGLAYTSVGGELLSIEALRLPGKGRMKTTGKLGDVMKESIEAASS YVRSVSPRLGIKPPRFDKWDIHVHVPEGATPKDGPSAGLAMVTSIVSVLTGIPVRKDIAMTGEVTLRGNALAIGGLKEKL LAALRGGIKTVLIPKENEKDLPEIPDNVKEGLEIIPVDHVSEVLKHALVSQPEAIEWDEEAEEAAAAAAALKGGDASGAT AH
Specific function: ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced
COG id: COG0466
COG function: function code O; ATP-dependent Lon protease, bacterial type
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Lon domain [H]
Homologues:
Organism=Homo sapiens, GI21396489, Length=847, Percent_Identity=38.7249114521842, Blast_Score=547, Evalue=1e-155, Organism=Homo sapiens, GI31377667, Length=775, Percent_Identity=38.3225806451613, Blast_Score=514, Evalue=1e-145, Organism=Escherichia coli, GI1786643, Length=768, Percent_Identity=60.8072916666667, Blast_Score=942, Evalue=0.0, Organism=Caenorhabditis elegans, GI17505831, Length=653, Percent_Identity=42.7258805513017, Blast_Score=505, Evalue=1e-143, Organism=Caenorhabditis elegans, GI17556486, Length=543, Percent_Identity=40.3314917127072, Blast_Score=434, Evalue=1e-122, Organism=Saccharomyces cerevisiae, GI6319449, Length=684, Percent_Identity=41.812865497076, Blast_Score=509, Evalue=1e-145, Organism=Drosophila melanogaster, GI221513036, Length=650, Percent_Identity=44, Blast_Score=529, Evalue=1e-150, Organism=Drosophila melanogaster, GI24666867, Length=650, Percent_Identity=44, Blast_Score=529, Evalue=1e-150,
Paralogues:
None
Copy number: 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR003959 - InterPro: IPR008269 - InterPro: IPR004815 - InterPro: IPR003111 - InterPro: IPR008268 - InterPro: IPR001984 - InterPro: IPR015947 - InterPro: IPR020568 [H]
Pfam domain/function: PF00004 AAA; PF02190 LON; PF05362 Lon_C [H]
EC number: =3.4.21.53 [H]
Molecular weight: Translated: 88421; Mature: 88421
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: PS01046 LON_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQEPLNSSYPVLPLRDIVVFPHMIVPLFVGREKSVHALEEVMSDDKQILLSSQIDPSEDD CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHEEHHCCCCCCCCC PDQDGIYRTGVLANVLQLLKLPDGTVKVLVEGHQRVKITEFLDNETFFEARAEALSEMPG CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCEEEHHHHHCCHHHHHHHHHHHHHCCC DVTTTEALLRAVGDEFERYAKVRKNIPEEALTAVGETTEPAKLADLVAGHLGIEVERKQE CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHH LLETLPISERLEKVYALMQSELSVLQVEKKIKTRVKTQMEKTQREYYLNEQMKAIQKELG HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC DGEDGAGEIAELEEKIEGTKLSKEAREKADAEIKKLKNMSPMSAEATVVRNYLDWMLSIP CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC WGTKSRVKKDLGRAQDILDKDHYGLEKVKERIVEYLAVQQRSAKLKGPILCLVGPPGVGK CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCH TSLGKSVAKATGREFIRISLGGVRDESEIRGHRRTYIGSMPGKIIQALKKAKTTNPLILL HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEH DEIDKMGQDFRGDPASAMLEVLDPEQNSTFVDHYLEVEYDLSNVMFLTTSNSYNMPGPLL HHHHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHHEEEEECCCCEEEEEECCCCCCCCHHH DRMEIIPLSGYTEDEKREISKQHLISKQVKNHGLKAKEFELTDEALTEIIRTYTREAGVR CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHH NLEREIAKVARKALTSIVKKETESVKVTPENLGDFLGVAKYRYGLAELEDQVGVVTGLAY HHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TSVGGELLSIEALRLPGKGRMKTTGKLGDVMKESIEAASSYVRSVSPRLGIKPPRFDKWD HHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE IHVHVPEGATPKDGPSAGLAMVTSIVSVLTGIPVRKDIAMTGEVTLRGNALAIGGLKEKL EEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCCEEEECCHHHHH LAALRGGIKTVLIPKENEKDLPEIPDNVKEGLEIIPVDHVSEVLKHALVSQPEAIEWDEE HHHHHCCCEEEEECCCCCCCCCCCCHHHHCCCEEECHHHHHHHHHHHHHCCCCCCCCCHH AEEAAAAAAALKGGDASGATAH HHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MQEPLNSSYPVLPLRDIVVFPHMIVPLFVGREKSVHALEEVMSDDKQILLSSQIDPSEDD CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHEEHHCCCCCCCCC PDQDGIYRTGVLANVLQLLKLPDGTVKVLVEGHQRVKITEFLDNETFFEARAEALSEMPG CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCEEEHHHHHCCHHHHHHHHHHHHHCCC DVTTTEALLRAVGDEFERYAKVRKNIPEEALTAVGETTEPAKLADLVAGHLGIEVERKQE CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHH LLETLPISERLEKVYALMQSELSVLQVEKKIKTRVKTQMEKTQREYYLNEQMKAIQKELG HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC DGEDGAGEIAELEEKIEGTKLSKEAREKADAEIKKLKNMSPMSAEATVVRNYLDWMLSIP CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC WGTKSRVKKDLGRAQDILDKDHYGLEKVKERIVEYLAVQQRSAKLKGPILCLVGPPGVGK CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCH TSLGKSVAKATGREFIRISLGGVRDESEIRGHRRTYIGSMPGKIIQALKKAKTTNPLILL HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEH DEIDKMGQDFRGDPASAMLEVLDPEQNSTFVDHYLEVEYDLSNVMFLTTSNSYNMPGPLL HHHHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHHEEEEECCCCEEEEEECCCCCCCCHHH DRMEIIPLSGYTEDEKREISKQHLISKQVKNHGLKAKEFELTDEALTEIIRTYTREAGVR CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHH NLEREIAKVARKALTSIVKKETESVKVTPENLGDFLGVAKYRYGLAELEDQVGVVTGLAY HHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TSVGGELLSIEALRLPGKGRMKTTGKLGDVMKESIEAASSYVRSVSPRLGIKPPRFDKWD HHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE IHVHVPEGATPKDGPSAGLAMVTSIVSVLTGIPVRKDIAMTGEVTLRGNALAIGGLKEKL EEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCCEEEECCHHHHH LAALRGGIKTVLIPKENEKDLPEIPDNVKEGLEIIPVDHVSEVLKHALVSQPEAIEWDEE HHHHHCCCEEEEECCCCCCCCCCCCHHHHCCCEEECHHHHHHHHHHHHHCCCCCCCCCHH AEEAAAAAAALKGGDASGATAH HHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10762258; 11481430 [H]