| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is argE [H]
Identifier: 99080558
GI number: 99080558
Start: 773813
End: 774979
Strand: Direct
Name: argE [H]
Synonym: TM1040_0717
Alternate gene names: 99080558
Gene position: 773813-774979 (Clockwise)
Preceding gene: 99080557
Following gene: 99080559
Centisome position: 24.17
GC content: 61.01
Gene sequence:
>1167_bases ATGATCCAACGGCTTTCACCGCTGGAGATCATGATACGTCTGGTCTCCTTTCCGACCGTGAGCAGCGAAACCAATCTGCC GCTCATTGAGTGGACGTCGGAGTATCTGAGCGCGCATGGGATCGAGCATCATGTCTGGATCGATCCCGAACAGCCCGAAA AAGCCGGGCTCTATGCTCATGTTGGCCCGAAGGTCGAAGGCGGAGTCGTGCTGTCGGGGCACACCGATGTTGTGCCCGTC GAGGGACAGGACTGGAGCTCTGACCCATTTGAGGTGGTGGAGCGGGACGGCAAGTATTTTGGCCGTGGCTGCGCGGATAT GAAGGGGTTTGACGCGCTGGCGCTCTGGGCGCTGGTCGAGGGGAACTACACCGATCTGCAGCGCCCGCTTCAGTTGGCCT TCACCTTTGACGAGGAAATTGGCTGCACCGGCGCGCCGCCCCTGATCGAGGAAATGCAGAAATATCTGCCCAAGGCCGAG GCGGTCATCGTGGGCGAGCCGTCGATGCTCAAGGCGGTGACGGGTCACAAGGGCGCCTTTGCGATGGCGACTCATGTGCG CGGCTTTGAGGTTCACAGCTCGCTGATGCATGAAGGTGTGAGCGCCGTGATGGAGGCGGCGCGCATTGTCGACTGGGCCA ACCATCGCAACGCCGAAAACCGCGCAAGGCCCCAGACCGAGGTCGCGGCCATGTTCACGCCGCCCTGGACCACGGTGCAT GTGGGCAAAATATCGGGTGGGACCGCGCATAACATCACGGCAGGGGACTGTAATTTCTGGATGGATTTCCGGGTCGTCCC GGGTGAGAGCCTTGCCGATTGGCAGGCGGCATATGAGGCGGAAATCGCCCGCATCGAGGCCGAGATGCAGAGGGTGCGCC CAGAAGCAGGGATCACGCTTGAAAAAGTCTTTAGCGTGCCGGGGCTCGCGCCGGAGACCGATGGTGCCGCAGAAACATTG GTGCGTGCGCTCACCGGTGACAACGCCCGCCATGTGGTGAGCTATGGCACCGAGGCCGGTCACTATCAGGTTGCGGGCTA CTCCGCAGTGGTCTGCGGCCCCGGTGACATCGCACAAGCGCATCAGGCGGATGAGTTTATCACCGTTGCGCAATTTGAGG CCGGTACAAAGTTCATGCAAGATCTGCTTTCGCGTCTCTCTGCATAG
Upstream 100 bases:
>100_bases ATCGCCGATCCACGACATGAACTATCAGGCAGAGCCCTCGCAATACATGGAAGTGGAGCCGGGGCACTTTGTGCTGACCA CCGATTCTGGCTATTGATCC
Downstream 100 bases:
>100_bases GGCTCCCTGATACCGCGCATGTCCCGCAGGCCTCGATCCGCGTGGCGCATGCCGCGCGCTTTCGATTGTCGTGCGCTACC GTTCGCCCGTTGCGCAGGCA
Product: acetylornithine deacetylase
Products: NA
Alternate protein names: AO; Acetylornithinase; N-acetylornithinase; NAO [H]
Number of amino acids: Translated: 388; Mature: 388
Protein sequence:
>388_residues MIQRLSPLEIMIRLVSFPTVSSETNLPLIEWTSEYLSAHGIEHHVWIDPEQPEKAGLYAHVGPKVEGGVVLSGHTDVVPV EGQDWSSDPFEVVERDGKYFGRGCADMKGFDALALWALVEGNYTDLQRPLQLAFTFDEEIGCTGAPPLIEEMQKYLPKAE AVIVGEPSMLKAVTGHKGAFAMATHVRGFEVHSSLMHEGVSAVMEAARIVDWANHRNAENRARPQTEVAAMFTPPWTTVH VGKISGGTAHNITAGDCNFWMDFRVVPGESLADWQAAYEAEIARIEAEMQRVRPEAGITLEKVFSVPGLAPETDGAAETL VRALTGDNARHVVSYGTEAGHYQVAGYSAVVCGPGDIAQAHQADEFITVAQFEAGTKFMQDLLSRLSA
Sequences:
>Translated_388_residues MIQRLSPLEIMIRLVSFPTVSSETNLPLIEWTSEYLSAHGIEHHVWIDPEQPEKAGLYAHVGPKVEGGVVLSGHTDVVPV EGQDWSSDPFEVVERDGKYFGRGCADMKGFDALALWALVEGNYTDLQRPLQLAFTFDEEIGCTGAPPLIEEMQKYLPKAE AVIVGEPSMLKAVTGHKGAFAMATHVRGFEVHSSLMHEGVSAVMEAARIVDWANHRNAENRARPQTEVAAMFTPPWTTVH VGKISGGTAHNITAGDCNFWMDFRVVPGESLADWQAAYEAEIARIEAEMQRVRPEAGITLEKVFSVPGLAPETDGAAETL VRALTGDNARHVVSYGTEAGHYQVAGYSAVVCGPGDIAQAHQADEFITVAQFEAGTKFMQDLLSRLSA >Mature_388_residues MIQRLSPLEIMIRLVSFPTVSSETNLPLIEWTSEYLSAHGIEHHVWIDPEQPEKAGLYAHVGPKVEGGVVLSGHTDVVPV EGQDWSSDPFEVVERDGKYFGRGCADMKGFDALALWALVEGNYTDLQRPLQLAFTFDEEIGCTGAPPLIEEMQKYLPKAE AVIVGEPSMLKAVTGHKGAFAMATHVRGFEVHSSLMHEGVSAVMEAARIVDWANHRNAENRARPQTEVAAMFTPPWTTVH VGKISGGTAHNITAGDCNFWMDFRVVPGESLADWQAAYEAEIARIEAEMQRVRPEAGITLEKVFSVPGLAPETDGAAETL VRALTGDNARHVVSYGTEAGHYQVAGYSAVVCGPGDIAQAHQADEFITVAQFEAGTKFMQDLLSRLSA
Specific function: Displays A Broad Specificity And Can Also Deacylate Substrates Such As Acetylarginine, Acetylhistidine Or Acetylglutamate Semialdehyde. [C]
COG id: COG0624
COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M20A family. ArgE subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790395, Length=385, Percent_Identity=30.9090909090909, Blast_Score=160, Evalue=1e-40, Organism=Escherichia coli, GI1788816, Length=340, Percent_Identity=24.7058823529412, Blast_Score=66, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010169 - InterPro: IPR001261 - InterPro: IPR002933 - InterPro: IPR011650 [H]
Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]
EC number: =3.5.1.16 [H]
Molecular weight: Translated: 42240; Mature: 42240
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIQRLSPLEIMIRLVSFPTVSSETNLPLIEWTSEYLSAHGIEHHVWIDPEQPEKAGLYAH CCCCCCHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHCCCCEEEEECCCCCHHCCEEEE VGPKVEGGVVLSGHTDVVPVEGQDWSSDPFEVVERDGKYFGRGCADMKGFDALALWALVE ECCCCCCCEEEECCCCEEECCCCCCCCCHHHHHHCCCCHHCCCCCCCCCCCCEEEEEEEC GNYTDLQRPLQLAFTFDEEIGCTGAPPLIEEMQKYLPKAEAVIVGEPSMLKAVTGHKGAF CCHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEECCCHHHHHHCCCCCCE AMATHVRGFEVHSSLMHEGVSAVMEAARIVDWANHRNAENRARPQTEVAAMFTPPWTTVH EEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEE VGKISGGTAHNITAGDCNFWMDFRVVPGESLADWQAAYEAEIARIEAEMQRVRPEAGITL EEECCCCCCCCEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH EKVFSVPGLAPETDGAAETLVRALTGDNARHVVSYGTEAGHYQVAGYSAVVCGPGDIAQA HHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCEEECCEEEEEECCCCHHHH HQADEFITVAQFEAGTKFMQDLLSRLSA HCCCCEEEEEEHHHHHHHHHHHHHHHCC >Mature Secondary Structure MIQRLSPLEIMIRLVSFPTVSSETNLPLIEWTSEYLSAHGIEHHVWIDPEQPEKAGLYAH CCCCCCHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHCCCCEEEEECCCCCHHCCEEEE VGPKVEGGVVLSGHTDVVPVEGQDWSSDPFEVVERDGKYFGRGCADMKGFDALALWALVE ECCCCCCCEEEECCCCEEECCCCCCCCCHHHHHHCCCCHHCCCCCCCCCCCCEEEEEEEC GNYTDLQRPLQLAFTFDEEIGCTGAPPLIEEMQKYLPKAEAVIVGEPSMLKAVTGHKGAF CCHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEECCCHHHHHHCCCCCCE AMATHVRGFEVHSSLMHEGVSAVMEAARIVDWANHRNAENRARPQTEVAAMFTPPWTTVH EEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEE VGKISGGTAHNITAGDCNFWMDFRVVPGESLADWQAAYEAEIARIEAEMQRVRPEAGITL EEECCCCCCCCEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH EKVFSVPGLAPETDGAAETLVRALTGDNARHVVSYGTEAGHYQVAGYSAVVCGPGDIAQA HHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCEEECCEEEEEECCCCHHHH HQADEFITVAQFEAGTKFMQDLLSRLSA HCCCCEEEEEEHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9829957 [H]