Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080553

Identifier: 99080553

GI number: 99080553

Start: 766372

End: 767652

Strand: Direct

Name: 99080553

Synonym: TM1040_0712

Alternate gene names: NA

Gene position: 766372-767652 (Clockwise)

Preceding gene: 99080550

Following gene: 99080557

Centisome position: 23.94

GC content: 61.75

Gene sequence:

>1281_bases
ATGGCCGCGATAGAAGATCACCCCCTGCGCTATCAGCTCGCCAACGAGCTGCACGCGCGCCCGTTTCCCACCATTTCCGT
GCCCGGCACGGTGGCCTATCTTGCGGTGAAACAACCCAGCGAGGCGGTGCATCGCGACCGCATGGCGGATCTGCAGCATC
TGAAGGATCTGCTGGACCGTCACGGCGCAGCTCATCCGCAACCAGGTGCCACCCATCACACGGCCCAGCTCGGACGTTAC
ACGTTGAAATGGGAGCAACACACGGAGTTTGTTTCTTATACGCTTTATGGTGATGGGGTGAGTGATCGCGCCTTTGATCC
GCAGGATTTTGATCTGTTTCCATCGGATTGGCTGGCCAAGGCACCGGGACAGCGGATCACTTCAGCTTTGATTCGCGTGG
TTGCGCGTCCTGATGCGGAGCAGATCAAAGCGCGGGTGCGGGACTGGTTTGTCCCTGAAAGCCTCGCGATGGCGTCGGTG
CTGGATGACAATGCGGTGGTGGCAGGGGACTTTCGTATCGACCCTGCCGGGCATGTCCGCTTTGCCCTGTTCGTGAACGA
GGAAACCGGCCCGCAGCGGGTCGGTCGTGTGGTGCAGCGGCTTTGCGAGATCGAGACCTATCGGGCGATGTCCATGCTGG
GGTTTTCGCGGGCCCGTGGCCTGACGCCGACCATCAGTGCCATGGATGTCTCGCTCTCGGAGATGATGCGGGAAATGACC
CGTGGCGAAGTGCCCGCCGAGCAGACCTTGAGCCAGCTCCTGACCATCTCCGCAGAACTGGAGGCCATGGCGGCGCAATC
GGCCTTTCGTTTTGGGGCGACCGGTGCCTATGCGGCGCTCGTCAATCAACGGATTTCGCTGTTGCGCGAAGAGCGTTTTG
TCGGCTTTCAGACAATGACGGAGTTCATGCTGCGCCGGTTCGAACCCGCCATGCGCACGGTGGAGTCGACAGAGAAACGT
CTCGAGGTGCTGGCTGACCGGGCCCGGCGTGCCGGGGAGCTGTTGCGCACTAGGGTGGATGTCGAGCGCTCCGCGCAGAA
CTCGGCCCTGCTGGAGAGTATGGACCGCCGCGCGGATCTGCAACTGCGGCTGCAGCACACGGTTGAGGGGCTCTCGGTGG
TGGCGATCAGCTACTATGCCGTTTCGCTGGCGGGCTATGCGCTCTATCCTCTGGGCACTATGCTCGGTCTTAGCAAGGGG
ATCCTGACGGCGATCCTGACGCCTTTGGTGATTGGCGCTGTGTTTCTGGCGGTCCGGCGCATTCGAAATAGCCTGCACTG
A

Upstream 100 bases:

>100_bases
GTATACCGTTGCATCCCGCTAACGCATTGATTGGGAAGTAAAACTTTACACAAGGGGGGCGTTTTCGCTACGGTCTGGAA
ACTCTTGTAGGAAGGTTCCT

Downstream 100 bases:

>100_bases
CCGGGCGCGAGGGCCGTAAGCCGAGCAAGTAGTCCAGAAACGCAAAAGGCCGCCTCACCGGGCGGCCTTTCTTTTGGGTG
TAGGGTGCTTCAGCGGCCCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 426; Mature: 425

Protein sequence:

>426_residues
MAAIEDHPLRYQLANELHARPFPTISVPGTVAYLAVKQPSEAVHRDRMADLQHLKDLLDRHGAAHPQPGATHHTAQLGRY
TLKWEQHTEFVSYTLYGDGVSDRAFDPQDFDLFPSDWLAKAPGQRITSALIRVVARPDAEQIKARVRDWFVPESLAMASV
LDDNAVVAGDFRIDPAGHVRFALFVNEETGPQRVGRVVQRLCEIETYRAMSMLGFSRARGLTPTISAMDVSLSEMMREMT
RGEVPAEQTLSQLLTISAELEAMAAQSAFRFGATGAYAALVNQRISLLREERFVGFQTMTEFMLRRFEPAMRTVESTEKR
LEVLADRARRAGELLRTRVDVERSAQNSALLESMDRRADLQLRLQHTVEGLSVVAISYYAVSLAGYALYPLGTMLGLSKG
ILTAILTPLVIGAVFLAVRRIRNSLH

Sequences:

>Translated_426_residues
MAAIEDHPLRYQLANELHARPFPTISVPGTVAYLAVKQPSEAVHRDRMADLQHLKDLLDRHGAAHPQPGATHHTAQLGRY
TLKWEQHTEFVSYTLYGDGVSDRAFDPQDFDLFPSDWLAKAPGQRITSALIRVVARPDAEQIKARVRDWFVPESLAMASV
LDDNAVVAGDFRIDPAGHVRFALFVNEETGPQRVGRVVQRLCEIETYRAMSMLGFSRARGLTPTISAMDVSLSEMMREMT
RGEVPAEQTLSQLLTISAELEAMAAQSAFRFGATGAYAALVNQRISLLREERFVGFQTMTEFMLRRFEPAMRTVESTEKR
LEVLADRARRAGELLRTRVDVERSAQNSALLESMDRRADLQLRLQHTVEGLSVVAISYYAVSLAGYALYPLGTMLGLSKG
ILTAILTPLVIGAVFLAVRRIRNSLH
>Mature_425_residues
AAIEDHPLRYQLANELHARPFPTISVPGTVAYLAVKQPSEAVHRDRMADLQHLKDLLDRHGAAHPQPGATHHTAQLGRYT
LKWEQHTEFVSYTLYGDGVSDRAFDPQDFDLFPSDWLAKAPGQRITSALIRVVARPDAEQIKARVRDWFVPESLAMASVL
DDNAVVAGDFRIDPAGHVRFALFVNEETGPQRVGRVVQRLCEIETYRAMSMLGFSRARGLTPTISAMDVSLSEMMREMTR
GEVPAEQTLSQLLTISAELEAMAAQSAFRFGATGAYAALVNQRISLLREERFVGFQTMTEFMLRRFEPAMRTVESTEKRL
EVLADRARRAGELLRTRVDVERSAQNSALLESMDRRADLQLRLQHTVEGLSVVAISYYAVSLAGYALYPLGTMLGLSKGI
LTAILTPLVIGAVFLAVRRIRNSLH

Specific function: Unknown

COG id: COG4949

COG function: function code S; Uncharacterized membrane-anchored protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47530; Mature: 47399

Theoretical pI: Translated: 7.47; Mature: 7.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAIEDHPLRYQLANELHARPFPTISVPGTVAYLAVKQPSEAVHRDRMADLQHLKDLLDR
CCCCCCCCHHHHHHHHHCCCCCCCEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
HGAAHPQPGATHHTAQLGRYTLKWEQHTEFVSYTLYGDGVSDRAFDPQDFDLFPSDWLAK
CCCCCCCCCCCCHHHHHCCEEEEEHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHC
APGQRITSALIRVVARPDAEQIKARVRDWFVPESLAMASVLDDNAVVAGDFRIDPAGHVR
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEECEEECCCCCEE
FALFVNEETGPQRVGRVVQRLCEIETYRAMSMLGFSRARGLTPTISAMDVSLSEMMREMT
EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
RGEVPAEQTLSQLLTISAELEAMAAQSAFRFGATGAYAALVNQRISLLREERFVGFQTMT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
EFMLRRFEPAMRTVESTEKRLEVLADRARRAGELLRTRVDVERSAQNSALLESMDRRADL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
QLRLQHTVEGLSVVAISYYAVSLAGYALYPLGTMLGLSKGILTAILTPLVIGAVFLAVRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRNSLH
HHHHCC
>Mature Secondary Structure 
AAIEDHPLRYQLANELHARPFPTISVPGTVAYLAVKQPSEAVHRDRMADLQHLKDLLDR
CCCCCCCHHHHHHHHHCCCCCCCEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
HGAAHPQPGATHHTAQLGRYTLKWEQHTEFVSYTLYGDGVSDRAFDPQDFDLFPSDWLAK
CCCCCCCCCCCCHHHHHCCEEEEEHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHC
APGQRITSALIRVVARPDAEQIKARVRDWFVPESLAMASVLDDNAVVAGDFRIDPAGHVR
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEECEEECCCCCEE
FALFVNEETGPQRVGRVVQRLCEIETYRAMSMLGFSRARGLTPTISAMDVSLSEMMREMT
EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
RGEVPAEQTLSQLLTISAELEAMAAQSAFRFGATGAYAALVNQRISLLREERFVGFQTMT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
EFMLRRFEPAMRTVESTEKRLEVLADRARRAGELLRTRVDVERSAQNSALLESMDRRADL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
QLRLQHTVEGLSVVAISYYAVSLAGYALYPLGTMLGLSKGILTAILTPLVIGAVFLAVRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRNSLH
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA