Click here to switch to the map view.

The map label for this gene is yadH [H]

Identifier: 99080504

GI number: 99080504

Start: 708878

End: 709702

Strand: Direct

Name: yadH [H]

Synonym: TM1040_0663

Alternate gene names: 99080504

Gene position: 708878-709702 (Clockwise)

Preceding gene: 99080502

Following gene: 99080506

Centisome position: 22.15

GC content: 59.39

Gene sequence:

>825_bases
ATGTCAGACAACAACGCACAGTCGAGCTTTCGGATCGAAGTGGGAGAACGCCGCTTTGGCAGAGTGAATTGGCTGGGTCT
TCAGACGCTTGCCGGGCGCGAGATCAAACGCTTTATGGTGGTCTATACCCAGACCTTGCTGGCGCCGATGGTGACGGCGG
CGCTGTTCCTGTTGATCTTCTCGATCGCAATTGGCCCACGACGCGGCGATGTCATGGGCGTGCCTTTCATTTCCTTTATC
GCACCGGGCATCATGATGATGACCGTGATCCAGAACGCCTTTGCCAACACGTCCTCGTCGCTGGTGATCTCCAAAGTGCA
GGGCAACATCGTCGACACGCTGATGCCACCGCTTTCCGGTTTCGAGATCCTCCTTGGGTATCTTGCGGGGGCGATCACAC
GCGGGCTGTTCGTCTCTGTCGGGATTGGTCTCGGGCTGGCTCTGGTGCTGGGCATGGTGCCGGCGCATCCGCTCGTGGCG
CTGGGCTTTGTGGTTCTGGGGGCAGCGTTTCTCGGGGGGCTTGGCATCGTCGCTGGCGTATTTGCCGACAAATTCGACCA
GATGGCGGCCATCACCAATTTTGTGGTGACGCCATTGGCGTTTCTGTCCGGCACGTTCTACTCAGTCGAAGCCCTACCAC
CGGTGCTCTACGCGATCTCCCATGTGAACCCGGTTTTCTACCTGATCGACGGGGTGCGATATGGCATGATCGGCGTCTCC
GACAGCGACCCGGCCTTTGGCGCGCTAGTGTGCCTTGGGGCGACGGCTGTCATATTGCTGCTGGCCTGGCAGATGCTTCG
GACAGGCTACCGGCTGAAGAACTAG

Upstream 100 bases:

>100_bases
CGAGATACAAGTCATGAACCGACGTCTCGGCCGACAGAAGCGCGGCTTGCATCCGCGTGATGAGACTTTATGCAAGGGGC
AGCACGAAGATGAGGGTGGC

Downstream 100 bases:

>100_bases
AGCACGGTGTCGCTGCGGGGCAGGGGCTCTGTCACCAGGGGACGCTTGCCGTTGACGCTCTCGCGCCAGGCAAGCAACCC
CGCTCCAGAGAGGATGATGC

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MSDNNAQSSFRIEVGERRFGRVNWLGLQTLAGREIKRFMVVYTQTLLAPMVTAALFLLIFSIAIGPRRGDVMGVPFISFI
APGIMMMTVIQNAFANTSSSLVISKVQGNIVDTLMPPLSGFEILLGYLAGAITRGLFVSVGIGLGLALVLGMVPAHPLVA
LGFVVLGAAFLGGLGIVAGVFADKFDQMAAITNFVVTPLAFLSGTFYSVEALPPVLYAISHVNPVFYLIDGVRYGMIGVS
DSDPAFGALVCLGATAVILLLAWQMLRTGYRLKN

Sequences:

>Translated_274_residues
MSDNNAQSSFRIEVGERRFGRVNWLGLQTLAGREIKRFMVVYTQTLLAPMVTAALFLLIFSIAIGPRRGDVMGVPFISFI
APGIMMMTVIQNAFANTSSSLVISKVQGNIVDTLMPPLSGFEILLGYLAGAITRGLFVSVGIGLGLALVLGMVPAHPLVA
LGFVVLGAAFLGGLGIVAGVFADKFDQMAAITNFVVTPLAFLSGTFYSVEALPPVLYAISHVNPVFYLIDGVRYGMIGVS
DSDPAFGALVCLGATAVILLLAWQMLRTGYRLKN
>Mature_273_residues
SDNNAQSSFRIEVGERRFGRVNWLGLQTLAGREIKRFMVVYTQTLLAPMVTAALFLLIFSIAIGPRRGDVMGVPFISFIA
PGIMMMTVIQNAFANTSSSLVISKVQGNIVDTLMPPLSGFEILLGYLAGAITRGLFVSVGIGLGLALVLGMVPAHPLVAL
GFVVLGAAFLGGLGIVAGVFADKFDQMAAITNFVVTPLAFLSGTFYSVEALPPVLYAISHVNPVFYLIDGVRYGMIGVSD
SDPAFGALVCLGATAVILLLAWQMLRTGYRLKN

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1786320, Length=257, Percent_Identity=38.5214007782101, Blast_Score=178, Evalue=3e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 29141; Mature: 29010

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDNNAQSSFRIEVGERRFGRVNWLGLQTLAGREIKRFMVVYTQTLLAPMVTAALFLLIF
CCCCCCCCEEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIAIGPRRGDVMGVPFISFIAPGIMMMTVIQNAFANTSSSLVISKVQGNIVDTLMPPLSG
HHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHCCCHHHHHCCCCHH
FEILLGYLAGAITRGLFVSVGIGLGLALVLGMVPAHPLVALGFVVLGAAFLGGLGIVAGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FADKFDQMAAITNFVVTPLAFLSGTFYSVEALPPVLYAISHVNPVFYLIDGVRYGMIGVS
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCEEECC
DSDPAFGALVCLGATAVILLLAWQMLRTGYRLKN
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SDNNAQSSFRIEVGERRFGRVNWLGLQTLAGREIKRFMVVYTQTLLAPMVTAALFLLIF
CCCCCCCEEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIAIGPRRGDVMGVPFISFIAPGIMMMTVIQNAFANTSSSLVISKVQGNIVDTLMPPLSG
HHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHCCCHHHHHCCCCHH
FEILLGYLAGAITRGLFVSVGIGLGLALVLGMVPAHPLVALGFVVLGAAFLGGLGIVAGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FADKFDQMAAITNFVVTPLAFLSGTFYSVEALPPVLYAISHVNPVFYLIDGVRYGMIGVS
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCEEECC
DSDPAFGALVCLGATAVILLLAWQMLRTGYRLKN
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]