| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080491
Identifier: 99080491
GI number: 99080491
Start: 694800
End: 696089
Strand: Direct
Name: 99080491
Synonym: TM1040_0650
Alternate gene names: NA
Gene position: 694800-696089 (Clockwise)
Preceding gene: 99080487
Following gene: 99080492
Centisome position: 21.71
GC content: 55.97
Gene sequence:
>1290_bases ATGACCGATGCGCCCGAGATCCCAGAGGGCCTGCGCCCCGCCAATGAAAACCCCTGGTACATCCTGATGACGCTCTATGG CGAGCAGGAGGGAGAGGAGATTGATGTCGAATTGCACAAGAAGAACCGCCGCGCGTGGAATGCTTGGGTCGGGCAAGCGC TGAGCGCGGAGGAGCGAGTTGCGGCGGCGAAAAGCTCGCAAATCAAGGTAACGGAGCTGGAGGCTTGGGATGAACTTGGA GAGAAGATCAAAGCACGTTTTTTTGAGGAGAGCAATCGTCGCAATGTCGATACTGAGGGGATGCTGGTATTTCCCGAACC CGCGAAGCCAATATGGATGGGAAACACCGTATTCTCCGAGAATCTTGTATTTGAGAATATGGTGATTGCATCAAAGGTGA ATTTTGGTTCAGCCAATTTCATGCGAAATGCACGGTTTGGTTTTGTAACCTTTGCTGGCGTTGCTGTGTTTGGGTCAGCC AAGTTCGAGCAGGAGGCTTGGTTCCACTTTGCGAATTTTCAAAAAGCAGCCTTGTTTGGTAGAGCCAGGTTCAAGGATTT TGTCTACTTTTTTCGCGCGCGTTTTGGCGGGTGCTCTGGCGTACGGTGCCTTCCAAGCTTCGCCTACTGTCAATTTGAAA GGCCGACGATCTTCTCTCGTGCGCTTTTCTGTGATGGCTATCCCGATTTCTCGGGCGCGGTGCTGCATGACAAGACCAGC TTTACCGCGCGAATGGACCCGACCTCGGATGAAGTTGCCCAAGACAAAGACCTCGAGGGGCGGACCTTCTGGCCCCAGAG AACCAAACAGGATCCGGTTAGTGCGCGTGAAAGCTGTGCCACCATACGGCATTTGCTGACCCAACAAGGGCTACCGGAAG AGGCGCATTTCTTCTTTCGCCGGGAAATGCGCTTTGCCAGCCAGATAGGCTCATTCTGGCAGCGGCTGCCTTATCGGTCG TTTGGCTGGCTGTCTGACTTTGGGTATTCGATCCAGCGGCCCCTGTGGTGGCTGGCGGGGATCTGCTTTCTCGGGATGGC GGCGTTTTGGACGGTGTTCTCCTTTCCCGGTGGCCCCCCGGTCCTTTCAGAGAGCGATCTTGGCACGGCGGCAGCGCTGA GCTTTTCCAATCTCTTTCCGCTCTTTGGCTTTGGCCGGGTGTTTCTGAGCGAGGTGCTCGCGAGTTTGCCACGCTGGGCG CAGGTGCTGTCCGGGGCGCAGACCGTGTTGTCGCTGCCGCTGTTGTTTTTCCTCGGTCTGGCGCTGCGGCAACGGTTTCG ATTGCGCTGA
Upstream 100 bases:
>100_bases AGCGGTTTTTGGCCGCGGCGTTGCGCAAAACACCCTTGGCCCGTGCCCCGCGTGCTGGTTAGGCTGGCTGCACTGCGATT TTGATGACGAAAGCCGATTG
Downstream 100 bases:
>100_bases GGGCGCGCTGGGCGGCTGCGGTGGATTGATCCCGCGCGCGAGCGGTGTAATCTGCGCTAAAGCCCTGATGTCACGGGCGA AGATTTCCGCATTCCCAGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 429; Mature: 428
Protein sequence:
>429_residues MTDAPEIPEGLRPANENPWYILMTLYGEQEGEEIDVELHKKNRRAWNAWVGQALSAEERVAAAKSSQIKVTELEAWDELG EKIKARFFEESNRRNVDTEGMLVFPEPAKPIWMGNTVFSENLVFENMVIASKVNFGSANFMRNARFGFVTFAGVAVFGSA KFEQEAWFHFANFQKAALFGRARFKDFVYFFRARFGGCSGVRCLPSFAYCQFERPTIFSRALFCDGYPDFSGAVLHDKTS FTARMDPTSDEVAQDKDLEGRTFWPQRTKQDPVSARESCATIRHLLTQQGLPEEAHFFFRREMRFASQIGSFWQRLPYRS FGWLSDFGYSIQRPLWWLAGICFLGMAAFWTVFSFPGGPPVLSESDLGTAAALSFSNLFPLFGFGRVFLSEVLASLPRWA QVLSGAQTVLSLPLLFFLGLALRQRFRLR
Sequences:
>Translated_429_residues MTDAPEIPEGLRPANENPWYILMTLYGEQEGEEIDVELHKKNRRAWNAWVGQALSAEERVAAAKSSQIKVTELEAWDELG EKIKARFFEESNRRNVDTEGMLVFPEPAKPIWMGNTVFSENLVFENMVIASKVNFGSANFMRNARFGFVTFAGVAVFGSA KFEQEAWFHFANFQKAALFGRARFKDFVYFFRARFGGCSGVRCLPSFAYCQFERPTIFSRALFCDGYPDFSGAVLHDKTS FTARMDPTSDEVAQDKDLEGRTFWPQRTKQDPVSARESCATIRHLLTQQGLPEEAHFFFRREMRFASQIGSFWQRLPYRS FGWLSDFGYSIQRPLWWLAGICFLGMAAFWTVFSFPGGPPVLSESDLGTAAALSFSNLFPLFGFGRVFLSEVLASLPRWA QVLSGAQTVLSLPLLFFLGLALRQRFRLR >Mature_428_residues TDAPEIPEGLRPANENPWYILMTLYGEQEGEEIDVELHKKNRRAWNAWVGQALSAEERVAAAKSSQIKVTELEAWDELGE KIKARFFEESNRRNVDTEGMLVFPEPAKPIWMGNTVFSENLVFENMVIASKVNFGSANFMRNARFGFVTFAGVAVFGSAK FEQEAWFHFANFQKAALFGRARFKDFVYFFRARFGGCSGVRCLPSFAYCQFERPTIFSRALFCDGYPDFSGAVLHDKTSF TARMDPTSDEVAQDKDLEGRTFWPQRTKQDPVSARESCATIRHLLTQQGLPEEAHFFFRREMRFASQIGSFWQRLPYRSF GWLSDFGYSIQRPLWWLAGICFLGMAAFWTVFSFPGGPPVLSESDLGTAAALSFSNLFPLFGFGRVFLSEVLASLPRWAQ VLSGAQTVLSLPLLFFLGLALRQRFRLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48880; Mature: 48749
Theoretical pI: Translated: 7.82; Mature: 7.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDAPEIPEGLRPANENPWYILMTLYGEQEGEEIDVELHKKNRRAWNAWVGQALSAEERV CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHCHHHHH AAAKSSQIKVTELEAWDELGEKIKARFFEESNRRNVDTEGMLVFPEPAKPIWMGNTVFSE HHHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCEEECCCHHCC NLVFENMVIASKVNFGSANFMRNARFGFVTFAGVAVFGSAKFEQEAWFHFANFQKAALFG CHHHHHEEEEEECCCCCHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH RARFKDFVYFFRARFGGCSGVRCLPSFAYCQFERPTIFSRALFCDGYPDFSGAVLHDKTS HHHHHHHHHHHHHHHCCCCCCHHCCCHHHEEECCCHHHHHHHEECCCCCCCCCEEECCCC FTARMDPTSDEVAQDKDLEGRTFWPQRTKQDPVSARESCATIRHLLTQQGLPEEAHFFFR CEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH REMRFASQIGSFWQRLPYRSFGWLSDFGYSIQRPLWWLAGICFLGMAAFWTVFSFPGGPP HHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC VLSESDLGTAAALSFSNLFPLFGFGRVFLSEVLASLPRWAQVLSGAQTVLSLPLLFFLGL CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALRQRFRLR HHHHHHCCC >Mature Secondary Structure TDAPEIPEGLRPANENPWYILMTLYGEQEGEEIDVELHKKNRRAWNAWVGQALSAEERV CCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHCHHHHH AAAKSSQIKVTELEAWDELGEKIKARFFEESNRRNVDTEGMLVFPEPAKPIWMGNTVFSE HHHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCEEECCCHHCC NLVFENMVIASKVNFGSANFMRNARFGFVTFAGVAVFGSAKFEQEAWFHFANFQKAALFG CHHHHHEEEEEECCCCCHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH RARFKDFVYFFRARFGGCSGVRCLPSFAYCQFERPTIFSRALFCDGYPDFSGAVLHDKTS HHHHHHHHHHHHHHHCCCCCCHHCCCHHHEEECCCHHHHHHHEECCCCCCCCCEEECCCC FTARMDPTSDEVAQDKDLEGRTFWPQRTKQDPVSARESCATIRHLLTQQGLPEEAHFFFR CEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH REMRFASQIGSFWQRLPYRSFGWLSDFGYSIQRPLWWLAGICFLGMAAFWTVFSFPGGPP HHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC VLSESDLGTAAALSFSNLFPLFGFGRVFLSEVLASLPRWAQVLSGAQTVLSLPLLFFLGL CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALRQRFRLR HHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA