Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080457

Identifier: 99080457

GI number: 99080457

Start: 656123

End: 656890

Strand: Reverse

Name: 99080457

Synonym: TM1040_0616

Alternate gene names: NA

Gene position: 656890-656123 (Counterclockwise)

Preceding gene: 99080459

Following gene: 99080455

Centisome position: 20.52

GC content: 59.9

Gene sequence:

>768_bases
TTGACCATACCTCAGTCATTGGAGCGCGCTGCCGCCAATCTTGCGAAGACCAAGCCGCTGGTGCGGCACCAGAAAGCCCT
TCCGGATGGGTCAAAGCCGCAGTTGCGCCGCTATGAGGTGGCCAGTCTCTTGCCCAATGGCAACCCGACCGAGACCCGCC
ACATTGCGCCGGCCCTGCCCCTGTTTGAACAAGCCTTCACGGCATTCACGCGCGGCTCGCTCATCGAGACCGACTATGGC
CCGGTTGCAATCGAAGATCTTTATCCCGGTGACCGGGTACTCACCCGCGATGGCAGCTATCAGACACTGATCTGGAAAGG
CATGACGACGATGGTGCCTGGCCATCAGGCTGCAACCGGTGGTCCCTTGTCGATGACCAGTTTCATGGCCGATAGTTTTG
GGATGGAAAAGCCGATGTCCTGCGTGGTGACCGGCCCGGCAGCGCGCCTGCTGCGCACGCCCATGCATCTGCGCCATGCG
GAGGGCGACAGCCCGCTCTTGACCCCGGTCACGGAATTCATCGATGGCATGAACATCGTCGAGACAACGCCCCCAACGCC
GATCGACATGTATCACCTCTGCCTTGCCAAACATGCGGTGATCAAAGTGGGCGGCCTGGAGTTTGAGACCTATCATCCAG
GCCCAGAGGCGCTTCGACTGGTGAGCTATCCGATCAAGACGCTGTTCTTGAACATGTTTCCACATGCCGACAAGATTTCG
GATTTTGGCCCGCTCGCCTTTGATCGCGCGCGCACCACGCAAGCCTGA

Upstream 100 bases:

>100_bases
TGCGCGGATTGAGAGCAAGCGGACGCTCGGGCCACAACAGTATGCGCGCAGACGCCGGTGGGGGCCGGAGGCTGCGCCAA
AGGGAAAGAGGACCTGGATT

Downstream 100 bases:

>100_bases
CTGAGGTCTTGAGCGCGGGTTCCGCCGTGCTCAGGCTTCGCGCGCGAGCCGCTCTTCAAGCACGTCAAAGGGCACGCCTG
GCTCATCCTTGGCACCCCGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MTIPQSLERAAANLAKTKPLVRHQKALPDGSKPQLRRYEVASLLPNGNPTETRHIAPALPLFEQAFTAFTRGSLIETDYG
PVAIEDLYPGDRVLTRDGSYQTLIWKGMTTMVPGHQAATGGPLSMTSFMADSFGMEKPMSCVVTGPAARLLRTPMHLRHA
EGDSPLLTPVTEFIDGMNIVETTPPTPIDMYHLCLAKHAVIKVGGLEFETYHPGPEALRLVSYPIKTLFLNMFPHADKIS
DFGPLAFDRARTTQA

Sequences:

>Translated_255_residues
MTIPQSLERAAANLAKTKPLVRHQKALPDGSKPQLRRYEVASLLPNGNPTETRHIAPALPLFEQAFTAFTRGSLIETDYG
PVAIEDLYPGDRVLTRDGSYQTLIWKGMTTMVPGHQAATGGPLSMTSFMADSFGMEKPMSCVVTGPAARLLRTPMHLRHA
EGDSPLLTPVTEFIDGMNIVETTPPTPIDMYHLCLAKHAVIKVGGLEFETYHPGPEALRLVSYPIKTLFLNMFPHADKIS
DFGPLAFDRARTTQA
>Mature_254_residues
TIPQSLERAAANLAKTKPLVRHQKALPDGSKPQLRRYEVASLLPNGNPTETRHIAPALPLFEQAFTAFTRGSLIETDYGP
VAIEDLYPGDRVLTRDGSYQTLIWKGMTTMVPGHQAATGGPLSMTSFMADSFGMEKPMSCVVTGPAARLLRTPMHLRHAE
GDSPLLTPVTEFIDGMNIVETTPPTPIDMYHLCLAKHAVIKVGGLEFETYHPGPEALRLVSYPIKTLFLNMFPHADKISD
FGPLAFDRARTTQA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27967; Mature: 27835

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIPQSLERAAANLAKTKPLVRHQKALPDGSKPQLRRYEVASLLPNGNPTETRHIAPALP
CCCHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHH
LFEQAFTAFTRGSLIETDYGPVAIEDLYPGDRVLTRDGSYQTLIWKGMTTMVPGHQAATG
HHHHHHHHHHCCCEEECCCCCEEEECCCCCCEEEECCCCEEEEEECCCHHCCCCCCCCCC
GPLSMTSFMADSFGMEKPMSCVVTGPAARLLRTPMHLRHAEGDSPLLTPVTEFIDGMNIV
CCHHHHHHHHHHCCCCCCCEEEEECHHHHHHHCCHHHHHCCCCCCCHHHHHHHHCCCCEE
ETTPPTPIDMYHLCLAKHAVIKVGGLEFETYHPGPEALRLVSYPIKTLFLNMFPHADKIS
ECCCCCCHHHHHHHHHHHHHEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHCC
DFGPLAFDRARTTQA
CCCCCHHCCHHCCCC
>Mature Secondary Structure 
TIPQSLERAAANLAKTKPLVRHQKALPDGSKPQLRRYEVASLLPNGNPTETRHIAPALP
CCHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHH
LFEQAFTAFTRGSLIETDYGPVAIEDLYPGDRVLTRDGSYQTLIWKGMTTMVPGHQAATG
HHHHHHHHHHCCCEEECCCCCEEEECCCCCCEEEECCCCEEEEEECCCHHCCCCCCCCCC
GPLSMTSFMADSFGMEKPMSCVVTGPAARLLRTPMHLRHAEGDSPLLTPVTEFIDGMNIV
CCHHHHHHHHHHCCCCCCCEEEEECHHHHHHHCCHHHHHCCCCCCCHHHHHHHHCCCCEE
ETTPPTPIDMYHLCLAKHAVIKVGGLEFETYHPGPEALRLVSYPIKTLFLNMFPHADKIS
ECCCCCCHHHHHHHHHHHHHEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHCC
DFGPLAFDRARTTQA
CCCCCHHCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA