Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is 99080452

Identifier: 99080452

GI number: 99080452

Start: 650146

End: 650370

Strand: Direct

Name: 99080452

Synonym: TM1040_0611

Alternate gene names: NA

Gene position: 650146-650370 (Clockwise)

Preceding gene: 99080447

Following gene: 99080456

Centisome position: 20.31

GC content: 56.44

Gene sequence:

>225_bases
ATGAACAAGCGGTCTGATCTGGCCATGGCCAACGAAGATGTCCTCCGTGTCGAGTTGGAGGTGTTTCGCAGAGAGCATCG
CGACCTCGATGAAGCGATTGAGGCTCTGGAGGAAAAAGGCACTGCGGATGCGCTGACGATCCGGCGTCTGAAAAAGCAGA
AACTGGTGCTCAAGGACAAGATCGCGCTGATCGAGGATCGGCTGCTCCCCGACATCATCGCCTGA

Upstream 100 bases:

>100_bases
AAGTCCCGGGTTCACCTTTGTGCCGACAGTCGCCCCTAGCGCTGCGATCCAAGGGAGCATAATATGGCGAATGTTTCACT
GTCCTTAACAAGAGTCGCAA

Downstream 100 bases:

>100_bases
GGGCGCGACATCCCGGTGATACCGGCCAGTCGCTCGGCGGTTGGCGGCGGTCCTGATTATACTTGGGAGCCCCGAACTCG
ACGTCACAGCCCGCATGTTC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 74; Mature: 74

Protein sequence:

>74_residues
MNKRSDLAMANEDVLRVELEVFRREHRDLDEAIEALEEKGTADALTIRRLKKQKLVLKDKIALIEDRLLPDIIA

Sequences:

>Translated_74_residues
MNKRSDLAMANEDVLRVELEVFRREHRDLDEAIEALEEKGTADALTIRRLKKQKLVLKDKIALIEDRLLPDIIA
>Mature_74_residues
MNKRSDLAMANEDVLRVELEVFRREHRDLDEAIEALEEKGTADALTIRRLKKQKLVLKDKIALIEDRLLPDIIA

Specific function: Unknown

COG id: COG5481

COG function: function code S; Uncharacterized conserved small protein containing a coiled-coil domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8596; Mature: 8596

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKRSDLAMANEDVLRVELEVFRREHRDLDEAIEALEEKGTADALTIRRLKKQKLVLKDK
CCCCCCCHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
IALIEDRLLPDIIA
HHHHHHHHHHHHCC
>Mature Secondary Structure
MNKRSDLAMANEDVLRVELEVFRREHRDLDEAIEALEEKGTADALTIRRLKKQKLVLKDK
CCCCCCCHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
IALIEDRLLPDIIA
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA