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The map label for this gene is yddE [C]

Identifier: 99080446

GI number: 99080446

Start: 645532

End: 646422

Strand: Direct

Name: yddE [C]

Synonym: TM1040_0605

Alternate gene names: 99080446

Gene position: 645532-646422 (Clockwise)

Preceding gene: 99080443

Following gene: 99080447

Centisome position: 20.17

GC content: 61.95

Gene sequence:

>891_bases
ATGCAGGATTTCCAGTTTGATTGGGTGGACGCTTTTACGGATCGTCCCTTTGGCGGCAATGGTTGTGCAGTGGTCCATGG
GGGCGCGCATCTGCCCGAGGCGGTGGCCTGCGCCTATGTGCGCGAAACCTCGCTGGTAGAATGCACCTTCACCGGCCCGT
CTGAGGTCGCGGACATCAAGGTGCGCTATTTCCTCGCCAGCCGAGAGATCCCCTTTGCCGGTCACCCAACCATCGCGACG
GTCGCCGCCATGCGGGATCGCGGGCTGATCTCGGGCCAGCGCATCACGCTCGAGACAGGTGCGGGCATCGTTCCAGTCGA
TCTCGAAGACGATCTCATCGTAATGCAGCAGGTCGCGCCCCAGTTCGGCGTGACCCCGGATCGAGCACTTGTTGCTGCAG
CGATCAGCCTGCCGGAAACAGCAATCCTCGGTCAGCCGCAGCTCGTGTCTACGGGGCTGCCGTTTTGTATTACCGTGCTG
AAAGATCTCGACAGTCTGCGTGCTGCGCGCCTCGACGCGGTCGCGATGGAGCCACTTGGGCGCGCCCTTGGTGCCGATGG
CAGCGATGTAATGGAGCCTTTCCTCGTGACGCTTGATGGGTTCACCCCAACAGGCGATACGTTTTCGCGACTGCTCATGC
TGCCGCCAAGCCCGCCGGAGGATCCGTTTACGGGCTCTGCAACGGGCGCTATGGCGGCTTATCTTTGGCATCATGGCTTG
ATGGACAAAGCCGTGTTTGTAGCAGAGCAGGGACACCTGATGGATCGCCCGGGCGAAGCTCATGTCGCCCTCGTCGGGGA
CCGGTCAGCCCCGAAGGGCATTCGCGTCGGGGGGCGCGGTTTTGTTTTGATGCGTGGAGAGGTCGGCCTGCCAACGAGTT
TACAGACCTGA

Upstream 100 bases:

>100_bases
CTCTTTGGGACATCGAATTGTATCAGCACAGCGCGCGCGGCTTGAGCTTGATACGGATCAATGGTTGCCTGCAGCCCATC
ATCTTCTGAGGGCGCGACTG

Downstream 100 bases:

>100_bases
CCCCGCGCAGTTTTCAGAGCCCCCAGGCGCCGCGCAGGCCGCTGGGCTTCGGGCGTCTTTACAGCTAGTGCTGGGCTCAT
GTTCATGATATGTTCCTATC

Product: phenazine biosynthesis PhzC/PhzF protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MQDFQFDWVDAFTDRPFGGNGCAVVHGGAHLPEAVACAYVRETSLVECTFTGPSEVADIKVRYFLASREIPFAGHPTIAT
VAAMRDRGLISGQRITLETGAGIVPVDLEDDLIVMQQVAPQFGVTPDRALVAAAISLPETAILGQPQLVSTGLPFCITVL
KDLDSLRAARLDAVAMEPLGRALGADGSDVMEPFLVTLDGFTPTGDTFSRLLMLPPSPPEDPFTGSATGAMAAYLWHHGL
MDKAVFVAEQGHLMDRPGEAHVALVGDRSAPKGIRVGGRGFVLMRGEVGLPTSLQT

Sequences:

>Translated_296_residues
MQDFQFDWVDAFTDRPFGGNGCAVVHGGAHLPEAVACAYVRETSLVECTFTGPSEVADIKVRYFLASREIPFAGHPTIAT
VAAMRDRGLISGQRITLETGAGIVPVDLEDDLIVMQQVAPQFGVTPDRALVAAAISLPETAILGQPQLVSTGLPFCITVL
KDLDSLRAARLDAVAMEPLGRALGADGSDVMEPFLVTLDGFTPTGDTFSRLLMLPPSPPEDPFTGSATGAMAAYLWHHGL
MDKAVFVAEQGHLMDRPGEAHVALVGDRSAPKGIRVGGRGFVLMRGEVGLPTSLQT
>Mature_296_residues
MQDFQFDWVDAFTDRPFGGNGCAVVHGGAHLPEAVACAYVRETSLVECTFTGPSEVADIKVRYFLASREIPFAGHPTIAT
VAAMRDRGLISGQRITLETGAGIVPVDLEDDLIVMQQVAPQFGVTPDRALVAAAISLPETAILGQPQLVSTGLPFCITVL
KDLDSLRAARLDAVAMEPLGRALGADGSDVMEPFLVTLDGFTPTGDTFSRLLMLPPSPPEDPFTGSATGAMAAYLWHHGL
MDKAVFVAEQGHLMDRPGEAHVALVGDRSAPKGIRVGGRGFVLMRGEVGLPTSLQT

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Escherichia coli, GI1787737, Length=299, Percent_Identity=30.7692307692308, Blast_Score=91, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 31352; Mature: 31352

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDFQFDWVDAFTDRPFGGNGCAVVHGGAHLPEAVACAYVRETSLVECTFTGPSEVADIK
CCCCCCHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCCEEEE
VRYFLASREIPFAGHPTIATVAAMRDRGLISGQRITLETGAGIVPVDLEDDLIVMQQVAP
EEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCCHHHHHHCH
QFGVTPDRALVAAAISLPETAILGQPQLVSTGLPFCITVLKDLDSLRAARLDAVAMEPLG
HCCCCCCHHHHHHHHCCCCHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RALGADGSDVMEPFLVTLDGFTPTGDTFSRLLMLPPSPPEDPFTGSATGAMAAYLWHHGL
HHHCCCCHHHHCCEEEEECCCCCCCHHHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHCC
MDKAVFVAEQGHLMDRPGEAHVALVGDRSAPKGIRVGGRGFVLMRGEVGLPTSLQT
HHHEEEEECCCCCCCCCCCEEEEEEECCCCCCCEEECCCEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MQDFQFDWVDAFTDRPFGGNGCAVVHGGAHLPEAVACAYVRETSLVECTFTGPSEVADIK
CCCCCCHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCCEEEE
VRYFLASREIPFAGHPTIATVAAMRDRGLISGQRITLETGAGIVPVDLEDDLIVMQQVAP
EEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCCHHHHHHCH
QFGVTPDRALVAAAISLPETAILGQPQLVSTGLPFCITVLKDLDSLRAARLDAVAMEPLG
HCCCCCCHHHHHHHHCCCCHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RALGADGSDVMEPFLVTLDGFTPTGDTFSRLLMLPPSPPEDPFTGSATGAMAAYLWHHGL
HHHCCCCHHHHCCEEEEECCCCCCCHHHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHCC
MDKAVFVAEQGHLMDRPGEAHVALVGDRSAPKGIRVGGRGFVLMRGEVGLPTSLQT
HHHEEEEECCCCCCCCCCCEEEEEEECCCCCCCEEECCCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]