Click here to switch to the map view.

The map label for this gene is hslR [H]

Identifier: 99080415

GI number: 99080415

Start: 612509

End: 612883

Strand: Direct

Name: hslR [H]

Synonym: TM1040_0574

Alternate gene names: 99080415

Gene position: 612509-612883 (Clockwise)

Preceding gene: 99080414

Following gene: 99080416

Centisome position: 19.14

GC content: 58.4

Gene sequence:

>375_bases
ATGAGCGATCACGCGGACAAGATGCGGGTCGACAAATGGCTGTGGCACGCGCGGTTTTTCAAAACCCGCTCTCTCGCGGC
CAAGCAAGTCGGCGCAGGTCATGTCCGCGTGAATGGCTCCAAGGCTGCAAAGCCCTCTCAGAACGTCTCCATTGGGGACG
TTTTGACCTTTCCGCAGGGGCATCAGGTGCGCGTTGTGCGCATCACCTCCCTTTCGGAGCGGCGTGGACCAGCAACCGAG
GCTCAAACGCTGTACTTTGATATGACGGAGAAGCAGGACAAACCGCCTGCCAATCCCAAATACGAAGGAAAAGGTCGCCC
GGATAAGAAAGAGCGCAGGGCGCTTGGTCTTACTCGCGTCTGGGACGGGCATTGA

Upstream 100 bases:

>100_bases
ACCTACTCTGCGCGTCCTCCGAAGAAAGAAAAGCAGATCGACCCCGACAATCCCTTTGCCGCAGCTCTCATGGGGCTGAA
GCAGGGCGATTGAACCTGAC

Downstream 100 bases:

>100_bases
CGGCTTGAAGCCGCTGCCCATGTAGATTAGCTACTCCCCAGACACTTGAAACGGGATCCAAGCCAAGATGACCTACGTCG
TTACGGACAATTGTATTGCC

Product: RNA-binding S4

Products: NA

Alternate protein names: HSP15 [H]

Number of amino acids: Translated: 124; Mature: 123

Protein sequence:

>124_residues
MSDHADKMRVDKWLWHARFFKTRSLAAKQVGAGHVRVNGSKAAKPSQNVSIGDVLTFPQGHQVRVVRITSLSERRGPATE
AQTLYFDMTEKQDKPPANPKYEGKGRPDKKERRALGLTRVWDGH

Sequences:

>Translated_124_residues
MSDHADKMRVDKWLWHARFFKTRSLAAKQVGAGHVRVNGSKAAKPSQNVSIGDVLTFPQGHQVRVVRITSLSERRGPATE
AQTLYFDMTEKQDKPPANPKYEGKGRPDKKERRALGLTRVWDGH
>Mature_123_residues
SDHADKMRVDKWLWHARFFKTRSLAAKQVGAGHVRVNGSKAAKPSQNVSIGDVLTFPQGHQVRVVRITSLSERRGPATEA
QTLYFDMTEKQDKPPANPKYEGKGRPDKKERRALGLTRVWDGH

Specific function: Involved in the recycling of free 50S ribosomal subunits that still carry a nascent chain. Binds RNA more specifically than DNA. Binds with very high affinity to the free 50S ribosomal subunit. Does not bind it when it is part of the 70S ribosome [H]

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789803, Length=120, Percent_Identity=41.6666666666667, Blast_Score=83, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 14020; Mature: 13889

Theoretical pI: Translated: 11.06; Mature: 11.06

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDHADKMRVDKWLWHARFFKTRSLAAKQVGAGHVRVNGSKAAKPSQNVSIGDVLTFPQG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEEECCCC
HQVRVVRITSLSERRGPATEAQTLYFDMTEKQDKPPANPKYEGKGRPDKKERRALGLTRV
CEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEE
WDGH
ECCC
>Mature Secondary Structure 
SDHADKMRVDKWLWHARFFKTRSLAAKQVGAGHVRVNGSKAAKPSQNVSIGDVLTFPQG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEEECCCC
HQVRVVRITSLSERRGPATEAQTLYFDMTEKQDKPPANPKYEGKGRPDKKERRALGLTRV
CEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEE
WDGH
ECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]