| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is 99080283
Identifier: 99080283
GI number: 99080283
Start: 458711
End: 458974
Strand: Direct
Name: 99080283
Synonym: TM1040_0442
Alternate gene names: NA
Gene position: 458711-458974 (Clockwise)
Preceding gene: 99080282
Following gene: 99080285
Centisome position: 14.33
GC content: 63.64
Gene sequence:
>264_bases ATGTCCAAGACGTCAGGACTCTTAGCGACACTCTTTGCGGCGAGCGTGCTTGTGGCGGGGTGCAGCGACAATCAAGACAT CAACGCTGTGAGTGGCGCTCTCGCGGGTGCGGCTGTAGGCAACCAGGTTGGCTCTGGCAGCGGCAAGGTAGCCGCCACGC TGATCGGTGGTGCGGTCGGCGCGCAGATCGGTGCCAATGCGCCGCGTCAATGTACCTATCGCAACAGCGCCGGGCAGACC TACAAGGCCGCGTGCCCGTCGTAA
Upstream 100 bases:
>100_bases CGGTCAACCATCACCGGCGGCGAGGAGCCGGGAGGCAGTGTGGCGCATATGATGCGGCTCCTCCCCTTCTGGCTCCGGTC ATCAGAGAGGAGATGGATCA
Downstream 100 bases:
>100_bases CCTTTGTGCGCAACATGCAGTCTGCCCGCAGCTGCTCTGGCGCAGAGAGTGTCGCGCAAACAAAGGCTTCGTGCAAAGAA GAGGGCCGCCCAATCAAACG
Product: 17 kDa surface antigen
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 87; Mature: 86
Protein sequence:
>87_residues MSKTSGLLATLFAASVLVAGCSDNQDINAVSGALAGAAVGNQVGSGSGKVAATLIGGAVGAQIGANAPRQCTYRNSAGQT YKAACPS
Sequences:
>Translated_87_residues MSKTSGLLATLFAASVLVAGCSDNQDINAVSGALAGAAVGNQVGSGSGKVAATLIGGAVGAQIGANAPRQCTYRNSAGQT YKAACPS >Mature_86_residues SKTSGLLATLFAASVLVAGCSDNQDINAVSGALAGAAVGNQVGSGSGKVAATLIGGAVGAQIGANAPRQCTYRNSAGQTY KAACPS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 8287; Mature: 8156
Theoretical pI: Translated: 8.91; Mature: 8.91
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 3.5 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKTSGLLATLFAASVLVAGCSDNQDINAVSGALAGAAVGNQVGSGSGKVAATLIGGAVG CCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHH AQIGANAPRQCTYRNSAGQTYKAACPS HCCCCCCCCCCEECCCCCCEEECCCCC >Mature Secondary Structure SKTSGLLATLFAASVLVAGCSDNQDINAVSGALAGAAVGNQVGSGSGKVAATLIGGAVG CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHH AQIGANAPRQCTYRNSAGQTYKAACPS HCCCCCCCCCCEECCCCCCEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA