Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080255

Identifier: 99080255

GI number: 99080255

Start: 424111

End: 425442

Strand: Reverse

Name: 99080255

Synonym: TM1040_0414

Alternate gene names: NA

Gene position: 425442-424111 (Counterclockwise)

Preceding gene: 99080258

Following gene: 99080254

Centisome position: 13.29

GC content: 62.01

Gene sequence:

>1332_bases
ATGAAAACCGATGGAGAGTTTATGTCATTTGATGCCCTGCCCCCCCAGCGCCGCCGCATCGCCATCATTGGCGGTGGCAT
TTCCGGTCTGGCCGCCGCCTGGCTTCTTGGTCCGCGCCACGATGTGACCCTGTTTGAAGCGGCCGCGCGGTTTGGCGGGC
ATGCGCGCACAGTCGAGGCAGGCCTGCACGGGACCCAGCCGGTCGATACCGGGTTCATCGTGTTCAACTACGTGAACTAT
CCGCATCTCACGCGGATGTTTAACGAACTGGACGTGCCGGTTGTGCGCAGTGACATGTCATTTGGAGCCACCATCGAGAA
CGGTGCGATGGAATACGGACTGCGCAGCTTGGATGCGCTCTTTGGACAGCGCCGCAACCTTGCACGGCCCGCGTTCTTTG
GCATGGTCCGCGACATTCTGCGCTTCAACGCCCGCGCCGAAGAGTTCGCCCGCGACGACAGCACCACCATCGGCGAGTTG
GTCAAGGAACTCTCGCTCGGGGACTGGTTTCAGCGGTACTATCTGATGCCGATCTGTGGCGCGATCTGGTCAACCCCACC
CGAAGAAATCAGCGCCTTTCCAGCCCGGTCATTGGTGCGTTTCTTTCGCAACCACGCGCTGCTGTCGGCCACCGGTCAGC
ATCAGTGGTGGACGGTCAAAGGCGGCAGCCGAGAGTATGTCCGTCGCCTCACCCGGCACCTTCAGAACACCGGCGTTGAC
CTGCGCGCCGCCAGCCCTGTGCAAACGGTCGAGCGCCACGATGCGGGTGTGACCCTGCGTCTGGGCGATGGTCGTTCAGA
GCAATTCGACGAAGTGATCTTTGCCTGCCACTCCGATGATGCGCTGCGCCTCCTTGCTGCGCCGACGCCGCAGGAACAGG
CGACCCTCGGGGTGATGCGCTATCAGGACAACCACATGATCCTGCACCGTGACGCAAGCCAGATGCCCAAGCGGCGCGCC
TGCTGGTCCTCGTGGGTTTACAAGGCCGATCTGCGCGACGACCGTCCAGCTATTGGTGTCACCTACTGGATGAACCGTCT
GCAGAACTTGCCGGAAAACGATCCGCTGTTCGTGTCCCTAAACCCGGTGCAGGACGTCAATCCGCAGCTGATCTACGATG
ACAAGACCTTCCGCCATCCGGTTTTTGATCGCGCCGCGATCCGCGCGCAGGGGGCCGTTCAGGCCATGCAGGGCGAAAAC
CACACCTGGTTTGCAGGCGCCTATCTACGCCATGGGTTTCACGAAGACGGGTTTGCCAGTGCAGTTCGCGTCGCGCGGGC
CATTGATGCGCGCACCATGGGTAGCCGCAGCGCGCAGGACCTTGTCGCATGA

Upstream 100 bases:

>100_bases
CGAGCAGATCATAAAAAAATGCCTCATCCCGCAAAATAGTGCTCTGCCCCGAGTATTTTTTAGTTTTTTGATCCGATCGC
CCGTTTGGACTCGTAAGTTC

Downstream 100 bases:

>100_bases
GCGCAAGCGCGCCCATATCCCCCCTGGTAAAAGGGCCGCTGCATCTGGCAGGCACCACCACCCACGCCAGACGCGGCGCC
ATCCAGAACGCGTTTCGATA

Product: FAD dependent oxidoreductase

Products: NA

Alternate protein names: FAD Dependent Oxidoreductase; Amine Oxidase Flavin-Containing; Dehydrogenase; Amine Oxidoreductase; Flavin Containing Amine Oxidoreductase; Amino-Oxidase; Flavin-Containing Amine Oxidase; Oxidoreductase; Amine Oxidase Flavin-Containing Superfamily; Amine Oxidase Flavin-Containing Protein; Amine Oxidase Protein; FAD-Dependent Oxidoreductase; Amine OxidaseFAD Dependent Oxidoreductase; Amino Oxidase; Amine-Oxidase; Fad Dependent Oxidoreductase; Flavin Containing Amine Oxidoreductase Protein; Flavin Containing Amine Oxidoreductas

Number of amino acids: Translated: 443; Mature: 443

Protein sequence:

>443_residues
MKTDGEFMSFDALPPQRRRIAIIGGGISGLAAAWLLGPRHDVTLFEAAARFGGHARTVEAGLHGTQPVDTGFIVFNYVNY
PHLTRMFNELDVPVVRSDMSFGATIENGAMEYGLRSLDALFGQRRNLARPAFFGMVRDILRFNARAEEFARDDSTTIGEL
VKELSLGDWFQRYYLMPICGAIWSTPPEEISAFPARSLVRFFRNHALLSATGQHQWWTVKGGSREYVRRLTRHLQNTGVD
LRAASPVQTVERHDAGVTLRLGDGRSEQFDEVIFACHSDDALRLLAAPTPQEQATLGVMRYQDNHMILHRDASQMPKRRA
CWSSWVYKADLRDDRPAIGVTYWMNRLQNLPENDPLFVSLNPVQDVNPQLIYDDKTFRHPVFDRAAIRAQGAVQAMQGEN
HTWFAGAYLRHGFHEDGFASAVRVARAIDARTMGSRSAQDLVA

Sequences:

>Translated_443_residues
MKTDGEFMSFDALPPQRRRIAIIGGGISGLAAAWLLGPRHDVTLFEAAARFGGHARTVEAGLHGTQPVDTGFIVFNYVNY
PHLTRMFNELDVPVVRSDMSFGATIENGAMEYGLRSLDALFGQRRNLARPAFFGMVRDILRFNARAEEFARDDSTTIGEL
VKELSLGDWFQRYYLMPICGAIWSTPPEEISAFPARSLVRFFRNHALLSATGQHQWWTVKGGSREYVRRLTRHLQNTGVD
LRAASPVQTVERHDAGVTLRLGDGRSEQFDEVIFACHSDDALRLLAAPTPQEQATLGVMRYQDNHMILHRDASQMPKRRA
CWSSWVYKADLRDDRPAIGVTYWMNRLQNLPENDPLFVSLNPVQDVNPQLIYDDKTFRHPVFDRAAIRAQGAVQAMQGEN
HTWFAGAYLRHGFHEDGFASAVRVARAIDARTMGSRSAQDLVA
>Mature_443_residues
MKTDGEFMSFDALPPQRRRIAIIGGGISGLAAAWLLGPRHDVTLFEAAARFGGHARTVEAGLHGTQPVDTGFIVFNYVNY
PHLTRMFNELDVPVVRSDMSFGATIENGAMEYGLRSLDALFGQRRNLARPAFFGMVRDILRFNARAEEFARDDSTTIGEL
VKELSLGDWFQRYYLMPICGAIWSTPPEEISAFPARSLVRFFRNHALLSATGQHQWWTVKGGSREYVRRLTRHLQNTGVD
LRAASPVQTVERHDAGVTLRLGDGRSEQFDEVIFACHSDDALRLLAAPTPQEQATLGVMRYQDNHMILHRDASQMPKRRA
CWSSWVYKADLRDDRPAIGVTYWMNRLQNLPENDPLFVSLNPVQDVNPQLIYDDKTFRHPVFDRAAIRAQGAVQAMQGEN
HTWFAGAYLRHGFHEDGFASAVRVARAIDARTMGSRSAQDLVA

Specific function: Unknown

COG id: COG2907

COG function: function code R; Predicted NAD/FAD-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49892; Mature: 49892

Theoretical pI: Translated: 7.81; Mature: 7.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTDGEFMSFDALPPQRRRIAIIGGGISGLAAAWLLGPRHDVTLFEAAARFGGHARTVEA
CCCCCCEEEECCCCCCCCEEEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEC
GLHGTQPVDTGFIVFNYVNYPHLTRMFNELDVPVVRSDMSFGATIENGAMEYGLRSLDAL
CCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEECCCCCCCEECCCHHHHHHHHHHHH
FGQRRNLARPAFFGMVRDILRFNARAEEFARDDSTTIGELVKELSLGDWFQRYYLMPICG
HHHHCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHH
AIWSTPPEEISAFPARSLVRFFRNHALLSATGQHQWWTVKGGSREYVRRLTRHLQNTGVD
HHHCCCHHHHHHCCHHHHHHHHHCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCC
LRAASPVQTVERHDAGVTLRLGDGRSEQFDEVIFACHSDDALRLLAAPTPQEQATLGVMR
EEECCCHHHHHHCCCCEEEEECCCCCHHHHHHHEEECCCCCEEEEECCCCCHHHHEEEEE
YQDNHMILHRDASQMPKRRACWSSWVYKADLRDDRPAIGVTYWMNRLQNLPENDPLFVSL
EECCEEEEECCHHHCCHHHHHHHHCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEEE
NPVQDVNPQLIYDDKTFRHPVFDRAAIRAQGAVQAMQGENHTWFAGAYLRHGFHEDGFAS
CCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCHHHH
AVRVARAIDARTMGSRSAQDLVA
HHHHHHHHHHHHCCCCCHHHHCC
>Mature Secondary Structure
MKTDGEFMSFDALPPQRRRIAIIGGGISGLAAAWLLGPRHDVTLFEAAARFGGHARTVEA
CCCCCCEEEECCCCCCCCEEEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEC
GLHGTQPVDTGFIVFNYVNYPHLTRMFNELDVPVVRSDMSFGATIENGAMEYGLRSLDAL
CCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEECCCCCCCEECCCHHHHHHHHHHHH
FGQRRNLARPAFFGMVRDILRFNARAEEFARDDSTTIGELVKELSLGDWFQRYYLMPICG
HHHHCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHH
AIWSTPPEEISAFPARSLVRFFRNHALLSATGQHQWWTVKGGSREYVRRLTRHLQNTGVD
HHHCCCHHHHHHCCHHHHHHHHHCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCC
LRAASPVQTVERHDAGVTLRLGDGRSEQFDEVIFACHSDDALRLLAAPTPQEQATLGVMR
EEECCCHHHHHHCCCCEEEEECCCCCHHHHHHHEEECCCCCEEEEECCCCCHHHHEEEEE
YQDNHMILHRDASQMPKRRACWSSWVYKADLRDDRPAIGVTYWMNRLQNLPENDPLFVSL
EECCEEEEECCHHHCCHHHHHHHHCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEEE
NPVQDVNPQLIYDDKTFRHPVFDRAAIRAQGAVQAMQGENHTWFAGAYLRHGFHEDGFAS
CCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCHHHH
AVRVARAIDARTMGSRSAQDLVA
HHHHHHHHHHHHCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA