| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080255
Identifier: 99080255
GI number: 99080255
Start: 424111
End: 425442
Strand: Reverse
Name: 99080255
Synonym: TM1040_0414
Alternate gene names: NA
Gene position: 425442-424111 (Counterclockwise)
Preceding gene: 99080258
Following gene: 99080254
Centisome position: 13.29
GC content: 62.01
Gene sequence:
>1332_bases ATGAAAACCGATGGAGAGTTTATGTCATTTGATGCCCTGCCCCCCCAGCGCCGCCGCATCGCCATCATTGGCGGTGGCAT TTCCGGTCTGGCCGCCGCCTGGCTTCTTGGTCCGCGCCACGATGTGACCCTGTTTGAAGCGGCCGCGCGGTTTGGCGGGC ATGCGCGCACAGTCGAGGCAGGCCTGCACGGGACCCAGCCGGTCGATACCGGGTTCATCGTGTTCAACTACGTGAACTAT CCGCATCTCACGCGGATGTTTAACGAACTGGACGTGCCGGTTGTGCGCAGTGACATGTCATTTGGAGCCACCATCGAGAA CGGTGCGATGGAATACGGACTGCGCAGCTTGGATGCGCTCTTTGGACAGCGCCGCAACCTTGCACGGCCCGCGTTCTTTG GCATGGTCCGCGACATTCTGCGCTTCAACGCCCGCGCCGAAGAGTTCGCCCGCGACGACAGCACCACCATCGGCGAGTTG GTCAAGGAACTCTCGCTCGGGGACTGGTTTCAGCGGTACTATCTGATGCCGATCTGTGGCGCGATCTGGTCAACCCCACC CGAAGAAATCAGCGCCTTTCCAGCCCGGTCATTGGTGCGTTTCTTTCGCAACCACGCGCTGCTGTCGGCCACCGGTCAGC ATCAGTGGTGGACGGTCAAAGGCGGCAGCCGAGAGTATGTCCGTCGCCTCACCCGGCACCTTCAGAACACCGGCGTTGAC CTGCGCGCCGCCAGCCCTGTGCAAACGGTCGAGCGCCACGATGCGGGTGTGACCCTGCGTCTGGGCGATGGTCGTTCAGA GCAATTCGACGAAGTGATCTTTGCCTGCCACTCCGATGATGCGCTGCGCCTCCTTGCTGCGCCGACGCCGCAGGAACAGG CGACCCTCGGGGTGATGCGCTATCAGGACAACCACATGATCCTGCACCGTGACGCAAGCCAGATGCCCAAGCGGCGCGCC TGCTGGTCCTCGTGGGTTTACAAGGCCGATCTGCGCGACGACCGTCCAGCTATTGGTGTCACCTACTGGATGAACCGTCT GCAGAACTTGCCGGAAAACGATCCGCTGTTCGTGTCCCTAAACCCGGTGCAGGACGTCAATCCGCAGCTGATCTACGATG ACAAGACCTTCCGCCATCCGGTTTTTGATCGCGCCGCGATCCGCGCGCAGGGGGCCGTTCAGGCCATGCAGGGCGAAAAC CACACCTGGTTTGCAGGCGCCTATCTACGCCATGGGTTTCACGAAGACGGGTTTGCCAGTGCAGTTCGCGTCGCGCGGGC CATTGATGCGCGCACCATGGGTAGCCGCAGCGCGCAGGACCTTGTCGCATGA
Upstream 100 bases:
>100_bases CGAGCAGATCATAAAAAAATGCCTCATCCCGCAAAATAGTGCTCTGCCCCGAGTATTTTTTAGTTTTTTGATCCGATCGC CCGTTTGGACTCGTAAGTTC
Downstream 100 bases:
>100_bases GCGCAAGCGCGCCCATATCCCCCCTGGTAAAAGGGCCGCTGCATCTGGCAGGCACCACCACCCACGCCAGACGCGGCGCC ATCCAGAACGCGTTTCGATA
Product: FAD dependent oxidoreductase
Products: NA
Alternate protein names: FAD Dependent Oxidoreductase; Amine Oxidase Flavin-Containing; Dehydrogenase; Amine Oxidoreductase; Flavin Containing Amine Oxidoreductase; Amino-Oxidase; Flavin-Containing Amine Oxidase; Oxidoreductase; Amine Oxidase Flavin-Containing Superfamily; Amine Oxidase Flavin-Containing Protein; Amine Oxidase Protein; FAD-Dependent Oxidoreductase; Amine OxidaseFAD Dependent Oxidoreductase; Amino Oxidase; Amine-Oxidase; Fad Dependent Oxidoreductase; Flavin Containing Amine Oxidoreductase Protein; Flavin Containing Amine Oxidoreductas
Number of amino acids: Translated: 443; Mature: 443
Protein sequence:
>443_residues MKTDGEFMSFDALPPQRRRIAIIGGGISGLAAAWLLGPRHDVTLFEAAARFGGHARTVEAGLHGTQPVDTGFIVFNYVNY PHLTRMFNELDVPVVRSDMSFGATIENGAMEYGLRSLDALFGQRRNLARPAFFGMVRDILRFNARAEEFARDDSTTIGEL VKELSLGDWFQRYYLMPICGAIWSTPPEEISAFPARSLVRFFRNHALLSATGQHQWWTVKGGSREYVRRLTRHLQNTGVD LRAASPVQTVERHDAGVTLRLGDGRSEQFDEVIFACHSDDALRLLAAPTPQEQATLGVMRYQDNHMILHRDASQMPKRRA CWSSWVYKADLRDDRPAIGVTYWMNRLQNLPENDPLFVSLNPVQDVNPQLIYDDKTFRHPVFDRAAIRAQGAVQAMQGEN HTWFAGAYLRHGFHEDGFASAVRVARAIDARTMGSRSAQDLVA
Sequences:
>Translated_443_residues MKTDGEFMSFDALPPQRRRIAIIGGGISGLAAAWLLGPRHDVTLFEAAARFGGHARTVEAGLHGTQPVDTGFIVFNYVNY PHLTRMFNELDVPVVRSDMSFGATIENGAMEYGLRSLDALFGQRRNLARPAFFGMVRDILRFNARAEEFARDDSTTIGEL VKELSLGDWFQRYYLMPICGAIWSTPPEEISAFPARSLVRFFRNHALLSATGQHQWWTVKGGSREYVRRLTRHLQNTGVD LRAASPVQTVERHDAGVTLRLGDGRSEQFDEVIFACHSDDALRLLAAPTPQEQATLGVMRYQDNHMILHRDASQMPKRRA CWSSWVYKADLRDDRPAIGVTYWMNRLQNLPENDPLFVSLNPVQDVNPQLIYDDKTFRHPVFDRAAIRAQGAVQAMQGEN HTWFAGAYLRHGFHEDGFASAVRVARAIDARTMGSRSAQDLVA >Mature_443_residues MKTDGEFMSFDALPPQRRRIAIIGGGISGLAAAWLLGPRHDVTLFEAAARFGGHARTVEAGLHGTQPVDTGFIVFNYVNY PHLTRMFNELDVPVVRSDMSFGATIENGAMEYGLRSLDALFGQRRNLARPAFFGMVRDILRFNARAEEFARDDSTTIGEL VKELSLGDWFQRYYLMPICGAIWSTPPEEISAFPARSLVRFFRNHALLSATGQHQWWTVKGGSREYVRRLTRHLQNTGVD LRAASPVQTVERHDAGVTLRLGDGRSEQFDEVIFACHSDDALRLLAAPTPQEQATLGVMRYQDNHMILHRDASQMPKRRA CWSSWVYKADLRDDRPAIGVTYWMNRLQNLPENDPLFVSLNPVQDVNPQLIYDDKTFRHPVFDRAAIRAQGAVQAMQGEN HTWFAGAYLRHGFHEDGFASAVRVARAIDARTMGSRSAQDLVA
Specific function: Unknown
COG id: COG2907
COG function: function code R; Predicted NAD/FAD-binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49892; Mature: 49892
Theoretical pI: Translated: 7.81; Mature: 7.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTDGEFMSFDALPPQRRRIAIIGGGISGLAAAWLLGPRHDVTLFEAAARFGGHARTVEA CCCCCCEEEECCCCCCCCEEEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEC GLHGTQPVDTGFIVFNYVNYPHLTRMFNELDVPVVRSDMSFGATIENGAMEYGLRSLDAL CCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEECCCCCCCEECCCHHHHHHHHHHHH FGQRRNLARPAFFGMVRDILRFNARAEEFARDDSTTIGELVKELSLGDWFQRYYLMPICG HHHHCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHH AIWSTPPEEISAFPARSLVRFFRNHALLSATGQHQWWTVKGGSREYVRRLTRHLQNTGVD HHHCCCHHHHHHCCHHHHHHHHHCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCC LRAASPVQTVERHDAGVTLRLGDGRSEQFDEVIFACHSDDALRLLAAPTPQEQATLGVMR EEECCCHHHHHHCCCCEEEEECCCCCHHHHHHHEEECCCCCEEEEECCCCCHHHHEEEEE YQDNHMILHRDASQMPKRRACWSSWVYKADLRDDRPAIGVTYWMNRLQNLPENDPLFVSL EECCEEEEECCHHHCCHHHHHHHHCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEEE NPVQDVNPQLIYDDKTFRHPVFDRAAIRAQGAVQAMQGENHTWFAGAYLRHGFHEDGFAS CCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCHHHH AVRVARAIDARTMGSRSAQDLVA HHHHHHHHHHHHCCCCCHHHHCC >Mature Secondary Structure MKTDGEFMSFDALPPQRRRIAIIGGGISGLAAAWLLGPRHDVTLFEAAARFGGHARTVEA CCCCCCEEEECCCCCCCCEEEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEC GLHGTQPVDTGFIVFNYVNYPHLTRMFNELDVPVVRSDMSFGATIENGAMEYGLRSLDAL CCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEECCCCCCCEECCCHHHHHHHHHHHH FGQRRNLARPAFFGMVRDILRFNARAEEFARDDSTTIGELVKELSLGDWFQRYYLMPICG HHHHCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHH AIWSTPPEEISAFPARSLVRFFRNHALLSATGQHQWWTVKGGSREYVRRLTRHLQNTGVD HHHCCCHHHHHHCCHHHHHHHHHCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCC LRAASPVQTVERHDAGVTLRLGDGRSEQFDEVIFACHSDDALRLLAAPTPQEQATLGVMR EEECCCHHHHHHCCCCEEEEECCCCCHHHHHHHEEECCCCCEEEEECCCCCHHHHEEEEE YQDNHMILHRDASQMPKRRACWSSWVYKADLRDDRPAIGVTYWMNRLQNLPENDPLFVSL EECCEEEEECCHHHCCHHHHHHHHCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEEE NPVQDVNPQLIYDDKTFRHPVFDRAAIRAQGAVQAMQGENHTWFAGAYLRHGFHEDGFAS CCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCHHHH AVRVARAIDARTMGSRSAQDLVA HHHHHHHHHHHHCCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA