Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080252

Identifier: 99080252

GI number: 99080252

Start: 421643

End: 422185

Strand: Reverse

Name: 99080252

Synonym: TM1040_0411

Alternate gene names: NA

Gene position: 422185-421643 (Counterclockwise)

Preceding gene: 99080253

Following gene: 99080251

Centisome position: 13.19

GC content: 62.25

Gene sequence:

>543_bases
ATGCGACCTAAAACCGGCCTCACCGCCCTCTGTTGCTGGTTTGCAGGCGTCGCGCTCTTTACGGCCGTGACGCTGGCGAC
GCCGCTTGCGGCGAACCCGGTTTCCACCGGGCTGCGCGCCCCTGTGGAACTGGGTAAGGCAACGCTGCGGTTTCTGGGCT
TCGAGATCTACACGGCGACGCTCCATATTGAGGGAGCGCGGCGCTTTGACTGGAACCAGCCGCTGTCGCTTCGCATTGAT
TATGCGCGGGGGTTTTCCGATGCGGAGCTCCTTGAAGGCACCGAGAAAGAGCTTCAGCGGATTGAGGGTGCGCGGTCCGA
CCAGCCCCAGATGCTGCAAAAGCTTGCCAGCTGCTTTCGCGATGTAAACTCAGGCGACAGCTATGTTGCCGTCTCTCCTG
CTGCCAACGTCATCGACATGCGCCTCAACGGGCAACGCACCTGCCGGATCTCGCATCCGGATCTGCGCAAGCGTTTCCTC
GGGATCTGGCTCTCGCCAAACAGCCGCTCTGCGCGTTTGTCTGCGCAACTGCGGGGGGAGTGA

Upstream 100 bases:

>100_bases
TATGACCAGAGTTTCTTGCGCAACTGGCAGTTCTACCTGCAGATTTGCGCAGCCTCTTTCGAAACCCGCCAGACCGATGT
GGTTCAGGTGGAGCTGGCTC

Downstream 100 bases:

>100_bases
CAGTGAACTGGCGGGTCAGCACATATGCACTGATGCTGGCTGCGGCTGGCTTGCCGCTCTATATCCACCTACCGCGATAC
GCGACGGGGGAGCTTGGCAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MRPKTGLTALCCWFAGVALFTAVTLATPLAANPVSTGLRAPVELGKATLRFLGFEIYTATLHIEGARRFDWNQPLSLRID
YARGFSDAELLEGTEKELQRIEGARSDQPQMLQKLASCFRDVNSGDSYVAVSPAANVIDMRLNGQRTCRISHPDLRKRFL
GIWLSPNSRSARLSAQLRGE

Sequences:

>Translated_180_residues
MRPKTGLTALCCWFAGVALFTAVTLATPLAANPVSTGLRAPVELGKATLRFLGFEIYTATLHIEGARRFDWNQPLSLRID
YARGFSDAELLEGTEKELQRIEGARSDQPQMLQKLASCFRDVNSGDSYVAVSPAANVIDMRLNGQRTCRISHPDLRKRFL
GIWLSPNSRSARLSAQLRGE
>Mature_180_residues
MRPKTGLTALCCWFAGVALFTAVTLATPLAANPVSTGLRAPVELGKATLRFLGFEIYTATLHIEGARRFDWNQPLSLRID
YARGFSDAELLEGTEKELQRIEGARSDQPQMLQKLASCFRDVNSGDSYVAVSPAANVIDMRLNGQRTCRISHPDLRKRFL
GIWLSPNSRSARLSAQLRGE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19910; Mature: 19910

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPKTGLTALCCWFAGVALFTAVTLATPLAANPVSTGLRAPVELGKATLRFLGFEIYTAT
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEEEEE
LHIEGARRFDWNQPLSLRIDYARGFSDAELLEGTEKELQRIEGARSDQPQMLQKLASCFR
EEECCCCCCCCCCCEEEEEECCCCCCHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHH
DVNSGDSYVAVSPAANVIDMRLNGQRTCRISHPDLRKRFLGIWLSPNSRSARLSAQLRGE
CCCCCCCEEEECCCCCEEEEEECCCEEEEECCHHHHHHHEEEEECCCCCCEEEEEEECCC
>Mature Secondary Structure
MRPKTGLTALCCWFAGVALFTAVTLATPLAANPVSTGLRAPVELGKATLRFLGFEIYTAT
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEEEEE
LHIEGARRFDWNQPLSLRIDYARGFSDAELLEGTEKELQRIEGARSDQPQMLQKLASCFR
EEECCCCCCCCCCCEEEEEECCCCCCHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHH
DVNSGDSYVAVSPAANVIDMRLNGQRTCRISHPDLRKRFLGIWLSPNSRSARLSAQLRGE
CCCCCCCEEEECCCCCEEEEEECCCEEEEECCHHHHHHHEEEEECCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA