| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is mcpA [H]
Identifier: 99080200
GI number: 99080200
Start: 365386
End: 368169
Strand: Direct
Name: mcpA [H]
Synonym: TM1040_0359
Alternate gene names: 99080200
Gene position: 365386-368169 (Clockwise)
Preceding gene: 99080199
Following gene: 99080201
Centisome position: 11.41
GC content: 61.53
Gene sequence:
>2784_bases ATGCCTAAGCTGAAGACTTCCTCATCCATCAAACGTCCTGGTTTTGGTGTGTTCCGTAGTATCCGTGCCAAGATGAGCCT GATCCTATTTGTCATGGGGGCGTCGTTTTGCGTCTTCGCCTACATGATCCACACGGTTCTGTCGGGCATCGACCGGGACA TGACCACGCTCAATTCAAAGGATCTCCCGGGGCTGGAACTGGCGGGGGAGATTTCTCTGGCTTCTGAACAAGCCAAGAAC ACCATGTTGTCGCTGATTTCCGCCACCGAGGTTTCCGTGATCGACACGGCCTCGCGCGAAGCTGAGGCCGCCGCAGAGCA TATGATGCAGTTGATCGGCCAGCTTGATGCGGAGATGCAGCCCGTGTTCGAAGCGCAGGCGACTCAGGTTGCGGGGGCGC TCTCGGATCTGGCTGATGCGCGGCGCGATGCGCTCAATAGCGAGGCGCAGATCGAAGCGGAAATCGAGGCTTTCAACATC ATCGTCAATGACCTTGGGGAGCTGATGACGGGGCTGGTGCAGGCGGCATCGGTGGAGTTGAACCGTGGCGCGGCGAATAC CTATGACGCCATCGACAAATCCCTGAAGCTCTTGGTCGAGCGCGATTTTCACAACTTGGAGCTGCTCCTCGAAGCGCGGG CCGAACTGAACCTTCTGGCGGGGGCTGCCGTGGCCTTTGGGGGTACCAAGGACAAGGAAACGATTGCGAGGCTGCAAGCG CTCGCTGACAGTTCTGATGCCCGCCTGCAGGAGATTTCCGAGGAGATTGAGGCGAACGCGCCCGAAATGCTGGATGTTTC GCTCATCCACAGCGCCCTCTTTACGCTGCAATCCGTGATTGCGCAGAGCCTGTTTCCGTCCGAGTCCCTGCGCCAAGCCG CAATGAAATCCCGCGCCGACACGGATCGGTTTATCGTCATGGCGATTGATGCGCAGCTGTTGAAGCTCTCCGCCTCTGCG GCGCGCACCAGCAAGGAAAACGGTGACACGCTGCGTGAGCTGATGACCAATGAAGTGGGCTTTCTCAATGTCCTGATGGA GATCAGCCAGCATCTGAACAGTTTTCAGGTTGCGGCGCTTGATGTGTTGACCGCCTCGGATGAACAGCAGGTGAAGGACG CGGCATTCTCGCTCTCGCAGGCGAGCCGCAATCTGGCGAATTACACCGATTTTCAGGACCCGCTTGTTGTCGAGCTTCTC AGCCGTGTGGCCGCCTTTGCCGAAGAGGAAGCCGGGCTTGCCGCCCTGCGCATGAATGAGCTTTCAGCGCGCGCCGCCGC CCAGGAGGCCACGCAGAAAACCGAGGCAACGGTGCTGGAAATTGCGGACCGTGCCTCTGAGTTTGCCGCCCAGACTCTTG GCGTCATCCGCACCATGTCCAGTGACATCTCGGGCGAAGTGGCAACGGCCAGCCGCAACATGGTGATTTCTCTGGCGATG GCTGCGGGCGTTTTCCTGACGGCCTTGCTGGTGACCCAGCTTCTGATCCTGCGTCCGTTGAACCGGATCAGTGCGAGCAC GGAACGGCTTGCGGAGGGGGATCGCAGCCCTGTCACCGGGTTTGAACGCACCAGTACAGAGATTTACCGGATCGCGCGCT CGCTGTCGGTGTTTCGCGATGGGATCGTCGAAAAAGAAGAGCTCGAAGAGATGGCGGCCGCCGAACGGCAGGAGCGCGAA CGGGTGCAGGCCAAGGCGGTCGAGGCGCTGGGCACGGGGCTGGAGCGCCTCTCCAGCGGGGATCTGACCGGCCACATCCA CGAAGAACTCGGCGAGGGCTATGACCGGCTGCGGCTTGACTTCAACCGCACGCTCGACACCTTGAATGACACTGTCGGCC AGGTGATCGACACCTCTGCCTCCATTCGCAACGGCGCCTCGGAAATCAGCCAGGCCTCGCAGGACCTGTCGCATCGCACC GAAAGCCAGGCCGCGACGCTCGAAGAGACCGCCGCCGCATTGGATGAGATGACGGCCAGCGTGACCTCTGCCGCGGAAGG CGCGCGCGATGTGGAACGCACCTCGAACGAGGCGCGCAGCGAGGCCGAAGCCAGTGGCGATATCGTGCGCAGCGCGGTTT CGGCGATGACCGAGATCGAACAGAGTTCGGGCAAGATCGCGCAGATCATCTCGGTGATTGACGATATCGCCTTTCAGACC AACCTCTTGGCGCTCAATGCCGGTGTCGAGGCGGCCCGGGCCGGGGAGGCGGGGCGTGGCTTTGCGGTTGTGGCCTCCGA GGTGCGTGGCCTTGCGCAGCGCTCTTCGGATGCGGCGCTGGAAATCAAGAACCTGATCAGCGACAGCTCGAAACAGGTGG AGCGTGGTGTTGATCTTGTGGGCAAGGCCGGGGAGGCGCTGGACAACATCCTGAACCGCGTGAGTCATGTCTCTGAGCTG ATTTCCGGGATCGCCACCGGTGCGCAGGAGCAATCCACGGGGCTCTTGGAAATCAACACGGGTATGAACCAGCTGGATCA GGTGACCCAGCAAAACGCTGCCATGGTCGAGGAGGCCACTGCGGCGAGCCAGCTCCTGAACACGGATGCGGAGACGCTTG CGGATCTGGTGGCCCGGTTCCAGACGGCAAATACGGCGCGGACCCCTGCCGCGGGCGCTGGGGATGTGGGCGAGGACGCC GGATCAGAGGCGCTTGCCCCCACAAGCTGGGGCGATGCACAGGACATCGAGTGGGAGGCCACCGAGGTCGAAGAGCCCTT TGTCCCGGAGCAGACAGACTGGTCCGACTTTGATGGCGACGACACTCAGGCAACCGGGACGTAA
Upstream 100 bases:
>100_bases CCGCGCTCCGGTCATTTGGCGGTGCGAGATCGCTTGACCTACGCTGCCGCCTCCTCCGCGCTCTTGCGCTGCCCTGACTC AACCCCACGCAGAGGACACT
Downstream 100 bases:
>100_bases TACTCCGGCCCAATCTGAACACGAAGCACCCCGGCAGGCCCACTGTGCCCGCCGGGGTCTTTTTATGCCTCGAGTAACAT TCCGCTATGAGGTACATAAT
Product: methyl-accepting chemotaxis sensory transducer
Products: NA
Alternate protein names: Methyl-accepting chemotaxis protein [H]
Number of amino acids: Translated: 927; Mature: 926
Protein sequence:
>927_residues MPKLKTSSSIKRPGFGVFRSIRAKMSLILFVMGASFCVFAYMIHTVLSGIDRDMTTLNSKDLPGLELAGEISLASEQAKN TMLSLISATEVSVIDTASREAEAAAEHMMQLIGQLDAEMQPVFEAQATQVAGALSDLADARRDALNSEAQIEAEIEAFNI IVNDLGELMTGLVQAASVELNRGAANTYDAIDKSLKLLVERDFHNLELLLEARAELNLLAGAAVAFGGTKDKETIARLQA LADSSDARLQEISEEIEANAPEMLDVSLIHSALFTLQSVIAQSLFPSESLRQAAMKSRADTDRFIVMAIDAQLLKLSASA ARTSKENGDTLRELMTNEVGFLNVLMEISQHLNSFQVAALDVLTASDEQQVKDAAFSLSQASRNLANYTDFQDPLVVELL SRVAAFAEEEAGLAALRMNELSARAAAQEATQKTEATVLEIADRASEFAAQTLGVIRTMSSDISGEVATASRNMVISLAM AAGVFLTALLVTQLLILRPLNRISASTERLAEGDRSPVTGFERTSTEIYRIARSLSVFRDGIVEKEELEEMAAAERQERE RVQAKAVEALGTGLERLSSGDLTGHIHEELGEGYDRLRLDFNRTLDTLNDTVGQVIDTSASIRNGASEISQASQDLSHRT ESQAATLEETAAALDEMTASVTSAAEGARDVERTSNEARSEAEASGDIVRSAVSAMTEIEQSSGKIAQIISVIDDIAFQT NLLALNAGVEAARAGEAGRGFAVVASEVRGLAQRSSDAALEIKNLISDSSKQVERGVDLVGKAGEALDNILNRVSHVSEL ISGIATGAQEQSTGLLEINTGMNQLDQVTQQNAAMVEEATAASQLLNTDAETLADLVARFQTANTARTPAAGAGDVGEDA GSEALAPTSWGDAQDIEWEATEVEEPFVPEQTDWSDFDGDDTQATGT
Sequences:
>Translated_927_residues MPKLKTSSSIKRPGFGVFRSIRAKMSLILFVMGASFCVFAYMIHTVLSGIDRDMTTLNSKDLPGLELAGEISLASEQAKN TMLSLISATEVSVIDTASREAEAAAEHMMQLIGQLDAEMQPVFEAQATQVAGALSDLADARRDALNSEAQIEAEIEAFNI IVNDLGELMTGLVQAASVELNRGAANTYDAIDKSLKLLVERDFHNLELLLEARAELNLLAGAAVAFGGTKDKETIARLQA LADSSDARLQEISEEIEANAPEMLDVSLIHSALFTLQSVIAQSLFPSESLRQAAMKSRADTDRFIVMAIDAQLLKLSASA ARTSKENGDTLRELMTNEVGFLNVLMEISQHLNSFQVAALDVLTASDEQQVKDAAFSLSQASRNLANYTDFQDPLVVELL SRVAAFAEEEAGLAALRMNELSARAAAQEATQKTEATVLEIADRASEFAAQTLGVIRTMSSDISGEVATASRNMVISLAM AAGVFLTALLVTQLLILRPLNRISASTERLAEGDRSPVTGFERTSTEIYRIARSLSVFRDGIVEKEELEEMAAAERQERE RVQAKAVEALGTGLERLSSGDLTGHIHEELGEGYDRLRLDFNRTLDTLNDTVGQVIDTSASIRNGASEISQASQDLSHRT ESQAATLEETAAALDEMTASVTSAAEGARDVERTSNEARSEAEASGDIVRSAVSAMTEIEQSSGKIAQIISVIDDIAFQT NLLALNAGVEAARAGEAGRGFAVVASEVRGLAQRSSDAALEIKNLISDSSKQVERGVDLVGKAGEALDNILNRVSHVSEL ISGIATGAQEQSTGLLEINTGMNQLDQVTQQNAAMVEEATAASQLLNTDAETLADLVARFQTANTARTPAAGAGDVGEDA GSEALAPTSWGDAQDIEWEATEVEEPFVPEQTDWSDFDGDDTQATGT >Mature_926_residues PKLKTSSSIKRPGFGVFRSIRAKMSLILFVMGASFCVFAYMIHTVLSGIDRDMTTLNSKDLPGLELAGEISLASEQAKNT MLSLISATEVSVIDTASREAEAAAEHMMQLIGQLDAEMQPVFEAQATQVAGALSDLADARRDALNSEAQIEAEIEAFNII VNDLGELMTGLVQAASVELNRGAANTYDAIDKSLKLLVERDFHNLELLLEARAELNLLAGAAVAFGGTKDKETIARLQAL ADSSDARLQEISEEIEANAPEMLDVSLIHSALFTLQSVIAQSLFPSESLRQAAMKSRADTDRFIVMAIDAQLLKLSASAA RTSKENGDTLRELMTNEVGFLNVLMEISQHLNSFQVAALDVLTASDEQQVKDAAFSLSQASRNLANYTDFQDPLVVELLS RVAAFAEEEAGLAALRMNELSARAAAQEATQKTEATVLEIADRASEFAAQTLGVIRTMSSDISGEVATASRNMVISLAMA AGVFLTALLVTQLLILRPLNRISASTERLAEGDRSPVTGFERTSTEIYRIARSLSVFRDGIVEKEELEEMAAAERQERER VQAKAVEALGTGLERLSSGDLTGHIHEELGEGYDRLRLDFNRTLDTLNDTVGQVIDTSASIRNGASEISQASQDLSHRTE SQAATLEETAAALDEMTASVTSAAEGARDVERTSNEARSEAEASGDIVRSAVSAMTEIEQSSGKIAQIISVIDDIAFQTN LLALNAGVEAARAGEAGRGFAVVASEVRGLAQRSSDAALEIKNLISDSSKQVERGVDLVGKAGEALDNILNRVSHVSELI SGIATGAQEQSTGLLEINTGMNQLDQVTQQNAAMVEEATAASQLLNTDAETLADLVARFQTANTARTPAAGAGDVGEDAG SEALAPTSWGDAQDIEWEATEVEEPFVPEQTDWSDFDGDDTQATGT
Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of
COG id: COG0840
COG function: function code NT; Methyl-accepting chemotaxis protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein. Note=Localized at the flagellum-bearing pole of the swarmer cell [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 methyl-accepting transducer domain [H]
Homologues:
Organism=Escherichia coli, GI1788195, Length=274, Percent_Identity=47.8102189781022, Blast_Score=210, Evalue=3e-55, Organism=Escherichia coli, GI1787690, Length=301, Percent_Identity=42.5249169435216, Blast_Score=209, Evalue=6e-55, Organism=Escherichia coli, GI2367378, Length=263, Percent_Identity=47.5285171102662, Blast_Score=204, Evalue=2e-53, Organism=Escherichia coli, GI1788194, Length=253, Percent_Identity=47.4308300395257, Blast_Score=201, Evalue=2e-52, Organism=Escherichia coli, GI1789453, Length=250, Percent_Identity=38.4, Blast_Score=163, Evalue=4e-41,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004090 - InterPro: IPR004089 - InterPro: IPR003660 [H]
Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]
EC number: NA
Molecular weight: Translated: 98964; Mature: 98833
Theoretical pI: Translated: 4.14; Mature: 4.14
Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKLKTSSSIKRPGFGVFRSIRAKMSLILFVMGASFCVFAYMIHTVLSGIDRDMTTLNSK CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCC DLPGLELAGEISLASEQAKNTMLSLISATEVSVIDTASREAEAAAEHMMQLIGQLDAEMQ CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHH PVFEAQATQVAGALSDLADARRDALNSEAQIEAEIEAFNIIVNDLGELMTGLVQAASVEL HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NRGAANTYDAIDKSLKLLVERDFHNLELLLEARAELNLLAGAAVAFGGTKDKETIARLQA CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH LADSSDARLQEISEEIEANAPEMLDVSLIHSALFTLQSVIAQSLFPSESLRQAAMKSRAD HHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC TDRFIVMAIDAQLLKLSASAARTSKENGDTLRELMTNEVGFLNVLMEISQHLNSFQVAAL CCCEEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHH DVLTASDEQQVKDAAFSLSQASRNLANYTDFQDPLVVELLSRVAAFAEEEAGLAALRMNE HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH LSARAAAQEATQKTEATVLEIADRASEFAAQTLGVIRTMSSDISGEVATASRNMVISLAM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHH AAGVFLTALLVTQLLILRPLNRISASTERLAEGDRSPVTGFERTSTEIYRIARSLSVFRD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH GIVEKEELEEMAAAERQERERVQAKAVEALGTGLERLSSGDLTGHIHEELGEGYDRLRLD CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHH FNRTLDTLNDTVGQVIDTSASIRNGASEISQASQDLSHRTESQAATLEETAAALDEMTAS HHHHHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VTSAAEGARDVERTSNEARSEAEASGDIVRSAVSAMTEIEQSSGKIAQIISVIDDIAFQT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH NLLALNAGVEAARAGEAGRGFAVVASEVRGLAQRSSDAALEIKNLISDSSKQVERGVDLV HHEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHH GKAGEALDNILNRVSHVSELISGIATGAQEQSTGLLEINTGMNQLDQVTQQNAAMVEEAT HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCEEEECCCHHHHHHHHHHHHHHHHHHH AASQLLNTDAETLADLVARFQTANTARTPAAGAGDVGEDAGSEALAPTSWGDAQDIEWEA HHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH TEVEEPFVPEQTDWSDFDGDDTQATGT HCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure PKLKTSSSIKRPGFGVFRSIRAKMSLILFVMGASFCVFAYMIHTVLSGIDRDMTTLNSK CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCC DLPGLELAGEISLASEQAKNTMLSLISATEVSVIDTASREAEAAAEHMMQLIGQLDAEMQ CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHH PVFEAQATQVAGALSDLADARRDALNSEAQIEAEIEAFNIIVNDLGELMTGLVQAASVEL HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NRGAANTYDAIDKSLKLLVERDFHNLELLLEARAELNLLAGAAVAFGGTKDKETIARLQA CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH LADSSDARLQEISEEIEANAPEMLDVSLIHSALFTLQSVIAQSLFPSESLRQAAMKSRAD HHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC TDRFIVMAIDAQLLKLSASAARTSKENGDTLRELMTNEVGFLNVLMEISQHLNSFQVAAL CCCEEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHH DVLTASDEQQVKDAAFSLSQASRNLANYTDFQDPLVVELLSRVAAFAEEEAGLAALRMNE HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH LSARAAAQEATQKTEATVLEIADRASEFAAQTLGVIRTMSSDISGEVATASRNMVISLAM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHH AAGVFLTALLVTQLLILRPLNRISASTERLAEGDRSPVTGFERTSTEIYRIARSLSVFRD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH GIVEKEELEEMAAAERQERERVQAKAVEALGTGLERLSSGDLTGHIHEELGEGYDRLRLD CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHH FNRTLDTLNDTVGQVIDTSASIRNGASEISQASQDLSHRTESQAATLEETAAALDEMTAS HHHHHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VTSAAEGARDVERTSNEARSEAEASGDIVRSAVSAMTEIEQSSGKIAQIISVIDDIAFQT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH NLLALNAGVEAARAGEAGRGFAVVASEVRGLAQRSSDAALEIKNLISDSSKQVERGVDLV HHEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHH GKAGEALDNILNRVSHVSELISGIATGAQEQSTGLLEINTGMNQLDQVTQQNAAMVEEAT HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCEEEECCCHHHHHHHHHHHHHHHHHHH AASQLLNTDAETLADLVARFQTANTARTPAAGAGDVGEDAGSEALAPTSWGDAQDIEWEA HHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH TEVEEPFVPEQTDWSDFDGDDTQATGT HCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1577276; 11259647 [H]