| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080198
Identifier: 99080198
GI number: 99080198
Start: 363053
End: 363667
Strand: Direct
Name: 99080198
Synonym: TM1040_0357
Alternate gene names: NA
Gene position: 363053-363667 (Clockwise)
Preceding gene: 99080197
Following gene: 99080199
Centisome position: 11.34
GC content: 59.84
Gene sequence:
>615_bases ATGCGGCGGGTGTTGCGGCCTTGGTGGGCGTTTCTTGACCGGATCTACAATGGAGCAGGTGTGGTCGCGGCGGTGTTCAT GGTGACGATCCTTCTGCTGATCGTCGGACAGATGATCGCGCGCTGGGCGTCGCTGACCTTTCCCGGCTCTACCGAATACG CGGGCTATGCCATGGCGGCCACGTCCTTTTTTGCGCTGGCCTACACGCTTACACATGGCGGCCATATCCGGGTGTCGATC TTTCTCAATATCGGCGGGCGCCATCATTTCTGGCTGGATGCGGGGGCAATGCTGATTTCGGCGCTCACCGCCACGTATTT CGCCCGCTACGCTATCAAGACAAACCTGTTGTCGCATATGCTCAACGACCGCACGCAAGGGCAGGATTACGCGCCTGAAT GGCTGCTGACCCTTGTGTCGATGTTTGGCACATGGCCGTGGAACTGGGGGCAGCTTTGGGCCGAAAGCGGGTCTGGCTGG GTCTACACTCCCGTCTGGCTACCGCAGCTGCCGATGTCGATCGGCACCGTTCTGTTGGCGATCGCGCTTTGGGATTACCT ATCTCGGATGCTGGTCACAGGCGCGCCACAGATCAAAGGGGAGGCTCTGGAATGA
Upstream 100 bases:
>100_bases TATGCGAGACTGGCAACCTGTTCTGGGCCTGCCTCTGTGGGTATGGCTTTTTGTTGTGCCAAGCGGCCTGATGCTGTTGT GCCTGTTTAAACCCGAGCCG
Downstream 100 bases:
>100_bases GCGAGATCTACACCACAGTCATTTTCCTCTTTGTGCTGTTTGCGCTTCTGGGCGGGTCGGTCTGGATCGGTCTCGCGCTG ATGGGCGTGGCCTGGGTCGG
Product: hypothetical protein
Products: NA
Alternate protein names: TRAP-Type C4-Dicarboxylate Transporter Small Permease
Number of amino acids: Translated: 204; Mature: 204
Protein sequence:
>204_residues MRRVLRPWWAFLDRIYNGAGVVAAVFMVTILLLIVGQMIARWASLTFPGSTEYAGYAMAATSFFALAYTLTHGGHIRVSI FLNIGGRHHFWLDAGAMLISALTATYFARYAIKTNLLSHMLNDRTQGQDYAPEWLLTLVSMFGTWPWNWGQLWAESGSGW VYTPVWLPQLPMSIGTVLLAIALWDYLSRMLVTGAPQIKGEALE
Sequences:
>Translated_204_residues MRRVLRPWWAFLDRIYNGAGVVAAVFMVTILLLIVGQMIARWASLTFPGSTEYAGYAMAATSFFALAYTLTHGGHIRVSI FLNIGGRHHFWLDAGAMLISALTATYFARYAIKTNLLSHMLNDRTQGQDYAPEWLLTLVSMFGTWPWNWGQLWAESGSGW VYTPVWLPQLPMSIGTVLLAIALWDYLSRMLVTGAPQIKGEALE >Mature_204_residues MRRVLRPWWAFLDRIYNGAGVVAAVFMVTILLLIVGQMIARWASLTFPGSTEYAGYAMAATSFFALAYTLTHGGHIRVSI FLNIGGRHHFWLDAGAMLISALTATYFARYAIKTNLLSHMLNDRTQGQDYAPEWLLTLVSMFGTWPWNWGQLWAESGSGW VYTPVWLPQLPMSIGTVLLAIALWDYLSRMLVTGAPQIKGEALE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22878; Mature: 22878
Theoretical pI: Translated: 9.26; Mature: 9.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRVLRPWWAFLDRIYNGAGVVAAVFMVTILLLIVGQMIARWASLTFPGSTEYAGYAMAA CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH TSFFALAYTLTHGGHIRVSIFLNIGGRHHFWLDAGAMLISALTATYFARYAIKTNLLSHM HHHHHHHHHHCCCCEEEEEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LNDRTQGQDYAPEWLLTLVSMFGTWPWNWGQLWAESGSGWVYTPVWLPQLPMSIGTVLLA HCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHH IALWDYLSRMLVTGAPQIKGEALE HHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MRRVLRPWWAFLDRIYNGAGVVAAVFMVTILLLIVGQMIARWASLTFPGSTEYAGYAMAA CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH TSFFALAYTLTHGGHIRVSIFLNIGGRHHFWLDAGAMLISALTATYFARYAIKTNLLSHM HHHHHHHHHHCCCCEEEEEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LNDRTQGQDYAPEWLLTLVSMFGTWPWNWGQLWAESGSGWVYTPVWLPQLPMSIGTVLLA HCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHH IALWDYLSRMLVTGAPQIKGEALE HHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA