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The map label for this gene is nocR [H]

Identifier: 99080195

GI number: 99080195

Start: 359541

End: 360473

Strand: Reverse

Name: nocR [H]

Synonym: TM1040_0354

Alternate gene names: 99080195

Gene position: 360473-359541 (Counterclockwise)

Preceding gene: 99080206

Following gene: 99080194

Centisome position: 11.26

GC content: 58.52

Gene sequence:

>933_bases
ATGAAACTCCGCTTTCGCCAGCTTCAGGCCTTTCACGCCATCGTGGAGACCGGCACCGTGACGGGTGCGGCGGGGCTCTT
GGGGATTTCGCAGCCCGGCGTCTCCAACCTGTTGTCTCAACTTGAGGATCAGGCCGGGATGGCTTTGTTCGAGCGGCTTC
ACGGGCGGCTCCTGCCTACCCCCGAAGCAGAGCTTCTCTTTGCCGAGGTCGACACAGTGATGCGCGGGATGAGCAAGGTC
ACGCAGACCATGGTGGATCTCAAGACGCGCAAGCTCGGACAGCTGCAGATCGCCTCCCAGCACGCGATGTCCTTTGGCTT
TATGCCCCGGTTGATCGCACGCTTTGCCTCAGATCGGCCCGAGCTCAACATCTCCTTTCAATCACAATATTCCAGCAAGG
TGCAGGAATGGGTCTGGAACGGGCTGTTTGAGATCGGCGTCTGCGAGATGCCGCTCCTTTACGACACGCTCACGGTTTAC
CCACTCTATGTGGAAACCATGCTAGCGCTCCACAAGGACAACCCACTGGCCCGTCATGAGGTGCTCACCCCGGAGCTGCT
GGCAGGCGAGCCCTTTATTGTGATGGGGCAGGACCACATGACCCACCGGCGTCTGCGCGAAGCCTTTCAGGACGCAGGCG
TGCCATTGCGCACCCGCGTGCATTCGCATCTGTTCAAGAACCTTCTGAGCTTCGTGCAAGAAGGCATGGGCGTGGCGCTC
CTTGATCGGTTCATGTTCGACTATGACATGCAGGGTGATGTCATCACGCGCCCGTTTCGCCCGACAATTCGCATGGATAT
GTGCGTGATCACCTCAAAATCGCGTCCCATGTCACAATTGGGCAAGGAGTTTCTTGACCTCCTCCTTGGTGAATTGCAGC
ACTATTCGGTAGAGGGGCGGCCCTTGGTGCCCGCAGAACGAAAACGGAGATAG

Upstream 100 bases:

>100_bases
CACGTCCCCAAACCTTGTTCCCTGCGAGACTGTCGACAATAGATCATCATTTCAAATACTATTTGATCATGAGAGCATCA
TCAAAACTTATGTACCCGTC

Downstream 100 bases:

>100_bases
CCATGCAACGCGGCGGCAAAACGGTCTATGGCGCGAGCATCGGCGTGTTGATGCTGGAAACACGCTTTCCCCGCATACCC
GGTGACATCGGCCATGCCGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MKLRFRQLQAFHAIVETGTVTGAAGLLGISQPGVSNLLSQLEDQAGMALFERLHGRLLPTPEAELLFAEVDTVMRGMSKV
TQTMVDLKTRKLGQLQIASQHAMSFGFMPRLIARFASDRPELNISFQSQYSSKVQEWVWNGLFEIGVCEMPLLYDTLTVY
PLYVETMLALHKDNPLARHEVLTPELLAGEPFIVMGQDHMTHRRLREAFQDAGVPLRTRVHSHLFKNLLSFVQEGMGVAL
LDRFMFDYDMQGDVITRPFRPTIRMDMCVITSKSRPMSQLGKEFLDLLLGELQHYSVEGRPLVPAERKRR

Sequences:

>Translated_310_residues
MKLRFRQLQAFHAIVETGTVTGAAGLLGISQPGVSNLLSQLEDQAGMALFERLHGRLLPTPEAELLFAEVDTVMRGMSKV
TQTMVDLKTRKLGQLQIASQHAMSFGFMPRLIARFASDRPELNISFQSQYSSKVQEWVWNGLFEIGVCEMPLLYDTLTVY
PLYVETMLALHKDNPLARHEVLTPELLAGEPFIVMGQDHMTHRRLREAFQDAGVPLRTRVHSHLFKNLLSFVQEGMGVAL
LDRFMFDYDMQGDVITRPFRPTIRMDMCVITSKSRPMSQLGKEFLDLLLGELQHYSVEGRPLVPAERKRR
>Mature_310_residues
MKLRFRQLQAFHAIVETGTVTGAAGLLGISQPGVSNLLSQLEDQAGMALFERLHGRLLPTPEAELLFAEVDTVMRGMSKV
TQTMVDLKTRKLGQLQIASQHAMSFGFMPRLIARFASDRPELNISFQSQYSSKVQEWVWNGLFEIGVCEMPLLYDTLTVY
PLYVETMLALHKDNPLARHEVLTPELLAGEPFIVMGQDHMTHRRLREAFQDAGVPLRTRVHSHLFKNLLSFVQEGMGVAL
LDRFMFDYDMQGDVITRPFRPTIRMDMCVITSKSRPMSQLGKEFLDLLLGELQHYSVEGRPLVPAERKRR

Specific function: Positive regulatory protein for the noc operon involved in nopaline catabolism and uptake [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789204, Length=284, Percent_Identity=29.2253521126761, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1788481, Length=300, Percent_Identity=26, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI145693105, Length=292, Percent_Identity=21.5753424657534, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI157672245, Length=229, Percent_Identity=22.707423580786, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790262, Length=258, Percent_Identity=25.5813953488372, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788296, Length=245, Percent_Identity=26.9387755102041, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787530, Length=248, Percent_Identity=24.1935483870968, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1789506, Length=222, Percent_Identity=22.5225225225225, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1790399, Length=241, Percent_Identity=24.4813278008299, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35261; Mature: 35261

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLRFRQLQAFHAIVETGTVTGAAGLLGISQPGVSNLLSQLEDQAGMALFERLHGRLLPT
CCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
PEAELLFAEVDTVMRGMSKVTQTMVDLKTRKLGQLQIASQHAMSFGFMPRLIARFASDRP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCC
ELNISFQSQYSSKVQEWVWNGLFEIGVCEMPLLYDTLTVYPLYVETMLALHKDNPLARHE
CEEEEHHHHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
VLTPELLAGEPFIVMGQDHMTHRRLREAFQDAGVPLRTRVHSHLFKNLLSFVQEGMGVAL
CCCHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHH
LDRFMFDYDMQGDVITRPFRPTIRMDMCVITSKSRPMSQLGKEFLDLLLGELQHYSVEGR
HHHHHHCCCCCCCEECCCCCCCHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCC
PLVPAERKRR
CCCCCHHCCC
>Mature Secondary Structure
MKLRFRQLQAFHAIVETGTVTGAAGLLGISQPGVSNLLSQLEDQAGMALFERLHGRLLPT
CCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
PEAELLFAEVDTVMRGMSKVTQTMVDLKTRKLGQLQIASQHAMSFGFMPRLIARFASDRP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCC
ELNISFQSQYSSKVQEWVWNGLFEIGVCEMPLLYDTLTVYPLYVETMLALHKDNPLARHE
CEEEEHHHHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
VLTPELLAGEPFIVMGQDHMTHRRLREAFQDAGVPLRTRVHSHLFKNLLSFVQEGMGVAL
CCCHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHH
LDRFMFDYDMQGDVITRPFRPTIRMDMCVITSKSRPMSQLGKEFLDLLLGELQHYSVEGR
HHHHHHCCCCCCCEECCCCCCCHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCC
PLVPAERKRR
CCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1799698; 11743193; 11743194 [H]