Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080191

Identifier: 99080191

GI number: 99080191

Start: 357102

End: 357494

Strand: Direct

Name: 99080191

Synonym: TM1040_0350

Alternate gene names: NA

Gene position: 357102-357494 (Clockwise)

Preceding gene: 99080190

Following gene: 99080192

Centisome position: 11.16

GC content: 59.54

Gene sequence:

>393_bases
ATGGCACTGCGCTTGGGATGTAAAAAGAGGCGCAGACTGTCGATGACTTCGCTCATCGATGTGATCTTTCTGCTGCTGTT
GTTCTTTATGCTCTCTTCGACGTTTTCGCGCTTTGGCAGTGTCGACCTCATGGCCGCCAACGCCGGATCGGGGCGTTCCG
ATGAGACGCGTCCAGTGTTTTTGAAACTCGCGCCCACGCAGATGTCGCTGAATGGTGAAGCACTCGCTCTTGAGGGGCTT
GGGATGCGCCTTGACGCCTTGCGGGCGCAACGGCAGGGGACGCCGCATCAGTTGTTGCTGAGCCTGTCCGGCGCGGTGAC
CTCACAGCGTTTGGTGGACGTGCTCGCGGTTTTGCGTCGCCAGCCGGATCTCGCCGTGACGGTGGTGGAGTAA

Upstream 100 bases:

>100_bases
CGGTGGAGCGTGACCGGGTGTTTGCCAATCACGCGTTGCGTCGGGTCTTTGCGCCCGACGCGCTCACCCCGGTGCAGTTG
AGCCCGAAAGAGGCCGCCTG

Downstream 100 bases:

>100_bases
CCCATGCCGATAGAACGACGCACGAAAAAGAGCCACCGCGAGCCGACGATTGCGCTCATCAACGTGGTGTTCCTGATGCT
GGTCTTCTTCATGGTGGCGG

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 129

Protein sequence:

>130_residues
MALRLGCKKRRRLSMTSLIDVIFLLLLFFMLSSTFSRFGSVDLMAANAGSGRSDETRPVFLKLAPTQMSLNGEALALEGL
GMRLDALRAQRQGTPHQLLLSLSGAVTSQRLVDVLAVLRRQPDLAVTVVE

Sequences:

>Translated_130_residues
MALRLGCKKRRRLSMTSLIDVIFLLLLFFMLSSTFSRFGSVDLMAANAGSGRSDETRPVFLKLAPTQMSLNGEALALEGL
GMRLDALRAQRQGTPHQLLLSLSGAVTSQRLVDVLAVLRRQPDLAVTVVE
>Mature_129_residues
ALRLGCKKRRRLSMTSLIDVIFLLLLFFMLSSTFSRFGSVDLMAANAGSGRSDETRPVFLKLAPTQMSLNGEALALEGLG
MRLDALRAQRQGTPHQLLLSLSGAVTSQRLVDVLAVLRRQPDLAVTVVE

Specific function: Unknown

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14215; Mature: 14084

Theoretical pI: Translated: 11.59; Mature: 11.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALRLGCKKRRRLSMTSLIDVIFLLLLFFMLSSTFSRFGSVDLMAANAGSGRSDETRPVF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEE
LKLAPTQMSLNGEALALEGLGMRLDALRAQRQGTPHQLLLSLSGAVTSQRLVDVLAVLRR
EEECCCEECCCCCEEEECCCCCHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHC
QPDLAVTVVE
CCCEEEEEEC
>Mature Secondary Structure 
ALRLGCKKRRRLSMTSLIDVIFLLLLFFMLSSTFSRFGSVDLMAANAGSGRSDETRPVF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEE
LKLAPTQMSLNGEALALEGLGMRLDALRAQRQGTPHQLLLSLSGAVTSQRLVDVLAVLRR
EEECCCEECCCCCEEEECCCCCHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHC
QPDLAVTVVE
CCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA