Click here to switch to the map view.

The map label for this gene is yqaA [H]

Identifier: 99080176

GI number: 99080176

Start: 339509

End: 339937

Strand: Reverse

Name: yqaA [H]

Synonym: TM1040_0335

Alternate gene names: 99080176

Gene position: 339937-339509 (Counterclockwise)

Preceding gene: 99080177

Following gene: 99080173

Centisome position: 10.62

GC content: 61.77

Gene sequence:

>429_bases
ATGATCGCCCTCCTTGGTCTGTTTTTCGCGGCGTTTCTGGCCGCGACTTTGATCCCTGCCCAATCCGAGGCGGTGCTTGT
CGGGCTGCTGCTGTCCGGGGGTCACTCTGCACTACTGCTGGTCATGACGGCCACGCTCGGCAATGTGCTTGGATCGGTGG
TGAACTGGGTTTTGGGCCGCTTTCTCACCGCCTATGCGGACCGGCGTTGGTTTCCCGTCTCCGAACAACAGCTCTCCAGA
GCCGCCGGATGGTACCGGCGCTGGGGCTATTGGAGCCTGCTTGGCAGCTGGTTGCCCATCGTCGGCGATCCGTTGACGCT
CGCGGCAGGCGTGATGAAAGAGCCCCTCTGGCGTTTCCTTTTGATTGTCACGCTCTCAAAGGGCGGCCGCTATGTGGTGC
TCGCCATGGCCACACAGGGGTTTCTCTGA

Upstream 100 bases:

>100_bases
CCGGCGGACCATCCCCACATGCGCCAATTTGGCACCACACCGCATCAACACGCGATCATCATCGACGATCTGCACCGTCA
CTGGCCAACGCAGGGATAGG

Downstream 100 bases:

>100_bases
GCCATTTCAGGAACTTGAGGCGCACGTATGGCCACCAGAAGCGTTCTCTCCACCATGCAAGAACCACCTCACACATGACA
ACAACCAGGCGTCAAAGCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MIALLGLFFAAFLAATLIPAQSEAVLVGLLLSGGHSALLLVMTATLGNVLGSVVNWVLGRFLTAYADRRWFPVSEQQLSR
AAGWYRRWGYWSLLGSWLPIVGDPLTLAAGVMKEPLWRFLLIVTLSKGGRYVVLAMATQGFL

Sequences:

>Translated_142_residues
MIALLGLFFAAFLAATLIPAQSEAVLVGLLLSGGHSALLLVMTATLGNVLGSVVNWVLGRFLTAYADRRWFPVSEQQLSR
AAGWYRRWGYWSLLGSWLPIVGDPLTLAAGVMKEPLWRFLLIVTLSKGGRYVVLAMATQGFL
>Mature_142_residues
MIALLGLFFAAFLAATLIPAQSEAVLVGLLLSGGHSALLLVMTATLGNVLGSVVNWVLGRFLTAYADRRWFPVSEQQLSR
AAGWYRRWGYWSLLGSWLPIVGDPLTLAAGVMKEPLWRFLLIVTLSKGGRYVVLAMATQGFL

Specific function: Unknown

COG id: COG1238

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0489 [H]

Homologues:

Organism=Escherichia coli, GI1789045, Length=142, Percent_Identity=44.3661971830986, Blast_Score=99, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 15482; Mature: 15482

Theoretical pI: Translated: 10.63; Mature: 10.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIALLGLFFAAFLAATLIPAQSEAVLVGLLLSGGHSALLLVMTATLGNVLGSVVNWVLGR
CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FLTAYADRRWFPVSEQQLSRAAGWYRRWGYWSLLGSWLPIVGDPLTLAAGVMKEPLWRFL
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LIVTLSKGGRYVVLAMATQGFL
HHHHCCCCCCEEEEEECCCCCC
>Mature Secondary Structure
MIALLGLFFAAFLAATLIPAQSEAVLVGLLLSGGHSALLLVMTATLGNVLGSVVNWVLGR
CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FLTAYADRRWFPVSEQQLSRAAGWYRRWGYWSLLGSWLPIVGDPLTLAAGVMKEPLWRFL
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LIVTLSKGGRYVVLAMATQGFL
HHHHCCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]