| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080162
Identifier: 99080162
GI number: 99080162
Start: 326224
End: 326781
Strand: Direct
Name: 99080162
Synonym: TM1040_0321
Alternate gene names: NA
Gene position: 326224-326781 (Clockwise)
Preceding gene: 99080161
Following gene: 99080164
Centisome position: 10.19
GC content: 61.47
Gene sequence:
>558_bases ATGCTGCGCGACACGCCCCTTTGTTCCTTCGGCTGGAAGGCACCTGATTTCACGCTGCGCGATCCCGAGGGTCGCCCCTA TACGATGTCCGATCATCTCGGCGAGAAGGGGCTGCTTGTGGCCTTTCTCTGCAACCACTGCCCCTATGTGCAGGCGGTTG CCGACCGGCTGGCAGAGGATACTGGTACTTTGTTGGACGAGGGCATTGGCGTGCTGGCGGTCATGTCGAACGACTATCAC GCGGTGCCGATGGACCATCCGGCCTATATGCAGCGGTTTGCGCGCGAAGTGGGCTGGCGTTTTCCCTATCTCGTTGATGA GGATCAGTCGGTTGGGCAGGCTTGGGGCGCGGTTTGCACGCCGGACTTCTTTGGCCTCAATGCCGCGGGCGCGTTGCAAT ATCGCGGTCGTCTGGACAACGCCCGTTTTGATGCGCCTGCAGGTCGCAACCGCGAGCTGGTCGCGGCCATGCGGCAGATC GCGATGACGGGTGAGGGGCCACAAGAACAGTTGTCGTCGATGGGATGTTCGATCAAATGGCGCAGCGCCAGAGGTTGA
Upstream 100 bases:
>100_bases GAGAAAACAGCCGTCGCTGCGGAATAACGCCCACGCGTTTTGCCCCCGGTCCCGCGCATCCGTGCGGGGCCACCATAAAT TTATGCAAGGATTATGCCGC
Downstream 100 bases:
>100_bases GGCCCGATCCCGCGACGCCCGGACCGTCGCTGTGATCTGATCCATTCGGGAAGCTGTTGCAGAACTCTGTGGGGGCCTCG CGTCGCTCAGCTCTCCTTGG
Product: redoxin
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 185; Mature: 185
Protein sequence:
>185_residues MLRDTPLCSFGWKAPDFTLRDPEGRPYTMSDHLGEKGLLVAFLCNHCPYVQAVADRLAEDTGTLLDEGIGVLAVMSNDYH AVPMDHPAYMQRFAREVGWRFPYLVDEDQSVGQAWGAVCTPDFFGLNAAGALQYRGRLDNARFDAPAGRNRELVAAMRQI AMTGEGPQEQLSSMGCSIKWRSARG
Sequences:
>Translated_185_residues MLRDTPLCSFGWKAPDFTLRDPEGRPYTMSDHLGEKGLLVAFLCNHCPYVQAVADRLAEDTGTLLDEGIGVLAVMSNDYH AVPMDHPAYMQRFAREVGWRFPYLVDEDQSVGQAWGAVCTPDFFGLNAAGALQYRGRLDNARFDAPAGRNRELVAAMRQI AMTGEGPQEQLSSMGCSIKWRSARG >Mature_185_residues MLRDTPLCSFGWKAPDFTLRDPEGRPYTMSDHLGEKGLLVAFLCNHCPYVQAVADRLAEDTGTLLDEGIGVLAVMSNDYH AVPMDHPAYMQRFAREVGWRFPYLVDEDQSVGQAWGAVCTPDFFGLNAAGALQYRGRLDNARFDAPAGRNRELVAAMRQI AMTGEGPQEQLSSMGCSIKWRSARG
Specific function: Unknown
COG id: COG0526
COG function: function code OC; Thiol-disulfide isomerase and thioredoxins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20475; Mature: 20475
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 7.0 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 7.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRDTPLCSFGWKAPDFTLRDPEGRPYTMSDHLGEKGLLVAFLCNHCPYVQAVADRLAED CCCCCCCCCCCCCCCCCEEECCCCCCEEHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHH TGTLLDEGIGVLAVMSNDYHAVPMDHPAYMQRFAREVGWRFPYLVDEDQSVGQAWGAVCT HHHHHHCCCCEEEEECCCCEECCCCCHHHHHHHHHHHCCCCCEEECCCCHHHHHCCCCCC PDFFGLNAAGALQYRGRLDNARFDAPAGRNRELVAAMRQIAMTGEGPQEQLSSMGCSIKW CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCEEE RSARG CCCCC >Mature Secondary Structure MLRDTPLCSFGWKAPDFTLRDPEGRPYTMSDHLGEKGLLVAFLCNHCPYVQAVADRLAED CCCCCCCCCCCCCCCCCEEECCCCCCEEHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHH TGTLLDEGIGVLAVMSNDYHAVPMDHPAYMQRFAREVGWRFPYLVDEDQSVGQAWGAVCT HHHHHHCCCCEEEEECCCCEECCCCCHHHHHHHHHHHCCCCCEEECCCCHHHHHCCCCCC PDFFGLNAAGALQYRGRLDNARFDAPAGRNRELVAAMRQIAMTGEGPQEQLSSMGCSIKW CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCEEE RSARG CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA