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The map label for this gene is secY [H]

Identifier: 99080116

GI number: 99080116

Start: 281717

End: 283081

Strand: Direct

Name: secY [H]

Synonym: TM1040_0275

Alternate gene names: 99080116

Gene position: 281717-283081 (Clockwise)

Preceding gene: 99080115

Following gene: 99080117

Centisome position: 8.8

GC content: 57.88

Gene sequence:

>1365_bases
ATGGTATCAGCAGCAGAACAAATGGCGGCGAACACCAGCTGGGCAGCGCTCGGCAAGGCCACGGATCTGCGCAACCGCAT
CCTGTTTACGATTGGACTTTTGATTGTCTATCGTTTGGGCACTTGGATTCCCGTTCCGGGGATCGACGCCGATGCATTGC
GCCAGTTCATGGACACCGCCGGGCAAGGCATTGGCGGCATGGTGTCGATGTTTACTGGGGGCGCTTTGGGCCGCATGGGT
ATTTTTGCCCTCGGCATCATGCCCTATATCTCGGCCTCCATTATCGTGCAGTTGCTGACCTCGATGGTGCCCGCGCTCGA
ACAGCTCAAGAAAGAGGGCGAGCAGGGCCGCAAGAAGATCAACCAATATACCCGTTACGGCACCGTCCTGCTGGCAACCG
CTCAGGCCTATGGCCTCGCAGCATCGCTGGAAGCCGGGGATATGGCGTTTGATCCGGGTCTCTATTTCCGCCTGTCGTGC
ATGATCACGCTGGTGGGCGGCACCATGTTCCTGATGTGGCTGGGTGAGCAGATCACCAACCGCGGCATCGGCAACGGTAT
CTCGCTGATCATCTTCGTCGGCATCATCGCCGAAATCCCCGCCGCCATTGTACAGTTCTTTGCCTCTGGCCGCTCTGGTG
CGATTTCTCCGGCCGTGATCATTGCTGTGATCGTGATGGTGGTTGCGGTGATCATGTTTGTGGTCTTCATGGAGCGTGCG
CTGCGCAAGATCCACATTCAGTATCCGCGTCGCCAGGTGGGTATGAAAGTCTATGACGGCGGCTCTTCGCACCTGCCTGT
CAAGGTCAACCCGGCGGGCGTGATCCCTGCGATCTTTGCCTCCTCGCTGCTCTTGCTGCCGACCACGATCTCCACCTTCA
GCCAGGGCTCTGCTTCGAGCCCGGTGATGAGCTGGCTCTTGGCCAACTTTGGCCCCGGTCAGCCGCTCTATCTGCTGTTC
TTTACGGCGATGATCGTGTTCTTTGCGTATTTCTACACCTTCAACGTCTCCTTCAAGCCGGATGACGTGGCGCAGAACCT
GAAGAACCAGAACGGCTTTGTGCCCGGCATCCGCCCCGGCAAGAAGACCGCGGAATACATCGAATATGTGGTGAACCGCG
TCCTCGTCCTCGGCTCTGCCTATCTCGCGCTGGTGTGCTTGCTGCCTGAGATTTTGCGCAACAATTTCGCAATTCCGGTT
TACTTTGGCGGCACCTCGGTTCTGATTGTGGTCTCTGTGACCATGGACACGATCCAGCAGGTACAGAGCCATCTTCTCGC
GCATCAGTACGAAGGCCTCATTGAGAAGAGCCAGCTGCGCGGTCGGAACAAGAAACGCACCAAACGGGGACCGTCTCGTC
GATGA

Upstream 100 bases:

>100_bases
GCGGCGCGTAAGCCGCTTACATAAGTCATCAGTTTTCCCATACGCCGTCCGAGCCGGAAAACGGTTCCGGGCGGCGTTTT
CGCAAGAAGAGACTCCTTTT

Downstream 100 bases:

>100_bases
CCAATATTATTCTTCTGGGCCCGCCCGGCGCGGGCAAGGGAACGCAGGCCAGCCACCTGGTCAAGACCCGCAACATGACC
CAGCTCTCCACCGGGGACAT

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 454; Mature: 454

Protein sequence:

>454_residues
MVSAAEQMAANTSWAALGKATDLRNRILFTIGLLIVYRLGTWIPVPGIDADALRQFMDTAGQGIGGMVSMFTGGALGRMG
IFALGIMPYISASIIVQLLTSMVPALEQLKKEGEQGRKKINQYTRYGTVLLATAQAYGLAASLEAGDMAFDPGLYFRLSC
MITLVGGTMFLMWLGEQITNRGIGNGISLIIFVGIIAEIPAAIVQFFASGRSGAISPAVIIAVIVMVVAVIMFVVFMERA
LRKIHIQYPRRQVGMKVYDGGSSHLPVKVNPAGVIPAIFASSLLLLPTTISTFSQGSASSPVMSWLLANFGPGQPLYLLF
FTAMIVFFAYFYTFNVSFKPDDVAQNLKNQNGFVPGIRPGKKTAEYIEYVVNRVLVLGSAYLALVCLLPEILRNNFAIPV
YFGGTSVLIVVSVTMDTIQQVQSHLLAHQYEGLIEKSQLRGRNKKRTKRGPSRR

Sequences:

>Translated_454_residues
MVSAAEQMAANTSWAALGKATDLRNRILFTIGLLIVYRLGTWIPVPGIDADALRQFMDTAGQGIGGMVSMFTGGALGRMG
IFALGIMPYISASIIVQLLTSMVPALEQLKKEGEQGRKKINQYTRYGTVLLATAQAYGLAASLEAGDMAFDPGLYFRLSC
MITLVGGTMFLMWLGEQITNRGIGNGISLIIFVGIIAEIPAAIVQFFASGRSGAISPAVIIAVIVMVVAVIMFVVFMERA
LRKIHIQYPRRQVGMKVYDGGSSHLPVKVNPAGVIPAIFASSLLLLPTTISTFSQGSASSPVMSWLLANFGPGQPLYLLF
FTAMIVFFAYFYTFNVSFKPDDVAQNLKNQNGFVPGIRPGKKTAEYIEYVVNRVLVLGSAYLALVCLLPEILRNNFAIPV
YFGGTSVLIVVSVTMDTIQQVQSHLLAHQYEGLIEKSQLRGRNKKRTKRGPSRR
>Mature_454_residues
MVSAAEQMAANTSWAALGKATDLRNRILFTIGLLIVYRLGTWIPVPGIDADALRQFMDTAGQGIGGMVSMFTGGALGRMG
IFALGIMPYISASIIVQLLTSMVPALEQLKKEGEQGRKKINQYTRYGTVLLATAQAYGLAASLEAGDMAFDPGLYFRLSC
MITLVGGTMFLMWLGEQITNRGIGNGISLIIFVGIIAEIPAAIVQFFASGRSGAISPAVIIAVIVMVVAVIMFVVFMERA
LRKIHIQYPRRQVGMKVYDGGSSHLPVKVNPAGVIPAIFASSLLLLPTTISTFSQGSASSPVMSWLLANFGPGQPLYLLF
FTAMIVFFAYFYTFNVSFKPDDVAQNLKNQNGFVPGIRPGKKTAEYIEYVVNRVLVLGSAYLALVCLLPEILRNNFAIPV
YFGGTSVLIVVSVTMDTIQQVQSHLLAHQYEGLIEKSQLRGRNKKRTKRGPSRR

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=434, Percent_Identity=50, Blast_Score=385, Evalue=1e-108,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 49344; Mature: 49344

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSAAEQMAANTSWAALGKATDLRNRILFTIGLLIVYRLGTWIPVPGIDADALRQFMDTA
CCCCHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
GQGIGGMVSMFTGGALGRMGIFALGIMPYISASIIVQLLTSMVPALEQLKKEGEQGRKKI
CCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NQYTRYGTVLLATAQAYGLAASLEAGDMAFDPGLYFRLSCMITLVGGTMFLMWLGEQITN
HHHHHHHHHHEEHHHHHCCHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
RGIGNGISLIIFVGIIAEIPAAIVQFFASGRSGAISPAVIIAVIVMVVAVIMFVVFMERA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LRKIHIQYPRRQVGMKVYDGGSSHLPVKVNPAGVIPAIFASSLLLLPTTISTFSQGSASS
HHHHHHHCCHHHCCEEEECCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH
PVMSWLLANFGPGQPLYLLFFTAMIVFFAYFYTFNVSFKPDDVAQNLKNQNGFVPGIRPG
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCC
KKTAEYIEYVVNRVLVLGSAYLALVCLLPEILRNNFAIPVYFGGTSVLIVVSVTMDTIQQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEEEHHHHHHHH
VQSHLLAHQYEGLIEKSQLRGRNKKRTKRGPSRR
HHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCC
>Mature Secondary Structure
MVSAAEQMAANTSWAALGKATDLRNRILFTIGLLIVYRLGTWIPVPGIDADALRQFMDTA
CCCCHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
GQGIGGMVSMFTGGALGRMGIFALGIMPYISASIIVQLLTSMVPALEQLKKEGEQGRKKI
CCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NQYTRYGTVLLATAQAYGLAASLEAGDMAFDPGLYFRLSCMITLVGGTMFLMWLGEQITN
HHHHHHHHHHEEHHHHHCCHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
RGIGNGISLIIFVGIIAEIPAAIVQFFASGRSGAISPAVIIAVIVMVVAVIMFVVFMERA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LRKIHIQYPRRQVGMKVYDGGSSHLPVKVNPAGVIPAIFASSLLLLPTTISTFSQGSASS
HHHHHHHCCHHHCCEEEECCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH
PVMSWLLANFGPGQPLYLLFFTAMIVFFAYFYTFNVSFKPDDVAQNLKNQNGFVPGIRPG
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCC
KKTAEYIEYVVNRVLVLGSAYLALVCLLPEILRNNFAIPVYFGGTSVLIVVSVTMDTIQQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEEEHHHHHHHH
VQSHLLAHQYEGLIEKSQLRGRNKKRTKRGPSRR
HHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA