| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080056
Identifier: 99080056
GI number: 99080056
Start: 231109
End: 231594
Strand: Direct
Name: 99080056
Synonym: TM1040_0215
Alternate gene names: NA
Gene position: 231109-231594 (Clockwise)
Preceding gene: 99080054
Following gene: 99080059
Centisome position: 7.22
GC content: 61.52
Gene sequence:
>486_bases ATGAAAGACGCCATTTCAGGAAGAAGCCAAAGCCCGGCGGGCGCACGCCTTCTGCATCGCCTGGGTGCAAAAGCTGCTGT GATCGCATGTGGTCTGAGCGTGGCGGGCTGTGCCGCGGTAGAAAGCGGCCCTGCTGTGCCAGCCAAAAGCGGCAGCACCG TCTTTGAAGCGCGCCAGTCGCTTGCGTTTTGTGCGCCGCAAGGGCCCAAAGGCGCCAAAGCGGCAGTGACCTCGAGCTAC ATCGCCTCGATGCTGTTTCTGGGGATTTTGCCCGGCGCCGTTATTGCAGCCGCTGGCGAGGAGCATACCCGGTCACAAGG TGCCGTGAATGCGGTGGATGACTGCCTGAAAGATCAGGGGTATGAGCGGCGTGAACTGACTGCCGAGGAAACCACGGCAA TCAAGCAACGGGATCGCTACGCGCGCGAGCAGCTTCTCTCGCATCTGATCGGCGGCGGAACATTGGCCGACTATACGGGC CCCTAA
Upstream 100 bases:
>100_bases GCAGGTGCATTTTCCCGCTCCTTGGCTCAGAGCCATTGCAGCGATTGCGACATTCAAAGAGGCGGTGCCGCCTCCAATAG ACTTTGAGAAGGACAGCGTG
Downstream 100 bases:
>100_bases GTCGGACGATCTGCGCCTGACGCGCCTCGTTACGATACCACAATCCGACAACAAAAAACGGGCCCCGCAAGGGACCCGTT CTCAGCATTCAGTACCCAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 161; Mature: 161
Protein sequence:
>161_residues MKDAISGRSQSPAGARLLHRLGAKAAVIACGLSVAGCAAVESGPAVPAKSGSTVFEARQSLAFCAPQGPKGAKAAVTSSY IASMLFLGILPGAVIAAAGEEHTRSQGAVNAVDDCLKDQGYERRELTAEETTAIKQRDRYAREQLLSHLIGGGTLADYTG P
Sequences:
>Translated_161_residues MKDAISGRSQSPAGARLLHRLGAKAAVIACGLSVAGCAAVESGPAVPAKSGSTVFEARQSLAFCAPQGPKGAKAAVTSSY IASMLFLGILPGAVIAAAGEEHTRSQGAVNAVDDCLKDQGYERRELTAEETTAIKQRDRYAREQLLSHLIGGGTLADYTG P >Mature_161_residues MKDAISGRSQSPAGARLLHRLGAKAAVIACGLSVAGCAAVESGPAVPAKSGSTVFEARQSLAFCAPQGPKGAKAAVTSSY IASMLFLGILPGAVIAAAGEEHTRSQGAVNAVDDCLKDQGYERRELTAEETTAIKQRDRYAREQLLSHLIGGGTLADYTG P
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16499; Mature: 16499
Theoretical pI: Translated: 8.33; Mature: 8.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDAISGRSQSPAGARLLHRLGAKAAVIACGLSVAGCAAVESGPAVPAKSGSTVFEARQS CCCCCCCCCCCCHHHHHHHHHCCHHHHHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHH LAFCAPQGPKGAKAAVTSSYIASMLFLGILPGAVIAAAGEEHTRSQGAVNAVDDCLKDQG HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCC YERRELTAEETTAIKQRDRYAREQLLSHLIGGGTLADYTGP CCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MKDAISGRSQSPAGARLLHRLGAKAAVIACGLSVAGCAAVESGPAVPAKSGSTVFEARQS CCCCCCCCCCCCHHHHHHHHHCCHHHHHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHH LAFCAPQGPKGAKAAVTSSYIASMLFLGILPGAVIAAAGEEHTRSQGAVNAVDDCLKDQG HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCC YERRELTAEETTAIKQRDRYAREQLLSHLIGGGTLADYTGP CCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA