Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080025

Identifier: 99080025

GI number: 99080025

Start: 202858

End: 203727

Strand: Reverse

Name: 99080025

Synonym: TM1040_0184

Alternate gene names: NA

Gene position: 203727-202858 (Counterclockwise)

Preceding gene: 99080030

Following gene: 99080023

Centisome position: 6.36

GC content: 57.93

Gene sequence:

>870_bases
ATGCATTATCGCGCGCTGGGGGATTTTCTTCAGACAGGCAAACCCATTCTTTCCAAAGGGCCGGTCGCGCTGATCTTTAT
CGAGGACGAGGTGGAAATCGGCACGACCCTGCGTCACCACCTGAACTGCGGCTTCAAGGCCGTGGTCGCGCTGATGCCGG
ACGCCTTCGACATCCCCGAAGACGTCGCGCCCCTGATCCATCGCGTGCCCTATGACTGTAGCAGCGCAAATTCGGTGACC
ATGGCCATGAACCAGATCATCGCGGCCGCCACGCCGGGATGCTGGCTCTACTACTGCTACAACAGCGAATACCTCTTCTA
CCCGTTCTGCGAGACCCGGACCGTCAGCGAAATGTTGACATTCCACACCGAAGAGCGCCGCAATGCGATGCTGACATATG
TGATCGACCTCTACGCAGGCGACCTCGCGGCCCACCCCGGTGCGGTCTCAATCGAAAACGCGCATCTGGACAAGTCCGGC
TATTACGCGCAGGGGCGCAAAGATCCCGAAACAGGGCATCCCCGGGAACGCCAGCTTGACTTTTTTGGTGGCATCCGCTG
GCGGCACGAGGAGCACATCCCCGAAACAAGCCGTAAAATCGACCGCATTGCGCTGTTTCAGGCCAAACCTGATCTGACGC
TACAATCGGATCACACCTTCAACGATCAGGAATACAACACCTACTCTTGTCCGTGGCATCACAATCTGACGGCCGCGATC
TGTTCCTTCCGCGCCGCCAAAGCACTGAAGCGCAACCCCGGATCGACCTTCGACATTCAGAGCTTCAAATGGCACAACTC
CGCCCCGTTTGAGTGGCACTCCCGTCAGCTTCTTGATCTTGGGTTGATGGAGCCGGGACAATGGTTCTGA

Upstream 100 bases:

>100_bases
TTTAGGCCGCTTGCAATGGCAGGGCAATTACCCGATTTTGTCGTCAAAGACCAGAAGGCGCTCGGCAGCGAAGCCAGAGC
AGAGCATAAGGACAGGCCCG

Downstream 100 bases:

>100_bases
GCCTGCGCGGTCCGGCGCATTGCTCCTTCACCTTTTCCAAAACACCTCGTGGGTGAGGTTCAAAAGCACCGAGGAGGCAG
AGCCCCTTTTTTTCAGGTCT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MHYRALGDFLQTGKPILSKGPVALIFIEDEVEIGTTLRHHLNCGFKAVVALMPDAFDIPEDVAPLIHRVPYDCSSANSVT
MAMNQIIAAATPGCWLYYCYNSEYLFYPFCETRTVSEMLTFHTEERRNAMLTYVIDLYAGDLAAHPGAVSIENAHLDKSG
YYAQGRKDPETGHPRERQLDFFGGIRWRHEEHIPETSRKIDRIALFQAKPDLTLQSDHTFNDQEYNTYSCPWHHNLTAAI
CSFRAAKALKRNPGSTFDIQSFKWHNSAPFEWHSRQLLDLGLMEPGQWF

Sequences:

>Translated_289_residues
MHYRALGDFLQTGKPILSKGPVALIFIEDEVEIGTTLRHHLNCGFKAVVALMPDAFDIPEDVAPLIHRVPYDCSSANSVT
MAMNQIIAAATPGCWLYYCYNSEYLFYPFCETRTVSEMLTFHTEERRNAMLTYVIDLYAGDLAAHPGAVSIENAHLDKSG
YYAQGRKDPETGHPRERQLDFFGGIRWRHEEHIPETSRKIDRIALFQAKPDLTLQSDHTFNDQEYNTYSCPWHHNLTAAI
CSFRAAKALKRNPGSTFDIQSFKWHNSAPFEWHSRQLLDLGLMEPGQWF
>Mature_289_residues
MHYRALGDFLQTGKPILSKGPVALIFIEDEVEIGTTLRHHLNCGFKAVVALMPDAFDIPEDVAPLIHRVPYDCSSANSVT
MAMNQIIAAATPGCWLYYCYNSEYLFYPFCETRTVSEMLTFHTEERRNAMLTYVIDLYAGDLAAHPGAVSIENAHLDKSG
YYAQGRKDPETGHPRERQLDFFGGIRWRHEEHIPETSRKIDRIALFQAKPDLTLQSDHTFNDQEYNTYSCPWHHNLTAAI
CSFRAAKALKRNPGSTFDIQSFKWHNSAPFEWHSRQLLDLGLMEPGQWF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33062; Mature: 33062

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHYRALGDFLQTGKPILSKGPVALIFIEDEVEIGTTLRHHLNCGFKAVVALMPDAFDIPE
CCHHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCH
DVAPLIHRVPYDCSSANSVTMAMNQIIAAATPGCWLYYCYNSEYLFYPFCETRTVSEMLT
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCEEEEECCCCHHHHHHHH
FHTEERRNAMLTYVIDLYAGDLAAHPGAVSIENAHLDKSGYYAQGRKDPETGHPRERQLD
HHHHHHHCEEEEEEEEHHHCHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH
FFGGIRWRHEEHIPETSRKIDRIALFQAKPDLTLQSDHTFNDQEYNTYSCPWHHNLTAAI
HHCCEEECCHHCCCHHHHHHHHEEEEECCCCCEEECCCCCCCCCCCEEECCCCCCHHHHH
CSFRAAKALKRNPGSTFDIQSFKWHNSAPFEWHSRQLLDLGLMEPGQWF
HHHHHHHHHHCCCCCEEECCCEECCCCCCCCCCCHHHHHHCCCCCCCCC
>Mature Secondary Structure
MHYRALGDFLQTGKPILSKGPVALIFIEDEVEIGTTLRHHLNCGFKAVVALMPDAFDIPE
CCHHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCH
DVAPLIHRVPYDCSSANSVTMAMNQIIAAATPGCWLYYCYNSEYLFYPFCETRTVSEMLT
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCEEEEECCCCHHHHHHHH
FHTEERRNAMLTYVIDLYAGDLAAHPGAVSIENAHLDKSGYYAQGRKDPETGHPRERQLD
HHHHHHHCEEEEEEEEHHHCHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH
FFGGIRWRHEEHIPETSRKIDRIALFQAKPDLTLQSDHTFNDQEYNTYSCPWHHNLTAAI
HHCCEEECCHHCCCHHHHHHHHEEEEECCCCCEEECCCCCCCCCCCEEECCCCCCHHHHH
CSFRAAKALKRNPGSTFDIQSFKWHNSAPFEWHSRQLLDLGLMEPGQWF
HHHHHHHHHHCCCCCEEECCCEECCCCCCCCCCCHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA