| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is tauZ [H]
Identifier: 99079994
GI number: 99079994
Start: 167639
End: 168676
Strand: Reverse
Name: tauZ [H]
Synonym: TM1040_0153
Alternate gene names: 99079994
Gene position: 168676-167639 (Counterclockwise)
Preceding gene: 99079995
Following gene: 99079993
Centisome position: 5.27
GC content: 61.95
Gene sequence:
>1038_bases GTGCCTGAAACCTCCCCGTCCCCTCGCCTGCCCCTCTCGATTGCGCGCCTGCGCAGCAGGGCAAAGGTCTTGTTTCCGGG CGTTGCCGTCTCTTTTATCGTTGCCGCCACGGCGCAGTTTTTGGCCGAACACTACGCAACGCCTGCAATGCTTATGGCGC TGCTCCTCGGGATTGCCGTCAGTTTTCTGGGCGAAGAGGGGCGCACGGTGCCGGGAGTCGCGTTTTCTGCGCGAACCCTC CTGCGCCTCGGGGTCGCGCTTTTGGGCGTGCGGGTCTCGATGATGGTGCTCGCCGGACTGGGACTGCCCTTGATCTTTCT CACCGCGGGCGGCGTAGTCGCGACCATCTTCTTTGGCCTCTGGGTTGCGCGCTTCTTCGGTCAGGAGTGGCGGTTTGCAC TCCTGACGGCGGGCTCGGTTGCGATCTGTGGTGCCTCTGCGGCAATGGCAATTGCTGCGATCCTACCGCGCGATAAATCC TCGGAGCAGCGGCTGATTTTCACCGTGATGGGGGTCACAGTCCTGTCGACCATCGCCATGATCCTCTATCCGATCCTTGC GGGCAGCCTGCAGTTTGACCACATTCAGGCCGGGGTCTTCCTCGGCGGGACCATTCATGACGTAGCCCAAGTGGTCGGGG CCGGTTTTTCCATCTCGGAGGAGACCGGAGACACCGCAACTTTGGTAAAACTGATCCGCGTCTCCATGCTGGCGCCTGTG GTGCTTGTGGCCTCGCTCTTCATCCGCGCCCGTATCGAGACCTCCGCCGAAGGGCGCCAACCTCCGCTCCTGCCGGGATT TGTCATCGGCTTTATCGCGCTCGCCGCACTCAATTCGCTGGCGCTGATCCCGCCTGTTGTTGCAGATTTTCTAAGCGCCT GTTCGCGGTGGCTCTTGCTGATCGCGATTGCCGCCGTCGGCATGAAAAGCAACCTCAAACAGGTGCTCTCGGTGGGCGGC GCAGCCATCGGGCTCTTGGTGACCGAAACGGTATTCATCGCCGGGCTGATCCTTCTGGGCATCCTGTTGCTGACCTGA
Upstream 100 bases:
>100_bases TGCAGGGACATTGGGCGCTATGGTCCTGTCACGGCGCGCAGCAGGGCCTGGATCGCCTCCGCACCATCTGTCCCTGACCA CCCAAGCTGATGAGGTCGCC
Downstream 100 bases:
>100_bases TCAGATTTTTTGCAAAAAATTGCACTCCCCTGTCACAGATCATCCCCCTCGTGCGTCCTGTTGTCAGTCCCCAAGACAGA AAAGGAACTGGACCATGACA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 345; Mature: 344
Protein sequence:
>345_residues MPETSPSPRLPLSIARLRSRAKVLFPGVAVSFIVAATAQFLAEHYATPAMLMALLLGIAVSFLGEEGRTVPGVAFSARTL LRLGVALLGVRVSMMVLAGLGLPLIFLTAGGVVATIFFGLWVARFFGQEWRFALLTAGSVAICGASAAMAIAAILPRDKS SEQRLIFTVMGVTVLSTIAMILYPILAGSLQFDHIQAGVFLGGTIHDVAQVVGAGFSISEETGDTATLVKLIRVSMLAPV VLVASLFIRARIETSAEGRQPPLLPGFVIGFIALAALNSLALIPPVVADFLSACSRWLLLIAIAAVGMKSNLKQVLSVGG AAIGLLVTETVFIAGLILLGILLLT
Sequences:
>Translated_345_residues MPETSPSPRLPLSIARLRSRAKVLFPGVAVSFIVAATAQFLAEHYATPAMLMALLLGIAVSFLGEEGRTVPGVAFSARTL LRLGVALLGVRVSMMVLAGLGLPLIFLTAGGVVATIFFGLWVARFFGQEWRFALLTAGSVAICGASAAMAIAAILPRDKS SEQRLIFTVMGVTVLSTIAMILYPILAGSLQFDHIQAGVFLGGTIHDVAQVVGAGFSISEETGDTATLVKLIRVSMLAPV VLVASLFIRARIETSAEGRQPPLLPGFVIGFIALAALNSLALIPPVVADFLSACSRWLLLIAIAAVGMKSNLKQVLSVGG AAIGLLVTETVFIAGLILLGILLLT >Mature_344_residues PETSPSPRLPLSIARLRSRAKVLFPGVAVSFIVAATAQFLAEHYATPAMLMALLLGIAVSFLGEEGRTVPGVAFSARTLL RLGVALLGVRVSMMVLAGLGLPLIFLTAGGVVATIFFGLWVARFFGQEWRFALLTAGSVAICGASAAMAIAAILPRDKSS EQRLIFTVMGVTVLSTIAMILYPILAGSLQFDHIQAGVFLGGTIHDVAQVVGAGFSISEETGDTATLVKLIRVSMLAPVV LVASLFIRARIETSAEGRQPPLLPGFVIGFIALAALNSLALIPPVVADFLSACSRWLLLIAIAAVGMKSNLKQVLSVGGA AIGLLVTETVFIAGLILLGILLLT
Specific function: Unknown
COG id: COG2855
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0324 family [H]
Homologues:
Organism=Escherichia coli, GI1788482, Length=251, Percent_Identity=29.8804780876494, Blast_Score=105, Evalue=5e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018383 [H]
Pfam domain/function: PF03601 Cons_hypoth698 [H]
EC number: NA
Molecular weight: Translated: 35944; Mature: 35813
Theoretical pI: Translated: 10.44; Mature: 10.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPETSPSPRLPLSIARLRSRAKVLFPGVAVSFIVAATAQFLAEHYATPAMLMALLLGIAV CCCCCCCCCCCHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH SFLGEEGRTVPGVAFSARTLLRLGVALLGVRVSMMVLAGLGLPLIFLTAGGVVATIFFGL HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHH WVARFFGQEWRFALLTAGSVAICGASAAMAIAAILPRDKSSEQRLIFTVMGVTVLSTIAM HHHHHHCCCHHHHEEECCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH ILYPILAGSLQFDHIQAGVFLGGTIHDVAQVVGAGFSISEETGDTATLVKLIRVSMLAPV HHHHHHHCCCCHHHHHHCCEECCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH VLVASLFIRARIETSAEGRQPPLLPGFVIGFIALAALNSLALIPPVVADFLSACSRWLLL HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IAIAAVGMKSNLKQVLSVGGAAIGLLVTETVFIAGLILLGILLLT HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure PETSPSPRLPLSIARLRSRAKVLFPGVAVSFIVAATAQFLAEHYATPAMLMALLLGIAV CCCCCCCCCCHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH SFLGEEGRTVPGVAFSARTLLRLGVALLGVRVSMMVLAGLGLPLIFLTAGGVVATIFFGL HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHH WVARFFGQEWRFALLTAGSVAICGASAAMAIAAILPRDKSSEQRLIFTVMGVTVLSTIAM HHHHHHCCCHHHHEEECCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH ILYPILAGSLQFDHIQAGVFLGGTIHDVAQVVGAGFSISEETGDTATLVKLIRVSMLAPV HHHHHHHCCCCHHHHHHCCEECCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH VLVASLFIRARIETSAEGRQPPLLPGFVIGFIALAALNSLALIPPVVADFLSACSRWLLL HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IAIAAVGMKSNLKQVLSVGGAAIGLLVTETVFIAGLILLGILLLT HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA