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The map label for this gene is fecI [C]

Identifier: 99079992

GI number: 99079992

Start: 166208

End: 167086

Strand: Reverse

Name: fecI [C]

Synonym: TM1040_0151

Alternate gene names: 99079992

Gene position: 167086-166208 (Counterclockwise)

Preceding gene: 99079993

Following gene: 99079990

Centisome position: 5.22

GC content: 63.14

Gene sequence:

>879_bases
GTGAACCACGGCACAGAGAATACCGGAACCGATGCGTTCCTTTCGGTGCGGCCGCGTCTTTTCGCGGTCGCCTATCGCAT
GTTGGGCAGTGTCGCCGATGCAGAAGACATCCTGCAGGACGCGTATTTGCGCTGGCAATCGGCACCACGAGGCGAGGTGC
GCGACCCAACCGGCTATCTCGTGCGGGTGGTCACACGGCTCTGTCTCGACCAGTTGAAATCGGCGCGTGTCAAACGCGAG
ACTTACACGGGGGCCTGGCTGCCCGAACCGCTGCTGACCGAAGATCCCGCAGAGCTGATCGATCATGATGTCTCGGTGGC
GCTTTTGCTGGCGCTTGAACGTCTGACCCCGCTCGAACGGGCCGCGTTCTTGCTGCATGACGTCTTTGGCAACAGCCATG
ACGAGGTAGCGAGTGCCCTCGACCGCAGCCCATCTGCGTGCCGCCAACTGGTATCGCGCGCAAGACGTCATGTGCAATCC
GAACGCCCGCGCAGCCAGGTTGCCCCCGAAGAGAGCCGGGCCCTGACCGAGGCCTTCTTTCGTGCCTCAAAGACCGGCGA
CATGGCGGCGTTGACGCAGCTTCTGGCGCAGGATGTGGAATTGGTCAGTGACGGGGGCGGCAAGGCCATGGCGGCGCTCA
ACCCGATTTACGGACGCGACAAGGTGATGCGCCTTGCCGAAGGGCTTGCACGCAAATACGGCGCACATCTGCCGCCGCGC
TGGCGGTTTGCGATGCTGAACGGCCTGCCCGCGATCCTCAGCCAAGAGCCAGAAGGGCTGGTTCAAGCGACCGCACTGGA
AATCCGCGACGGGCGGATCGCCAAGGTCTATGTGATCCGCAACCCAGAAAAGACCGCGCATCTGGCCGCCGTGCTGTAA

Upstream 100 bases:

>100_bases
AGGTCGCACTGACGCTCTTGATTGGGGCGATCAATGCCTGGAACCGCATTGCAATTGGTTTTCGCACCCCCCACCCTGCC
GCCAAGGAGGCCTCTGCTGC

Downstream 100 bases:

>100_bases
TCAGATGCGTCCCGGGCGGCGCTCCCGGCAAAACTCATCCGCAAAACAAAACAGCCCCGGAAGAACCGGGGCTGCTGCAA
TCAAAAACTGACCAGTGTCG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma Factor SigJ; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma Factor; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; Sigma-; ECF Subfamily RNA Polymerase Sigma Factor; ECF-Sigma Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor; ECF Family RNA Polymerase Sigma Factor; Sigma-70 Region 2 Domain-Containing Protein; Sigma Factor Sigma; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma Factor Sigma-70 Family Protein; RNA Polymerase; RNA Polymerase ECF-Type Sigma Factor; AlteRNAtive RNA Polymerase Sigma Factor SigJ; Sigma-70 Family RNA Polymerase Sigma Factor; Sigma-70 Factor; RNA Polymerase Sigma Subunit; AlteRNAtive RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Factor Protein; ECF-Family Protein RNA Polymerase Sigma Factor; RNA Polymerase Sigma Subunit ECF Family; RNA Polymerase Sigma-24 Subunit; ECF Sigma Factor; RNA Polymerase Sigma-70 Factor Family; ECF-Type Sigma Factor; RNA Polymerase Sigma-70 ECF Type; ECF Subfamily RNA Polymerase Sigma-; RNA Polymerase Sigma-70 Factor Protein; DNA-Directed RNA Polymeracialized Sigma Subunit

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MNHGTENTGTDAFLSVRPRLFAVAYRMLGSVADAEDILQDAYLRWQSAPRGEVRDPTGYLVRVVTRLCLDQLKSARVKRE
TYTGAWLPEPLLTEDPAELIDHDVSVALLLALERLTPLERAAFLLHDVFGNSHDEVASALDRSPSACRQLVSRARRHVQS
ERPRSQVAPEESRALTEAFFRASKTGDMAALTQLLAQDVELVSDGGGKAMAALNPIYGRDKVMRLAEGLARKYGAHLPPR
WRFAMLNGLPAILSQEPEGLVQATALEIRDGRIAKVYVIRNPEKTAHLAAVL

Sequences:

>Translated_292_residues
MNHGTENTGTDAFLSVRPRLFAVAYRMLGSVADAEDILQDAYLRWQSAPRGEVRDPTGYLVRVVTRLCLDQLKSARVKRE
TYTGAWLPEPLLTEDPAELIDHDVSVALLLALERLTPLERAAFLLHDVFGNSHDEVASALDRSPSACRQLVSRARRHVQS
ERPRSQVAPEESRALTEAFFRASKTGDMAALTQLLAQDVELVSDGGGKAMAALNPIYGRDKVMRLAEGLARKYGAHLPPR
WRFAMLNGLPAILSQEPEGLVQATALEIRDGRIAKVYVIRNPEKTAHLAAVL
>Mature_292_residues
MNHGTENTGTDAFLSVRPRLFAVAYRMLGSVADAEDILQDAYLRWQSAPRGEVRDPTGYLVRVVTRLCLDQLKSARVKRE
TYTGAWLPEPLLTEDPAELIDHDVSVALLLALERLTPLERAAFLLHDVFGNSHDEVASALDRSPSACRQLVSRARRHVQS
ERPRSQVAPEESRALTEAFFRASKTGDMAALTQLLAQDVELVSDGGGKAMAALNPIYGRDKVMRLAEGLARKYGAHLPPR
WRFAMLNGLPAILSQEPEGLVQATALEIRDGRIAKVYVIRNPEKTAHLAAVL

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32253; Mature: 32253

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS00101 HEXAPEP_TRANSFERASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHGTENTGTDAFLSVRPRLFAVAYRMLGSVADAEDILQDAYLRWQSAPRGEVRDPTGYL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHH
VRVVTRLCLDQLKSARVKRETYTGAWLPEPLLTEDPAELIDHDVSVALLLALERLTPLER
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHCHHHH
AAFLLHDVFGNSHDEVASALDRSPSACRQLVSRARRHVQSERPRSQVAPEESRALTEAFF
HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHH
RASKTGDMAALTQLLAQDVELVSDGGGKAMAALNPIYGRDKVMRLAEGLARKYGAHLPPR
HHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCH
WRFAMLNGLPAILSQEPEGLVQATALEIRDGRIAKVYVIRNPEKTAHLAAVL
HHHHHHHCCHHHHCCCCCHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHCC
>Mature Secondary Structure
MNHGTENTGTDAFLSVRPRLFAVAYRMLGSVADAEDILQDAYLRWQSAPRGEVRDPTGYL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHH
VRVVTRLCLDQLKSARVKRETYTGAWLPEPLLTEDPAELIDHDVSVALLLALERLTPLER
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHCHHHH
AAFLLHDVFGNSHDEVASALDRSPSACRQLVSRARRHVQSERPRSQVAPEESRALTEAFF
HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHH
RASKTGDMAALTQLLAQDVELVSDGGGKAMAALNPIYGRDKVMRLAEGLARKYGAHLPPR
HHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCH
WRFAMLNGLPAILSQEPEGLVQATALEIRDGRIAKVYVIRNPEKTAHLAAVL
HHHHHHHCCHHHHCCCCCHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA