Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is 99079951

Identifier: 99079951

GI number: 99079951

Start: 116273

End: 116500

Strand: Reverse

Name: 99079951

Synonym: TM1040_0110

Alternate gene names: NA

Gene position: 116500-116273 (Counterclockwise)

Preceding gene: 99079952

Following gene: 99079950

Centisome position: 3.64

GC content: 59.65

Gene sequence:

>228_bases
ATGGCGACCTGTCTGCTCTATAATCACTCTGAAAGCCGCCCCGCCCGGTTTTACCGGATCGAGTTGGCGATGAACCTTTT
TGATGAGGTGTCCCTCCTGCGTGAGTGGGGGGTCAAAGGCGGGAAAGGGTGCTCGACAATCCATATCTTCGGCAACCTGC
GCGACGCCTCTGTCGCAGCGGATCGGCACCGTCACCGGATGCTGAAACGTGGCTACGACCGCGCCTGA

Upstream 100 bases:

>100_bases
AGCTGGCGTTGAACTCTGCTGCACGAGACCAAACCCTCGGCGGACAACAGGCGCGTTTTGGGCTCTTGCAGCGGTGATTC
GGCTGGCGTAGAAAAACCGG

Downstream 100 bases:

>100_bases
GCTGCACAGGATAACTGCGCCAGACCCGCCTTGGAACAAACATCCGCAGTTTGGCCCTTTCAACCCGGACGCCCCTCCCC
TAGTACTTCTGCAACGGGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 75; Mature: 74

Protein sequence:

>75_residues
MATCLLYNHSESRPARFYRIELAMNLFDEVSLLREWGVKGGKGCSTIHIFGNLRDASVAADRHRHRMLKRGYDRA

Sequences:

>Translated_75_residues
MATCLLYNHSESRPARFYRIELAMNLFDEVSLLREWGVKGGKGCSTIHIFGNLRDASVAADRHRHRMLKRGYDRA
>Mature_74_residues
ATCLLYNHSESRPARFYRIELAMNLFDEVSLLREWGVKGGKGCSTIHIFGNLRDASVAADRHRHRMLKRGYDRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8666; Mature: 8535

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATCLLYNHSESRPARFYRIELAMNLFDEVSLLREWGVKGGKGCSTIHIFGNLRDASVAA
CCEEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHH
DRHRHRMLKRGYDRA
HHHHHHHHHCCCCCC
>Mature Secondary Structure 
ATCLLYNHSESRPARFYRIELAMNLFDEVSLLREWGVKGGKGCSTIHIFGNLRDASVAA
CEEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHH
DRHRHRMLKRGYDRA
HHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA