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The map label for this gene is 99079917

Identifier: 99079917

GI number: 99079917

Start: 78842

End: 79999

Strand: Reverse

Name: 99079917

Synonym: TM1040_0076

Alternate gene names: NA

Gene position: 79999-78842 (Counterclockwise)

Preceding gene: 99079918

Following gene: 99079915

Centisome position: 2.5

GC content: 56.99

Gene sequence:

>1158_bases
ATGTCGCTGCCTCTATGGAAGATCAAACGCGAGCTGAAGCGTCAAGGCAGGCAGCTAAAGAACATTGGGCCTCGTCTTGC
GAGCCTTTTGTTTTCGCGGACCTATTATGATCTATTCCTTTCTGGAAAGAAGACCGTCACCGAAGGTCAGATCCCCAAGC
GTCCAAAGGTCGCGGTCTACCTGATCTTTCCAAGCTCCGGCATTCTCGGGTCTCATATCGAGGCGCTGCGGTATCTTGCA
CAGAACGGATACGCGCCCGTCGTGGTCTCAAACCTGCCCCTTGATGAGGGCGACCTTGAACACCTGCGCGCTCATGCGCA
TCTCGTCATCCAGCGTCCGAACTATGGCTATGATTTTGGCGGCTACCGCGATGGTGTTCTTGAGGTCGCCGCGCGTCACA
CAAGCGTGGAGCGTTTTGTCCTGCTCAACGATTCTGCCTGGTTCCCCTTGCCTGGGTCGCGCAATTGGCTGGCCGATGCC
GAAGCGCTGGAGCTGGATTTCGCGGGTGCGGCGACGAACTATGGCCACACGCGGGTCGATCCGAAGAATTTCCGGGACAT
CCGCTGGCACTATTCCAGCAATCACCGCAACTTTCACTACTGCTCCTTCGCTTTGATGATGAGCGGGAAGCTGTTCAACG
ATAAGCGGTTTCAGCGCTTCTGGAAGAGCTTTCCGCTCACCAATGACAAGACCGTCACGGTAAGGCGGGGCGAGATTGGC
CTCACGAAATGGGTCATCCAGCAAGGTTTCTCGCATGGCTCTACGCTCGATATTGCCGCGCTTGATCAAAGGCTGGCTGA
ATATGGCATAGATGAGCTGCGCGCGATTGCCGCGCAGACCCTGATGCCGCAGAGCCCCTCGATGAAAGAGGTCCTGGAAG
ACACCGTCCGCTCGGCAGAGAGCAAAGAAGATTTGGTCAACGTGATCCTGACTGCGATCGCGAGGAAAGGCATCAGCTAT
GCGCAACCTCGTCTGATCCACCGTGACTACGGGTTCGCGTTCCTCAAGAAATCGCCGCTTTGGCTGGATGAGGATGCCTC
AAACCTGACCCTCGCCTTCACCCGCGACCTTGATGGAGAATTTGGCAAAGTCCTGCAGGCTGAGGCATTGGACCTGCGCC
GGACAAGAGCGGCGGAATTTGCACCCGCCCCGGACTGA

Upstream 100 bases:

>100_bases
GACGCGCTCAAGCCCTTTGACGCACGCTAGCGCCCCAAGTTGCCTTGGCATCTCGAACAGGCTAATCACCGGCGCATATT
GAGCTGAAAGTGGGTTTTTG

Downstream 100 bases:

>100_bases
GCCGCCTCCCTCGCGACGACCTGCAGGCAAAAAGCCACCGCAAGAAATGCGGTGGCTTTGATCTTTGGTGCGCAATGCGC
GTTTACTCTGGCGCTTTGGT

Product: lipopolysaccharide biosynthesis protein-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 384

Protein sequence:

>385_residues
MSLPLWKIKRELKRQGRQLKNIGPRLASLLFSRTYYDLFLSGKKTVTEGQIPKRPKVAVYLIFPSSGILGSHIEALRYLA
QNGYAPVVVSNLPLDEGDLEHLRAHAHLVIQRPNYGYDFGGYRDGVLEVAARHTSVERFVLLNDSAWFPLPGSRNWLADA
EALELDFAGAATNYGHTRVDPKNFRDIRWHYSSNHRNFHYCSFALMMSGKLFNDKRFQRFWKSFPLTNDKTVTVRRGEIG
LTKWVIQQGFSHGSTLDIAALDQRLAEYGIDELRAIAAQTLMPQSPSMKEVLEDTVRSAESKEDLVNVILTAIARKGISY
AQPRLIHRDYGFAFLKKSPLWLDEDASNLTLAFTRDLDGEFGKVLQAEALDLRRTRAAEFAPAPD

Sequences:

>Translated_385_residues
MSLPLWKIKRELKRQGRQLKNIGPRLASLLFSRTYYDLFLSGKKTVTEGQIPKRPKVAVYLIFPSSGILGSHIEALRYLA
QNGYAPVVVSNLPLDEGDLEHLRAHAHLVIQRPNYGYDFGGYRDGVLEVAARHTSVERFVLLNDSAWFPLPGSRNWLADA
EALELDFAGAATNYGHTRVDPKNFRDIRWHYSSNHRNFHYCSFALMMSGKLFNDKRFQRFWKSFPLTNDKTVTVRRGEIG
LTKWVIQQGFSHGSTLDIAALDQRLAEYGIDELRAIAAQTLMPQSPSMKEVLEDTVRSAESKEDLVNVILTAIARKGISY
AQPRLIHRDYGFAFLKKSPLWLDEDASNLTLAFTRDLDGEFGKVLQAEALDLRRTRAAEFAPAPD
>Mature_384_residues
SLPLWKIKRELKRQGRQLKNIGPRLASLLFSRTYYDLFLSGKKTVTEGQIPKRPKVAVYLIFPSSGILGSHIEALRYLAQ
NGYAPVVVSNLPLDEGDLEHLRAHAHLVIQRPNYGYDFGGYRDGVLEVAARHTSVERFVLLNDSAWFPLPGSRNWLADAE
ALELDFAGAATNYGHTRVDPKNFRDIRWHYSSNHRNFHYCSFALMMSGKLFNDKRFQRFWKSFPLTNDKTVTVRRGEIGL
TKWVIQQGFSHGSTLDIAALDQRLAEYGIDELRAIAAQTLMPQSPSMKEVLEDTVRSAESKEDLVNVILTAIARKGISYA
QPRLIHRDYGFAFLKKSPLWLDEDASNLTLAFTRDLDGEFGKVLQAEALDLRRTRAAEFAPAPD

Specific function: Could have an enzymatic function [H]

COG id: COG3754

COG function: function code M; Lipopolysaccharide biosynthesis protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To V.anguillarum virulence protein virA [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007739 [H]

Pfam domain/function: PF05045 RgpF [H]

EC number: NA

Molecular weight: Translated: 43684; Mature: 43553

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLPLWKIKRELKRQGRQLKNIGPRLASLLFSRTYYDLFLSGKKTVTEGQIPKRPKVAVY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEECCCCCCCCCCEEEE
LIFPSSGILGSHIEALRYLAQNGYAPVVVSNLPLDEGDLEHLRAHAHLVIQRPNYGYDFG
EEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHCCEEEEEECCCCCCCCC
GYRDGVLEVAARHTSVERFVLLNDSAWFPLPGSRNWLADAEALELDFAGAATNYGHTRVD
CCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCHHEEEEECCCCCCCCCCCCC
PKNFRDIRWHYSSNHRNFHYCSFALMMSGKLFNDKRFQRFWKSFPLTNDKTVTVRRGEIG
CCCCCEEEEEECCCCCCEEHHEEEEHHCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCC
LTKWVIQQGFSHGSTLDIAALDQRLAEYGIDELRAIAAQTLMPQSPSMKEVLEDTVRSAE
HHHHHHHHCCCCCCEEEHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
SKEDLVNVILTAIARKGISYAQPRLIHRDYGFAFLKKSPLWLDEDASNLTLAFTRDLDGE
CHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEECCCCEECCCCCCEEEEEEECCCCH
FGKVLQAEALDLRRTRAAEFAPAPD
HHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SLPLWKIKRELKRQGRQLKNIGPRLASLLFSRTYYDLFLSGKKTVTEGQIPKRPKVAVY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEECCCCCCCCCCEEEE
LIFPSSGILGSHIEALRYLAQNGYAPVVVSNLPLDEGDLEHLRAHAHLVIQRPNYGYDFG
EEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHCCEEEEEECCCCCCCCC
GYRDGVLEVAARHTSVERFVLLNDSAWFPLPGSRNWLADAEALELDFAGAATNYGHTRVD
CCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCHHEEEEECCCCCCCCCCCCC
PKNFRDIRWHYSSNHRNFHYCSFALMMSGKLFNDKRFQRFWKSFPLTNDKTVTVRRGEIG
CCCCCEEEEEECCCCCCEEHHEEEEHHCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCC
LTKWVIQQGFSHGSTLDIAALDQRLAEYGIDELRAIAAQTLMPQSPSMKEVLEDTVRSAE
HHHHHHHHCCCCCCEEEHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
SKEDLVNVILTAIARKGISYAQPRLIHRDYGFAFLKKSPLWLDEDASNLTLAFTRDLDGE
CHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEECCCCEECCCCCCEEEEEEECCCCH
FGKVLQAEALDLRRTRAAEFAPAPD
HHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]