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The map label for this gene is ureR [H]

Identifier: 99079914

GI number: 99079914

Start: 75566

End: 76279

Strand: Reverse

Name: ureR [H]

Synonym: TM1040_0073

Alternate gene names: 99079914

Gene position: 76279-75566 (Counterclockwise)

Preceding gene: 99079915

Following gene: 99079907

Centisome position: 2.38

GC content: 61.48

Gene sequence:

>714_bases
ATGGATTTCCGCGCCGCATTGGGGCTCAGGGTGGCCAGCGATGCACCGCCGGATGACATTCGCCGGGCGATTGCGCGCTC
GGACACTGCTGTTGTGCGCAGCCTTTGCCTGGTCCCGGATCCCGGTGTGATCTGCGGCAAGTTTTTGCGCTTGCAACGCT
ATTGCGCGCTCGAAATTCGGATGGCTGTTCAGGATGTCGGCGACCGGAGCCTACGACTCGCAATCGATCCAGCGGCATCT
CAAGACCGCGTGGAAGAACAGCTCATTATCCTGCACGCACTGATGGAGCGCGCAGGGCTTCAGGTGCGAACCTCACGGCA
GGGTGTCATTCACTGGCAGGATGCTCCGCCGCTACCCGAGGTTGACACCGGAACCTCGCAGCGACTGACCGATCATCTGC
ATCACCTGATCGCAAGCGATCCGGCACGGGCGTGGCGTATCGAGGAAACGGCAGCATGGCTTGGCCTCTCGACACGGAGC
CTGCAACGCTACTTGCTGGCCGAAGGGGGGCGCTTCTCCGCAACCCTGCGCCATATGCGCACCAGCCTCGCCTCCGACAT
GTTACGCAACAGCGACCAGAGCCTGGGCGAGATCGGGTTTTGTTGTGGCTACGCGGATCAGGCGCATTTTCAGCGGGAAT
TTCGCAAAGTCAGCGGTCAGACCCCAAGGCGATTTCGCAGCCAACCAAGGGAGAGCGTCAAAACGGCGCTTTGA

Upstream 100 bases:

>100_bases
TTTTTGTTGACACGACTACTGCGCTCTCCTTTTGTCTTCAAACCGTCACGCAAACTTGCAAAAGTAGCCCGAACATCTGG
CATCCGCCGGGAGGGAGAAT

Downstream 100 bases:

>100_bases
CCCGAAACTTTTGCGACGCGCCGCCTTCCGGATGCTTTAGCCGCAGCTCTTCGGAATGCAGCATCATGCGTGGGTGTTCC
AACGCAGCCCCGCTTGCATA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MDFRAALGLRVASDAPPDDIRRAIARSDTAVVRSLCLVPDPGVICGKFLRLQRYCALEIRMAVQDVGDRSLRLAIDPAAS
QDRVEEQLIILHALMERAGLQVRTSRQGVIHWQDAPPLPEVDTGTSQRLTDHLHHLIASDPARAWRIEETAAWLGLSTRS
LQRYLLAEGGRFSATLRHMRTSLASDMLRNSDQSLGEIGFCCGYADQAHFQREFRKVSGQTPRRFRSQPRESVKTAL

Sequences:

>Translated_237_residues
MDFRAALGLRVASDAPPDDIRRAIARSDTAVVRSLCLVPDPGVICGKFLRLQRYCALEIRMAVQDVGDRSLRLAIDPAAS
QDRVEEQLIILHALMERAGLQVRTSRQGVIHWQDAPPLPEVDTGTSQRLTDHLHHLIASDPARAWRIEETAAWLGLSTRS
LQRYLLAEGGRFSATLRHMRTSLASDMLRNSDQSLGEIGFCCGYADQAHFQREFRKVSGQTPRRFRSQPRESVKTAL
>Mature_237_residues
MDFRAALGLRVASDAPPDDIRRAIARSDTAVVRSLCLVPDPGVICGKFLRLQRYCALEIRMAVQDVGDRSLRLAIDPAAS
QDRVEEQLIILHALMERAGLQVRTSRQGVIHWQDAPPLPEVDTGTSQRLTDHLHHLIASDPARAWRIEETAAWLGLSTRS
LQRYLLAEGGRFSATLRHMRTSLASDMLRNSDQSLGEIGFCCGYADQAHFQREFRKVSGQTPRRFRSQPRESVKTAL

Specific function: Positive regulator of the expression of the urease operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 26567; Mature: 26567

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFRAALGLRVASDAPPDDIRRAIARSDTAVVRSLCLVPDPGVICGKFLRLQRYCALEIR
CCCHHHHCCEECCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
MAVQDVGDRSLRLAIDPAASQDRVEEQLIILHALMERAGLQVRTSRQGVIHWQDAPPLPE
HHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCCC
VDTGTSQRLTDHLHHLIASDPARAWRIEETAAWLGLSTRSLQRYLLAEGGRFSATLRHMR
CCCCCHHHHHHHHHHHHHCCCHHHEEHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
TSLASDMLRNSDQSLGEIGFCCGYADQAHFQREFRKVSGQTPRRFRSQPRESVKTAL
HHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHCC
>Mature Secondary Structure
MDFRAALGLRVASDAPPDDIRRAIARSDTAVVRSLCLVPDPGVICGKFLRLQRYCALEIR
CCCHHHHCCEECCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
MAVQDVGDRSLRLAIDPAASQDRVEEQLIILHALMERAGLQVRTSRQGVIHWQDAPPLPE
HHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCCC
VDTGTSQRLTDHLHHLIASDPARAWRIEETAAWLGLSTRSLQRYLLAEGGRFSATLRHMR
CCCCCHHHHHHHHHHHHHCCCHHHEEHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
TSLASDMLRNSDQSLGEIGFCCGYADQAHFQREFRKVSGQTPRRFRSQPRESVKTAL
HHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7678244 [H]