| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is ywrD [H]
Identifier: 99079905
GI number: 99079905
Start: 68184
End: 69761
Strand: Reverse
Name: ywrD [H]
Synonym: TM1040_0064
Alternate gene names: 99079905
Gene position: 69761-68184 (Counterclockwise)
Preceding gene: 99079906
Following gene: 99079903
Centisome position: 2.18
GC content: 62.8
Gene sequence:
>1578_bases ATGCGTGATTTCCAGACACCGGGCCGCTCTGCGGTCTTTGCGCAAAACGGCCTATGTGCCACGTCCCACCCGCTGGCCGC TCAGGTTGCGGTGGATGTGTTGAAACGCGGCGGCAACGCCATGGATGCCGCGATTGCTGGCGCCGTTCTTTTGGGGATTT GTGAGCCGCAAATGACCGGAATCGGTGGCGACTGCTTTGTGCTCTACAATCGCGCGGGCGAAACAACCGTGCGGGCGCTG AATGGATCAGGTCGTGCCCCGAAGGCTGCACAGGCCGCAGATCTGCGCGCTCGTGGCCTGGAGGCGGTGCCGCTGAACAG TGCCGATGCCGTGACCGTGCCCGGTGCGATTGATGCATTCTGCCATCTCTCTGAAACCGAAGGTAAACTTGGCCTCGATG CGCTCCTGGCGCCATCTATCCACTACGCCGAGGAAGGCGTGCCGGTCGCACCGCGCGTGGCCTTCGACTGGGGCAACGAC GCCGAAACACTGCAGGGCAGCGCACGCGACACCTACCTGATCAACGGGCGCGTGCCGCGCGTCGGAGAGATCTTCCGCGC CCCCGGCCAGGCCGAAGTGCTGCGCCGCATTGCCCGCGACGGGCGCGACGCGTTCTACAGCGGTGAAATCGCAGAAGACA TGATTTCAGCCCTCACCACACGCGGTGGGGTGCACACCGCCGAGGATTTTGCGGCCACCCAAGCCACCGCGACCGACCCG ATCCAAGGGCACTACAAAGGGGTCGACCTGCTGGAGCATCCACCCAACGGGCAAGGGGCAACGGCGATCCTGATGCTCAA CATCCTGAAGCATTTCGACATCGCGGGGATGGATCCATTTGGTGCCGCGCGCGCCCACATCGAGGCCGAGGCAGCCAAGC TGGCATATGACACGCGCAACCGGTTCCTCGCCGACCCCGACCATATGTCGCGTCTTGATTACATGTTGGCGCCGGAAACC GCTGAGAAGCTGGCCGCGCTAATTGACCCCAAACGCGCGATGGCGTCGCCCGCCGACATCAGCGAAGCAGTCCACAAAGA CACCATCTACATCACCGTGGTCGACAAGGACCGCATGGCCGTTTCGCTGATTTATTCAATTTTTCATGGGTTTGGCTCCG GGATTGCCTCCGACAAATTCGGTATCCTGCTGCAGAACCGAGGGGCGGGTTTCTGCCTCGAGGACGGGCACGCCAACGAG CTTGCAGGCGGCAAGCGTCCGATGCACACGATCATCCCGGCCATGCTGGCCGAAAACGGGCGCATCACCATGCCATTTGG CGTAATGGGCGGCGCATACCAGCCCAATGGCCACGCCCGGTTTGTCTCCAACCTGCGTGACTTTGGCATGGAGCCGCAGG CGGCCATGGACGCCCCCCGCGCCTTTACCGATCGCGGCGTCTTCAACGTTGAGCGCGGATACAGCGATGCTGTCCGCGCC GAACTAACGGAGATGGGCCACAAGGTGGATATCCCTACCACCGCAATCGGCGGCTCGCAGGCGATCCACATTCACGACAC CGGTGTGTTGGAGGGTGCAAGCGATCCACGCAAGGATGGTTGCGCGCTCGGTTACTAA
Upstream 100 bases:
>100_bases CAGCACACTCTCAGCATTCCAGCGTTCGCAGCCTTGGCGTTTTTGCCATTGCCACTTTGCCCCAGACCACTAGGCTCTGC GCGAAAAAGGGAGAACAGGA
Downstream 100 bases:
>100_bases AACCACGCGGGATGCCGGGCCACACCCGGCGTCCCCATCAGTTCAACTGGTATTGCAACTGATAATTGCCGTCATCAAAG CCCGTGAACATCTCGTGCAG
Product: gamma-glutamyltransferase 2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 525; Mature: 525
Protein sequence:
>525_residues MRDFQTPGRSAVFAQNGLCATSHPLAAQVAVDVLKRGGNAMDAAIAGAVLLGICEPQMTGIGGDCFVLYNRAGETTVRAL NGSGRAPKAAQAADLRARGLEAVPLNSADAVTVPGAIDAFCHLSETEGKLGLDALLAPSIHYAEEGVPVAPRVAFDWGND AETLQGSARDTYLINGRVPRVGEIFRAPGQAEVLRRIARDGRDAFYSGEIAEDMISALTTRGGVHTAEDFAATQATATDP IQGHYKGVDLLEHPPNGQGATAILMLNILKHFDIAGMDPFGAARAHIEAEAAKLAYDTRNRFLADPDHMSRLDYMLAPET AEKLAALIDPKRAMASPADISEAVHKDTIYITVVDKDRMAVSLIYSIFHGFGSGIASDKFGILLQNRGAGFCLEDGHANE LAGGKRPMHTIIPAMLAENGRITMPFGVMGGAYQPNGHARFVSNLRDFGMEPQAAMDAPRAFTDRGVFNVERGYSDAVRA ELTEMGHKVDIPTTAIGGSQAIHIHDTGVLEGASDPRKDGCALGY
Sequences:
>Translated_525_residues MRDFQTPGRSAVFAQNGLCATSHPLAAQVAVDVLKRGGNAMDAAIAGAVLLGICEPQMTGIGGDCFVLYNRAGETTVRAL NGSGRAPKAAQAADLRARGLEAVPLNSADAVTVPGAIDAFCHLSETEGKLGLDALLAPSIHYAEEGVPVAPRVAFDWGND AETLQGSARDTYLINGRVPRVGEIFRAPGQAEVLRRIARDGRDAFYSGEIAEDMISALTTRGGVHTAEDFAATQATATDP IQGHYKGVDLLEHPPNGQGATAILMLNILKHFDIAGMDPFGAARAHIEAEAAKLAYDTRNRFLADPDHMSRLDYMLAPET AEKLAALIDPKRAMASPADISEAVHKDTIYITVVDKDRMAVSLIYSIFHGFGSGIASDKFGILLQNRGAGFCLEDGHANE LAGGKRPMHTIIPAMLAENGRITMPFGVMGGAYQPNGHARFVSNLRDFGMEPQAAMDAPRAFTDRGVFNVERGYSDAVRA ELTEMGHKVDIPTTAIGGSQAIHIHDTGVLEGASDPRKDGCALGY >Mature_525_residues MRDFQTPGRSAVFAQNGLCATSHPLAAQVAVDVLKRGGNAMDAAIAGAVLLGICEPQMTGIGGDCFVLYNRAGETTVRAL NGSGRAPKAAQAADLRARGLEAVPLNSADAVTVPGAIDAFCHLSETEGKLGLDALLAPSIHYAEEGVPVAPRVAFDWGND AETLQGSARDTYLINGRVPRVGEIFRAPGQAEVLRRIARDGRDAFYSGEIAEDMISALTTRGGVHTAEDFAATQATATDP IQGHYKGVDLLEHPPNGQGATAILMLNILKHFDIAGMDPFGAARAHIEAEAAKLAYDTRNRFLADPDHMSRLDYMLAPET AEKLAALIDPKRAMASPADISEAVHKDTIYITVVDKDRMAVSLIYSIFHGFGSGIASDKFGILLQNRGAGFCLEDGHANE LAGGKRPMHTIIPAMLAENGRITMPFGVMGGAYQPNGHARFVSNLRDFGMEPQAAMDAPRAFTDRGVFNVERGYSDAVRA ELTEMGHKVDIPTTAIGGSQAIHIHDTGVLEGASDPRKDGCALGY
Specific function: GGT PLAYS A KEY ROLE IN THE GAMMA-GLUTAMYL CYCLE, A PATHWAY FOR THE SYNTHESIS AND DEGRADATION OF GLUTATHIONE. [C]
COG id: COG0405
COG function: function code E; Gamma-glutamyltransferase
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the gamma-glutamyltransferase family [H]
Homologues:
Organism=Homo sapiens, GI73915092, Length=556, Percent_Identity=27.158273381295, Blast_Score=134, Evalue=2e-31, Organism=Homo sapiens, GI73915090, Length=556, Percent_Identity=27.158273381295, Blast_Score=134, Evalue=2e-31, Organism=Homo sapiens, GI73915096, Length=556, Percent_Identity=27.158273381295, Blast_Score=134, Evalue=2e-31, Organism=Homo sapiens, GI73915094, Length=556, Percent_Identity=27.158273381295, Blast_Score=134, Evalue=2e-31, Organism=Homo sapiens, GI113429324, Length=537, Percent_Identity=27.1880819366853, Blast_Score=128, Evalue=2e-29, Organism=Homo sapiens, GI113429326, Length=543, Percent_Identity=27.0718232044199, Blast_Score=124, Evalue=2e-28, Organism=Homo sapiens, GI153266885, Length=531, Percent_Identity=25.2354048964218, Blast_Score=112, Evalue=9e-25, Organism=Homo sapiens, GI153266901, Length=532, Percent_Identity=25.187969924812, Blast_Score=111, Evalue=1e-24, Organism=Homo sapiens, GI109148539, Length=449, Percent_Identity=28.0623608017817, Blast_Score=109, Evalue=8e-24, Organism=Homo sapiens, GI153266907, Length=530, Percent_Identity=23.5849056603774, Blast_Score=96, Evalue=7e-20, Organism=Escherichia coli, GI1789856, Length=542, Percent_Identity=32.2878228782288, Blast_Score=212, Evalue=5e-56, Organism=Caenorhabditis elegans, GI193208247, Length=500, Percent_Identity=26.2, Blast_Score=122, Evalue=6e-28, Organism=Caenorhabditis elegans, GI193208245, Length=500, Percent_Identity=26.2, Blast_Score=121, Evalue=7e-28, Organism=Caenorhabditis elegans, GI72000294, Length=499, Percent_Identity=24.6492985971944, Blast_Score=109, Evalue=4e-24, Organism=Caenorhabditis elegans, GI212646519, Length=499, Percent_Identity=24.6492985971944, Blast_Score=109, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17506189, Length=484, Percent_Identity=25.8264462809917, Blast_Score=102, Evalue=5e-22, Organism=Caenorhabditis elegans, GI17542894, Length=468, Percent_Identity=25.6410256410256, Blast_Score=96, Evalue=4e-20, Organism=Drosophila melanogaster, GI161077880, Length=550, Percent_Identity=25.4545454545455, Blast_Score=111, Evalue=1e-24, Organism=Drosophila melanogaster, GI45551474, Length=550, Percent_Identity=25.4545454545455, Blast_Score=111, Evalue=1e-24, Organism=Drosophila melanogaster, GI161077878, Length=550, Percent_Identity=25.4545454545455, Blast_Score=110, Evalue=2e-24, Organism=Drosophila melanogaster, GI24642670, Length=550, Percent_Identity=25.4545454545455, Blast_Score=110, Evalue=2e-24, Organism=Drosophila melanogaster, GI24642666, Length=550, Percent_Identity=25.4545454545455, Blast_Score=110, Evalue=2e-24, Organism=Drosophila melanogaster, GI18859741, Length=506, Percent_Identity=24.3083003952569, Blast_Score=102, Evalue=5e-22, Organism=Drosophila melanogaster, GI161077496, Length=453, Percent_Identity=24.5033112582781, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI18859893, Length=434, Percent_Identity=25.8064516129032, Blast_Score=93, Evalue=5e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000101 [H]
Pfam domain/function: PF01019 G_glu_transpept [H]
EC number: =2.3.2.2 [H]
Molecular weight: Translated: 55642; Mature: 55642
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRDFQTPGRSAVFAQNGLCATSHPLAAQVAVDVLKRGGNAMDAAIAGAVLLGICEPQMTG CCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHCC IGGDCFVLYNRAGETTVRALNGSGRAPKAAQAADLRARGLEAVPLNSADAVTVPGAIDAF CCCCEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHCCCEEECCCCCCCEECCCHHHHH CHLSETEGKLGLDALLAPSIHYAEEGVPVAPRVAFDWGNDAETLQGSARDTYLINGRVPR EECCCCCCCCCHHHHHCCCHHHHCCCCCCCCEEEEECCCCHHHHCCCCCCEEEECCCCCC VGEIFRAPGQAEVLRRIARDGRDAFYSGEIAEDMISALTTRGGVHTAEDFAATQATATDP HHHHHCCCCHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCC IQGHYKGVDLLEHPPNGQGATAILMLNILKHFDIAGMDPFGAARAHIEAEAAKLAYDTRN CCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCC RFLADPDHMSRLDYMLAPETAEKLAALIDPKRAMASPADISEAVHKDTIYITVVDKDRMA CCCCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHCCCHHHHHHHCCCEEEEEEECCCHHH VSLIYSIFHGFGSGIASDKFGILLQNRGAGFCLEDGHANELAGGKRPMHTIIPAMLAENG HHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHCCC RITMPFGVMGGAYQPNGHARFVSNLRDFGMEPQAAMDAPRAFTDRGVFNVERGYSDAVRA CEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHHCCCCEEECCCCHHHHHH ELTEMGHKVDIPTTAIGGSQAIHIHDTGVLEGASDPRKDGCALGY HHHHCCCEECCCCEECCCCCEEEEECCCEECCCCCCCCCCCCCCC >Mature Secondary Structure MRDFQTPGRSAVFAQNGLCATSHPLAAQVAVDVLKRGGNAMDAAIAGAVLLGICEPQMTG CCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHCC IGGDCFVLYNRAGETTVRALNGSGRAPKAAQAADLRARGLEAVPLNSADAVTVPGAIDAF CCCCEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHCCCEEECCCCCCCEECCCHHHHH CHLSETEGKLGLDALLAPSIHYAEEGVPVAPRVAFDWGNDAETLQGSARDTYLINGRVPR EECCCCCCCCCHHHHHCCCHHHHCCCCCCCCEEEEECCCCHHHHCCCCCCEEEECCCCCC VGEIFRAPGQAEVLRRIARDGRDAFYSGEIAEDMISALTTRGGVHTAEDFAATQATATDP HHHHHCCCCHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCC IQGHYKGVDLLEHPPNGQGATAILMLNILKHFDIAGMDPFGAARAHIEAEAAKLAYDTRN CCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCC RFLADPDHMSRLDYMLAPETAEKLAALIDPKRAMASPADISEAVHKDTIYITVVDKDRMA CCCCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHCCCHHHHHHHCCCEEEEEEECCCHHH VSLIYSIFHGFGSGIASDKFGILLQNRGAGFCLEDGHANELAGGKRPMHTIIPAMLAENG HHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHCCC RITMPFGVMGGAYQPNGHARFVSNLRDFGMEPQAAMDAPRAFTDRGVFNVERGYSDAVRA CEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHHCCCCEEECCCCHHHHHH ELTEMGHKVDIPTTAIGGSQAIHIHDTGVLEGASDPRKDGCALGY HHHHCCCEECCCCEECCCCCEEEEECCCEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9353933; 9384377 [H]