| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is yhbN [C]
Identifier: 99079866
GI number: 99079866
Start: 25581
End: 26015
Strand: Reverse
Name: yhbN [C]
Synonym: TM1040_0025
Alternate gene names: 99079866
Gene position: 26015-25581 (Counterclockwise)
Preceding gene: 99079867
Following gene: 99079865
Centisome position: 0.81
GC content: 60.46
Gene sequence:
>435_bases ATGGCGCAGGGGACAGGCGTGTCCTTTGGGGTGCTGCAAACGGACACTTCGCAGCCCGTTGATATTGCCTCTGACAATAT GAGCGTCAATCAAGAAGATGGCTCTGCGTTGCTGACAGGCAATGTGCTGATTATCCAGGGCGAAATGCGCCTGAGTGCGG ACAACGTGCTTGTGGTCCGGCGCACTGAAGGCAACGGGATCGAACGCCTAGAGGCGCGCGGCAACGTTCTGCTCGTAAGT GGCGAGGATGCTGCCGAGGCGCGCGAGGCGGATTACACCATTCAGAGTGGTACCGTGGTGATGCGTGGCAATGTGCTTTT GACGCAGCAGGGCAGTACCCTTGGCGCAGAGCAGATGACGGTCAATATGACCACCGGGAATGCCACGCTGAGCGGCCGCG TGCGCACCACCCTGCCGGGCAGTGGCGGCAACTGA
Upstream 100 bases:
>100_bases GGTGTACGATCCTGCAAAAATAGAAAGATAACCCGTGCGACGACTGACATTTGTTATTCTTCTTGGTTTGATTTGCATCT TGCATGCCCCATCCGCCGCA
Downstream 100 bases:
>100_bases TGGCAAAACCAAAACTAGAAGTCACCTCCGGCTCGTCGGGTCTGCGCATTGAGAAGATGCGCAAAAGCTATCGCAAACGT GTGGTGATCCGTGACGTCTC
Product: OstA-like protein
Products: NA
Alternate protein names: Lipopolysaccharide Transport Periplasmic Protein LptA; Cell Envelope Biogenesis Protein YhbN; OstA-Like Protein; Cell Envelope Biogenesis YhbN
Number of amino acids: Translated: 144; Mature: 143
Protein sequence:
>144_residues MAQGTGVSFGVLQTDTSQPVDIASDNMSVNQEDGSALLTGNVLIIQGEMRLSADNVLVVRRTEGNGIERLEARGNVLLVS GEDAAEAREADYTIQSGTVVMRGNVLLTQQGSTLGAEQMTVNMTTGNATLSGRVRTTLPGSGGN
Sequences:
>Translated_144_residues MAQGTGVSFGVLQTDTSQPVDIASDNMSVNQEDGSALLTGNVLIIQGEMRLSADNVLVVRRTEGNGIERLEARGNVLLVS GEDAAEAREADYTIQSGTVVMRGNVLLTQQGSTLGAEQMTVNMTTGNATLSGRVRTTLPGSGGN >Mature_143_residues AQGTGVSFGVLQTDTSQPVDIASDNMSVNQEDGSALLTGNVLIIQGEMRLSADNVLVVRRTEGNGIERLEARGNVLLVSG EDAAEAREADYTIQSGTVVMRGNVLLTQQGSTLGAEQMTVNMTTGNATLSGRVRTTLPGSGGN
Specific function: Unknown
COG id: COG1934
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 60 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14955; Mature: 14824
Theoretical pI: Translated: 4.15; Mature: 4.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQGTGVSFGVLQTDTSQPVDIASDNMSVNQEDGSALLTGNVLIIQGEMRLSADNVLVVR CCCCCCCEEEEEECCCCCCCEEECCCCEEECCCCCEEEECCEEEEECCEEECCCCEEEEE RTEGNGIERLEARGNVLLVSGEDAAEAREADYTIQSGTVVMRGNVLLTQQGSTLGAEQMT ECCCCCEEEEECCCCEEEEECCCCCCCCCCCEEEECCEEEEECCEEEEECCCCCCCCEEE VNMTTGNATLSGRVRTTLPGSGGN EEEECCCEEEECEEEEECCCCCCC >Mature Secondary Structure AQGTGVSFGVLQTDTSQPVDIASDNMSVNQEDGSALLTGNVLIIQGEMRLSADNVLVVR CCCCCCEEEEEECCCCCCCEEECCCCEEECCCCCEEEECCEEEEECCEEECCCCEEEEE RTEGNGIERLEARGNVLLVSGEDAAEAREADYTIQSGTVVMRGNVLLTQQGSTLGAEQMT ECCCCCEEEEECCCCEEEEECCCCCCCCCCCEEEECCEEEEECCEEEEECCCCCCCCEEE VNMTTGNATLSGRVRTTLPGSGGN EEEECCCEEEECEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA