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The map label for this gene is radC [C]

Identifier: 99079849

GI number: 99079849

Start: 8429

End: 9205

Strand: Reverse

Name: radC [C]

Synonym: TM1040_0008

Alternate gene names: 99079849

Gene position: 9205-8429 (Counterclockwise)

Preceding gene: 99079850

Following gene: 99079846

Centisome position: 0.29

GC content: 59.2

Gene sequence:

>777_bases
ATGGGGAAATCAGAACGCTTTGAGGAAGATATGCTGCCCCTCTTTGAGGGCGCGAATGGCGACAGTGACGAGGCGCCTCT
CCTGCCCATCATGCAGGGGCGGATCCCATCCTATATCAGAGATCATCGCGCCCGTTTACGCGAACGCTTTATGAGCGCAG
GGGCAATCGGCCTGCCGGACTATGAACTCCTGGAGCTGATCCTCTTTCGCTCCATTCCACGCAAGGACGTGAAGCCCTTG
GCGCATCAGCTTCTTGCCAGTTTTGGCGACCTCAACCGCGTTGTGACCGCCTCTCCGGAGCGGCTCGCTGAGGTGCAAGG
CATCGGACAGGCTGTAATCTGCGATCTCAAGATCTTTGAGGCCGCAGCGCAGCGCATGGCGCGATCGCGTGTCCTTCAAC
GCCAGGTGATCGCAAGCTGGGATGCACTGCTGGATTACTGCCATACAGCAATGGCACATCGTGAGACAGAGCAGTTCCGC
GTGCTCTATCTCGACCGAAAGAACATCTTGATCGCGGATGAAGAACAGGCTCGCGGCACCGTGGATCACGTCCCGGTTTA
TCCGCGAGAGGTTGCAAAACGGGCGCTGGAGCTCAACGCCAGCGCCCTGATTTTAGTCCACAATCATCCGTCAGGCGATC
CGACCCCCTCTCAGGCGGATATCGGCATGACCCGCAAGGTGGGGGCCGCCCTCGGCGCACTCGACATCACGCTTCATGAC
CACCTGATCATCGGAGCGTCGGACGAGCTGTCCTTTCGCTCCGAAGGCCTGCTTTAG

Upstream 100 bases:

>100_bases
GTGCAAAACGCCCTTCGGGGCGTTTTTCTTTTTGGTAGCCTCACGATCTGCGCCAGCGCTGTTAACACTTTGATAACCAT
TAAGGCGACACCATGGCAGC

Downstream 100 bases:

>100_bases
AAGTCGAGGTTCTCGACACTCAGGGCGTTTTTCTGGATGAACTCGCGGCGCGGCTCCACCACGTCGCCCATCAGCTTGGT
AAAGAGATCATCTGCCTCGA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MGKSERFEEDMLPLFEGANGDSDEAPLLPIMQGRIPSYIRDHRARLRERFMSAGAIGLPDYELLELILFRSIPRKDVKPL
AHQLLASFGDLNRVVTASPERLAEVQGIGQAVICDLKIFEAAAQRMARSRVLQRQVIASWDALLDYCHTAMAHRETEQFR
VLYLDRKNILIADEEQARGTVDHVPVYPREVAKRALELNASALILVHNHPSGDPTPSQADIGMTRKVGAALGALDITLHD
HLIIGASDELSFRSEGLL

Sequences:

>Translated_258_residues
MGKSERFEEDMLPLFEGANGDSDEAPLLPIMQGRIPSYIRDHRARLRERFMSAGAIGLPDYELLELILFRSIPRKDVKPL
AHQLLASFGDLNRVVTASPERLAEVQGIGQAVICDLKIFEAAAQRMARSRVLQRQVIASWDALLDYCHTAMAHRETEQFR
VLYLDRKNILIADEEQARGTVDHVPVYPREVAKRALELNASALILVHNHPSGDPTPSQADIGMTRKVGAALGALDITLHD
HLIIGASDELSFRSEGLL
>Mature_257_residues
GKSERFEEDMLPLFEGANGDSDEAPLLPIMQGRIPSYIRDHRARLRERFMSAGAIGLPDYELLELILFRSIPRKDVKPLA
HQLLASFGDLNRVVTASPERLAEVQGIGQAVICDLKIFEAAAQRMARSRVLQRQVIASWDALLDYCHTAMAHRETEQFRV
LYLDRKNILIADEEQARGTVDHVPVYPREVAKRALELNASALILVHNHPSGDPTPSQADIGMTRKVGAALGALDITLHDH
LIIGASDELSFRSEGLL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=212, Percent_Identity=34.9056603773585, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI2367100, Length=122, Percent_Identity=49.1803278688525, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1788997, Length=157, Percent_Identity=42.0382165605096, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1788312, Length=108, Percent_Identity=52.7777777777778, Blast_Score=110, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 28719; Mature: 28588

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKSERFEEDMLPLFEGANGDSDEAPLLPIMQGRIPSYIRDHRARLRERFMSAGAIGLPD
CCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCC
YELLELILFRSIPRKDVKPLAHQLLASFGDLNRVVTASPERLAEVQGIGQAVICDLKIFE
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
AAAQRMARSRVLQRQVIASWDALLDYCHTAMAHRETEQFRVLYLDRKNILIADEEQARGT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEECCHHHCCC
VDHVPVYPREVAKRALELNASALILVHNHPSGDPTPSQADIGMTRKVGAALGALDITLHD
CCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHEEEEEEC
HLIIGASDELSFRSEGLL
EEEEECCCCCCCCCCCCC
>Mature Secondary Structure 
GKSERFEEDMLPLFEGANGDSDEAPLLPIMQGRIPSYIRDHRARLRERFMSAGAIGLPD
CCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCC
YELLELILFRSIPRKDVKPLAHQLLASFGDLNRVVTASPERLAEVQGIGQAVICDLKIFE
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
AAAQRMARSRVLQRQVIASWDALLDYCHTAMAHRETEQFRVLYLDRKNILIADEEQARGT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEECCHHHCCC
VDHVPVYPREVAKRALELNASALILVHNHPSGDPTPSQADIGMTRKVGAALGALDITLHD
CCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHEEEEEEC
HLIIGASDELSFRSEGLL
EEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA