| Definition | Deinococcus geothermalis DSM 11300, complete genome. |
|---|---|
| Accession | NC_008025 |
| Length | 2,467,205 |
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The map label for this gene is gmk
Identifier: 94986383
GI number: 94986383
Start: 2406815
End: 2407543
Strand: Reverse
Name: gmk
Synonym: Dgeo_2284
Alternate gene names: 94986383
Gene position: 2407543-2406815 (Counterclockwise)
Preceding gene: 94986384
Following gene: 94986377
Centisome position: 97.58
GC content: 62.69
Gene sequence:
>729_bases ATGCTGCCTAGCATGATGGTTGCTCGGCCTGACCCACAAACCACTTCGTCCTCTTCTCACCGCGGCCTCCTGATCGTGAT GACCGGCGCTTCGGGCGTCGGCAAGGGCACGCTGCGCGAGCGTTGGCTGGCTGGACAGGACGTGTTCTATTCAACCTCAT GGACGACTCGTGAGGCGCGTCCCGGTGAACGTGACGGTGTGGATTACGTGTTCGTGACCCCTGAGGTGTTTCTGGAAAAG GTTCGGCAGAACGGCTTTCTGGAACACGCCCAATTTGTGGGGAACCACTACGGCACGCCCACTGAACCCATTGAGGCGGC ACTCGCACGTGGGCAGGACGTGGTGCTGGAGATCGAGGTCGAGGGGGCGATGCAGGTCAAGGAACGGATGGGCGAGGAGG CGGTGCTGGTGTTTATCATGCCGCCCAGTCTGACCGAGCTGCGCCGCCGCCTGACCGGGCGCGCCACCGAGACGCCCGAG CGTATTGAGAAACGCCTGCAGCGGGCCCGCGACGAGATCATGGCGGCCCACGCCTTTCGTTACGTGATTGTGAACGACGA TCTGGACCGTGCCGTCCGTGAACTGCAGGCCGTCCAACGCGCCGAGCATGCACGGCAGCGCCCAGAAACCGAGTGGACGG CAGAAGACCGGGCAGCGGTGCAGCTTGCCGAAACAGTACGGAGCACGGTCCTGACCACCGAAGATCTACAGCGGATTGTC AACAGTTAA
Upstream 100 bases:
>100_bases GCCGGAGCAAAACCAAGTCAAGGTAGCGCTTCAGCGCTCAGGTGGGCCAGGCGCGGCGGTTTTCCGTCTGCTCTGGCCCG CTTTCCGTTCGCCGAGCCGT
Downstream 100 bases:
>100_bases TGTTGCCCGCTCACCTCTGCAAAACGCCCTTGACGACCTGCACGACGTTCGGCACGTTGAAGCCGAATTTCTCAAAGAGG ACTTTGGCTGGGGCCGAGGC
Product: guanylate kinase
Products: NA
Alternate protein names: GMP kinase
Number of amino acids: Translated: 242; Mature: 242
Protein sequence:
>242_residues MLPSMMVARPDPQTTSSSSHRGLLIVMTGASGVGKGTLRERWLAGQDVFYSTSWTTREARPGERDGVDYVFVTPEVFLEK VRQNGFLEHAQFVGNHYGTPTEPIEAALARGQDVVLEIEVEGAMQVKERMGEEAVLVFIMPPSLTELRRRLTGRATETPE RIEKRLQRARDEIMAAHAFRYVIVNDDLDRAVRELQAVQRAEHARQRPETEWTAEDRAAVQLAETVRSTVLTTEDLQRIV NS
Sequences:
>Translated_242_residues MLPSMMVARPDPQTTSSSSHRGLLIVMTGASGVGKGTLRERWLAGQDVFYSTSWTTREARPGERDGVDYVFVTPEVFLEK VRQNGFLEHAQFVGNHYGTPTEPIEAALARGQDVVLEIEVEGAMQVKERMGEEAVLVFIMPPSLTELRRRLTGRATETPE RIEKRLQRARDEIMAAHAFRYVIVNDDLDRAVRELQAVQRAEHARQRPETEWTAEDRAAVQLAETVRSTVLTTEDLQRIV NS >Mature_242_residues MLPSMMVARPDPQTTSSSSHRGLLIVMTGASGVGKGTLRERWLAGQDVFYSTSWTTREARPGERDGVDYVFVTPEVFLEK VRQNGFLEHAQFVGNHYGTPTEPIEAALARGQDVVLEIEVEGAMQVKERMGEEAVLVFIMPPSLTELRRRLTGRATETPE RIEKRLQRARDEIMAAHAFRYVIVNDDLDRAVRELQAVQRAEHARQRPETEWTAEDRAAVQLAETVRSTVLTTEDLQRIV NS
Specific function: Essential for recycling GMP and indirectly, cGMP
COG id: COG0194
COG function: function code F; Guanylate kinase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 guanylate kinase-like domain
Homologues:
Organism=Homo sapiens, GI226874833, Length=177, Percent_Identity=39.5480225988701, Blast_Score=118, Evalue=5e-27, Organism=Homo sapiens, GI4504221, Length=177, Percent_Identity=39.5480225988701, Blast_Score=118, Evalue=5e-27, Organism=Homo sapiens, GI226874831, Length=177, Percent_Identity=39.5480225988701, Blast_Score=117, Evalue=7e-27, Organism=Homo sapiens, GI21361598, Length=200, Percent_Identity=28.5, Blast_Score=79, Evalue=2e-15, Organism=Homo sapiens, GI38570142, Length=175, Percent_Identity=30.2857142857143, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI111154074, Length=155, Percent_Identity=28.3870967741935, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI52630447, Length=198, Percent_Identity=29.7979797979798, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI262118255, Length=191, Percent_Identity=27.2251308900524, Blast_Score=74, Evalue=8e-14, Organism=Homo sapiens, GI4505237, Length=191, Percent_Identity=27.2251308900524, Blast_Score=74, Evalue=8e-14, Organism=Homo sapiens, GI262118259, Length=191, Percent_Identity=27.2251308900524, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI262118263, Length=191, Percent_Identity=27.2251308900524, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI14780902, Length=206, Percent_Identity=25.2427184466019, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI21536464, Length=189, Percent_Identity=28.042328042328, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI186700629, Length=194, Percent_Identity=27.8350515463918, Blast_Score=65, Evalue=7e-11, Organism=Homo sapiens, GI186700627, Length=194, Percent_Identity=27.8350515463918, Blast_Score=65, Evalue=7e-11, Organism=Homo sapiens, GI186972120, Length=194, Percent_Identity=27.8350515463918, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI1790080, Length=188, Percent_Identity=42.5531914893617, Blast_Score=146, Evalue=1e-36, Organism=Caenorhabditis elegans, GI193203132, Length=177, Percent_Identity=38.4180790960452, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17508835, Length=177, Percent_Identity=38.4180790960452, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17557440, Length=181, Percent_Identity=29.2817679558011, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI71988048, Length=185, Percent_Identity=29.1891891891892, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI71988041, Length=183, Percent_Identity=27.3224043715847, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6320662, Length=182, Percent_Identity=42.8571428571429, Blast_Score=137, Evalue=2e-33, Organism=Drosophila melanogaster, GI21356141, Length=177, Percent_Identity=37.8531073446328, Blast_Score=105, Evalue=4e-23, Organism=Drosophila melanogaster, GI45554489, Length=197, Percent_Identity=29.9492385786802, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI161077626, Length=197, Percent_Identity=29.9492385786802, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI45554481, Length=197, Percent_Identity=29.9492385786802, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI24640542, Length=197, Percent_Identity=29.9492385786802, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI85724806, Length=197, Percent_Identity=29.9492385786802, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI116007136, Length=197, Percent_Identity=29.9492385786802, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI221330162, Length=194, Percent_Identity=31.4432989690722, Blast_Score=71, Evalue=5e-13, Organism=Drosophila melanogaster, GI221330166, Length=194, Percent_Identity=31.4432989690722, Blast_Score=71, Evalue=5e-13, Organism=Drosophila melanogaster, GI221330164, Length=194, Percent_Identity=31.4432989690722, Blast_Score=71, Evalue=7e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): KGUA_DEIGD (Q1IW06)
Other databases:
- EMBL: CP000359 - RefSeq: YP_605747.1 - ProteinModelPortal: Q1IW06 - SMR: Q1IW06 - STRING: Q1IW06 - GeneID: 4059233 - GenomeReviews: CP000359_GR - KEGG: dge:Dgeo_2284 - NMPDR: fig|68909.1.peg.1392 - eggNOG: COG0194 - HOGENOM: HBG671982 - OMA: EWAEFAG - PhylomeDB: Q1IW06 - ProtClustDB: PRK00300 - BioCyc: DGEO319795:DGEO_2284-MONOMER - GO: GO:0005737 - HAMAP: MF_00328 - InterPro: IPR008144 - InterPro: IPR008145 - InterPro: IPR020590 - InterPro: IPR017665 - SMART: SM00072 - TIGRFAMs: TIGR03263
Pfam domain/function: PF00625 Guanylate_kin
EC number: =2.7.4.8
Molecular weight: Translated: 27315; Mature: 27315
Theoretical pI: Translated: 5.45; Mature: 5.45
Prosite motif: PS00856 GUANYLATE_KINASE_1; PS50052 GUANYLATE_KINASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLPSMMVARPDPQTTSSSSHRGLLIVMTGASGVGKGTLRERWLAGQDVFYSTSWTTREAR CCCCCCEECCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHCCCCCEEEECCCCCCCCC PGERDGVDYVFVTPEVFLEKVRQNGFLEHAQFVGNHYGTPTEPIEAALARGQDVVLEIEV CCCCCCCCEEEECHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEEEEE EGAMQVKERMGEEAVLVFIMPPSLTELRRRLTGRATETPERIEKRLQRARDEIMAAHAFR CCHHHHHHHCCCCEEEEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHEE YVIVNDDLDRAVRELQAVQRAEHARQRPETEWTAEDRAAVQLAETVRSTVLTTEDLQRIV EEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHH NS CC >Mature Secondary Structure MLPSMMVARPDPQTTSSSSHRGLLIVMTGASGVGKGTLRERWLAGQDVFYSTSWTTREAR CCCCCCEECCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHCCCCCEEEECCCCCCCCC PGERDGVDYVFVTPEVFLEKVRQNGFLEHAQFVGNHYGTPTEPIEAALARGQDVVLEIEV CCCCCCCCEEEECHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEEEEE EGAMQVKERMGEEAVLVFIMPPSLTELRRRLTGRATETPERIEKRLQRARDEIMAAHAFR CCHHHHHHHCCCCEEEEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHEE YVIVNDDLDRAVRELQAVQRAEHARQRPETEWTAEDRAAVQLAETVRSTVLTTEDLQRIV EEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHH NS CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA