Definition Deinococcus geothermalis DSM 11300, complete genome.
Accession NC_008025
Length 2,467,205

Click here to switch to the map view.

The map label for this gene is 94986350

Identifier: 94986350

GI number: 94986350

Start: 2377546

End: 2377815

Strand: Reverse

Name: 94986350

Synonym: Dgeo_2251

Alternate gene names: NA

Gene position: 2377815-2377546 (Counterclockwise)

Preceding gene: 94986353

Following gene: 94986349

Centisome position: 96.38

GC content: 58.89

Gene sequence:

>270_bases
ATGAGTTGGATTATCCTGATTCTGGTTGGTGCGCTGTGCGGTTGGCTCGCGAGCCTTATCATGAAGACCGATGCACAACA
GGGCGCGGTTGCCAACATCCTGATTGGGATCGTGGGTGCGCTCCTCGCGCAGTGGATCTTTGGGGGGCTGCTTGGGATCG
GTGGGGCCTACGCGGCAGGCAACGGCTTCAACTTCTGGAGCATTATCTGGGGCATTGTCGGCAGCGTGATCTTGATCGCG
ATTCTCAAGGCGCTGCGCGTACTGCGCTGA

Upstream 100 bases:

>100_bases
GAAGGTGATGAGAGGAACACTGGGTGAAGTCGCTCAGTTTCATTGTGCGGTCACAACGAACGAGAGACGTTCGCACACTC
AAGGTCCTGGAGGAGAGAAG

Downstream 100 bases:

>100_bases
TCAGCTTCTGTCTCAGCTCCCGTCGTGGCCGGACTCCCTGGTGGGGTCCGGTCTTTTTTGGCCTGGCCTTTGCACAACTG
CGCGTACTGCGCTCGGCACT

Product: transglycosylase-associated protein

Products: NA

Alternate protein names: Transglycosylase-Associated Protein

Number of amino acids: Translated: 89; Mature: 88

Protein sequence:

>89_residues
MSWIILILVGALCGWLASLIMKTDAQQGAVANILIGIVGALLAQWIFGGLLGIGGAYAAGNGFNFWSIIWGIVGSVILIA
ILKALRVLR

Sequences:

>Translated_89_residues
MSWIILILVGALCGWLASLIMKTDAQQGAVANILIGIVGALLAQWIFGGLLGIGGAYAAGNGFNFWSIIWGIVGSVILIA
ILKALRVLR
>Mature_88_residues
SWIILILVGALCGWLASLIMKTDAQQGAVANILIGIVGALLAQWIFGGLLGIGGAYAAGNGFNFWSIIWGIVGSVILIAI
LKALRVLR

Specific function: Unknown

COG id: COG2261

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9308; Mature: 9176

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSWIILILVGALCGWLASLIMKTDAQQGAVANILIGIVGALLAQWIFGGLLGIGGAYAAG
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCC
NGFNFWSIIWGIVGSVILIAILKALRVLR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
SWIILILVGALCGWLASLIMKTDAQQGAVANILIGIVGALLAQWIFGGLLGIGGAYAAG
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCC
NGFNFWSIIWGIVGSVILIAILKALRVLR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA