| Definition | Deinococcus geothermalis DSM 11300, complete genome. |
|---|---|
| Accession | NC_008025 |
| Length | 2,467,205 |
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The map label for this gene is dnaC [H]
Identifier: 94986136
GI number: 94986136
Start: 2143701
End: 2146250
Strand: Reverse
Name: dnaC [H]
Synonym: Dgeo_2037
Alternate gene names: 94986136
Gene position: 2146250-2143701 (Counterclockwise)
Preceding gene: 94986140
Following gene: 94986135
Centisome position: 86.99
GC content: 64.55
Gene sequence:
>2550_bases ATGGAACTGACACCGCGTGTTCCCCCGCATAGCAATGAAGCCGAGATCAGCGTTTTGGGAAGCATTCTGCTGGACAACGA CACGCTGATTGGGCTGGGCGACACGTTGACGCCTGAAATGTTTTATCGCGAAGGCCACCGCAAGATTTTCGCGGCCATGC GCGCTCTACAGGAACGCGGCGAGCCGGTGGACCTGGTGACCCTCAGCGAGCATCTGCGCGTGCAGGGACAGCTTGACGAG GTGGGTGGGCTGACCTATCTGATCGGGCTATCGGAGCAGGTACCGACGGCCGCCTACGCCGAGCACTACGCCCGGATCGT GCAGGAAAAACACACGCTGCGGCAGCTGATCAGCGCGTCGGGCAAGGCAATGCAGCTCGCCTACGAAGGACAATTGCCGC TCGAAGACCTGCTCGACCGTGCCGAGAAAATGATCTTCGAGGTGGCCGAGCAGAAGAAGAAGAGTGAGGCTTTCCAGGCG ATGGGCGAGGTGGTCCACGAGACCTTCGAATACATCACCCTGCTGCATCAGAACCGGGGCATTCCCGACGGCGTGAGCAG CGGCTTTCGTGACCTGGACGAACAGATTTCGGGCTTCCAGAAGGGGAGTCTCAATGTGCTGGCGGCGCGGCCCTCCATGG GCAAATGCGTGACGGCGGACACCCTGATTGACGTGCCGGGGACCGGGGAGCGGATCACGGTCGAGGCGTTCGTGCGCCGG CAATGGCCTGTAGTGCTGAGTGTCAGTGCAGACGGCCGGGTGCGCGAGTCGCGCGTCGGCGCCTGGATCGACAGCGGCGT GAAACCCGTGCGCCGCGTCACGACCCGCACGGGCCGCGTCGTGGAAACCACCCCACACCATCCCTTCCTGGGGGTAGACG GCTGGACGCCCCTCTATGACCTGAAGGTGGGAGACCGGATCGCCGTGCCACGGGCGGTCCCCGTTTTCGGGCAGCGGGAC GTCCTCAGCGCGGAGCGGGTGCGGTTGCTGGCCTACCTGCTGGCCGAAGGGGGCCTGACACAGAGCGGCCCGAGGTGGAC GAACGCGGACCCCGAATTGGTACAGGACTTCCGCGCCTGCCTCGCCGCCGAGTTTCCGGAAGTGGAGATGATGGCCGATG CGTGGACGGGCATCGACGACCGCCTCAGCCGACGTTGGCAGCCGGGCGAACGCCAGGACCGCCCCAACCCCCTGATCGGG TGGCTACGCGAACTTGGCGTGTGGGGCCAGCCCACCGATGCCAAACGGTTTCCAGCGGTGGTCTGGACCTTTACCCGCCC ATCCCTCGCCGCCTTCCTGCGCGTGCTGCTGAGTTGCGACGGGACACTCTCCACGCTGGCTGGGAAAGCCCGCATCGAGT TCACGGTGGCGAGTGAGGGGCTGGCGCGCGACGTGCATCACGCCCTGGTGCGTTTCGGCATTGTGAGCAAGCTGTGGCGC AAGGGCGAGCGCTCATGGCGGGTGGAGATCACCGATCCGCGCAGTGTGGCGGACTACCAGCTGCAGATCGGGTGGCTGGG GGAGAAGGCCCTTCGGACGATCCCCGTCAGTGCCGAAACCCGCAGCCATGTCGGTCATCCGCCTGCCGGAGCGTGGGCGC ACGTGCGGCGGGCGGCGGGGGAGCGGACGGCATCCGGCTTCAACGCCCACACGGGCCGGAGCCTCCCGCAATCCCGCGCG GCCCGGTACGCCGCCGTCCTTGACGACACTCAGCTCACCCTGCTGGGGAGCGACGCGCTGTACTGGGACGACATCGTGAG CATCGAGGATGTGGGCGAGCGGCAGGTGTACGACCTGACCGTGCCCGGTGACGCCAACTTCATCGCCGCCGACATCTGCT TGCACAACACGGCCTTCGCCCTCTCCATCGCCCAGAATGTTGCTCTGCGCGGCGAGAAGACAGTGGCGGTCTTCAGTCTG GAAATGCCCGCCGTGCAGCTCGCCCTGCGGATGCTGTGCAGCGAGGCGCGGGTGGATATGAACCGCATTCGCAGCGGGCA GCTCAATGAACGCGATTTCGAGCGTCTGGCCCATGCTGCGGGCCGCCTCGCCGACGCCCCGATGATTATCGACGACGAGC CGGATCTGACGCTGAATGCCCTGCGCAGCAAGCTCCGGCGCATTGCCGCGCAGCACGGACAACTGGGGTTGGTGGTGATC GACTACCTCCAGCTGATGTCGGGCGGCAAAAACAGTGGAGGCAGCGACAACCGCCAGCAGGAGATCAGCACCATTTCACG CGGCTTGAAGGGCCTGGCACGTGAAATGGAAGTGCCCATCATCGTCCTCAGTCAGCTCAGCCGTGCTGTCGAGCAGCGGC CAAACCACAGACCCATGCTGTCGGATTTGAGGGAATCAGGCGCTATTGAACAGGATGCAGACATCGTGATGTTTATTTAC CGCGACGAGTACTACAACAAGGAAACCGATCAGCAGGGAATTGCTGAGATCATTATCGGCAAGCAGCGCAATGGTCCGGT CGGGACGGTCAAGCTGCAATTCCACAGCGCGCACGTCCGCTTCAACGATCTCGCCCCGGAGGGTGTCTGA
Upstream 100 bases:
>100_bases CCGTTTCATTTCATTCTCTGCACGCGCGGCGTGCTCCGGTCCTGGCTTTGTGGGTGAGCTGGGCGGCGCGCTTCCTTGCG GCGTGCGCGAAAGGCCCTGC
Downstream 100 bases:
>100_bases TGCCGGAAGACGTGAAGGTGGCCTCCGGCAACGCGAGCGGGCAGCGGCGGCGGCGGCGGCGCAGACGTACGCCGGGCCAG AGCGGGACCCTGGCCCCCGG
Product: DnaB-like protein helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 849; Mature: 849
Protein sequence:
>849_residues MELTPRVPPHSNEAEISVLGSILLDNDTLIGLGDTLTPEMFYREGHRKIFAAMRALQERGEPVDLVTLSEHLRVQGQLDE VGGLTYLIGLSEQVPTAAYAEHYARIVQEKHTLRQLISASGKAMQLAYEGQLPLEDLLDRAEKMIFEVAEQKKKSEAFQA MGEVVHETFEYITLLHQNRGIPDGVSSGFRDLDEQISGFQKGSLNVLAARPSMGKCVTADTLIDVPGTGERITVEAFVRR QWPVVLSVSADGRVRESRVGAWIDSGVKPVRRVTTRTGRVVETTPHHPFLGVDGWTPLYDLKVGDRIAVPRAVPVFGQRD VLSAERVRLLAYLLAEGGLTQSGPRWTNADPELVQDFRACLAAEFPEVEMMADAWTGIDDRLSRRWQPGERQDRPNPLIG WLRELGVWGQPTDAKRFPAVVWTFTRPSLAAFLRVLLSCDGTLSTLAGKARIEFTVASEGLARDVHHALVRFGIVSKLWR KGERSWRVEITDPRSVADYQLQIGWLGEKALRTIPVSAETRSHVGHPPAGAWAHVRRAAGERTASGFNAHTGRSLPQSRA ARYAAVLDDTQLTLLGSDALYWDDIVSIEDVGERQVYDLTVPGDANFIAADICLHNTAFALSIAQNVALRGEKTVAVFSL EMPAVQLALRMLCSEARVDMNRIRSGQLNERDFERLAHAAGRLADAPMIIDDEPDLTLNALRSKLRRIAAQHGQLGLVVI DYLQLMSGGKNSGGSDNRQQEISTISRGLKGLAREMEVPIIVLSQLSRAVEQRPNHRPMLSDLRESGAIEQDADIVMFIY RDEYYNKETDQQGIAEIIIGKQRNGPVGTVKLQFHSAHVRFNDLAPEGV
Sequences:
>Translated_849_residues MELTPRVPPHSNEAEISVLGSILLDNDTLIGLGDTLTPEMFYREGHRKIFAAMRALQERGEPVDLVTLSEHLRVQGQLDE VGGLTYLIGLSEQVPTAAYAEHYARIVQEKHTLRQLISASGKAMQLAYEGQLPLEDLLDRAEKMIFEVAEQKKKSEAFQA MGEVVHETFEYITLLHQNRGIPDGVSSGFRDLDEQISGFQKGSLNVLAARPSMGKCVTADTLIDVPGTGERITVEAFVRR QWPVVLSVSADGRVRESRVGAWIDSGVKPVRRVTTRTGRVVETTPHHPFLGVDGWTPLYDLKVGDRIAVPRAVPVFGQRD VLSAERVRLLAYLLAEGGLTQSGPRWTNADPELVQDFRACLAAEFPEVEMMADAWTGIDDRLSRRWQPGERQDRPNPLIG WLRELGVWGQPTDAKRFPAVVWTFTRPSLAAFLRVLLSCDGTLSTLAGKARIEFTVASEGLARDVHHALVRFGIVSKLWR KGERSWRVEITDPRSVADYQLQIGWLGEKALRTIPVSAETRSHVGHPPAGAWAHVRRAAGERTASGFNAHTGRSLPQSRA ARYAAVLDDTQLTLLGSDALYWDDIVSIEDVGERQVYDLTVPGDANFIAADICLHNTAFALSIAQNVALRGEKTVAVFSL EMPAVQLALRMLCSEARVDMNRIRSGQLNERDFERLAHAAGRLADAPMIIDDEPDLTLNALRSKLRRIAAQHGQLGLVVI DYLQLMSGGKNSGGSDNRQQEISTISRGLKGLAREMEVPIIVLSQLSRAVEQRPNHRPMLSDLRESGAIEQDADIVMFIY RDEYYNKETDQQGIAEIIIGKQRNGPVGTVKLQFHSAHVRFNDLAPEGV >Mature_849_residues MELTPRVPPHSNEAEISVLGSILLDNDTLIGLGDTLTPEMFYREGHRKIFAAMRALQERGEPVDLVTLSEHLRVQGQLDE VGGLTYLIGLSEQVPTAAYAEHYARIVQEKHTLRQLISASGKAMQLAYEGQLPLEDLLDRAEKMIFEVAEQKKKSEAFQA MGEVVHETFEYITLLHQNRGIPDGVSSGFRDLDEQISGFQKGSLNVLAARPSMGKCVTADTLIDVPGTGERITVEAFVRR QWPVVLSVSADGRVRESRVGAWIDSGVKPVRRVTTRTGRVVETTPHHPFLGVDGWTPLYDLKVGDRIAVPRAVPVFGQRD VLSAERVRLLAYLLAEGGLTQSGPRWTNADPELVQDFRACLAAEFPEVEMMADAWTGIDDRLSRRWQPGERQDRPNPLIG WLRELGVWGQPTDAKRFPAVVWTFTRPSLAAFLRVLLSCDGTLSTLAGKARIEFTVASEGLARDVHHALVRFGIVSKLWR KGERSWRVEITDPRSVADYQLQIGWLGEKALRTIPVSAETRSHVGHPPAGAWAHVRRAAGERTASGFNAHTGRSLPQSRA ARYAAVLDDTQLTLLGSDALYWDDIVSIEDVGERQVYDLTVPGDANFIAADICLHNTAFALSIAQNVALRGEKTVAVFSL EMPAVQLALRMLCSEARVDMNRIRSGQLNERDFERLAHAAGRLADAPMIIDDEPDLTLNALRSKLRRIAAQHGQLGLVVI DYLQLMSGGKNSGGSDNRQQEISTISRGLKGLAREMEVPIIVLSQLSRAVEQRPNHRPMLSDLRESGAIEQDADIVMFIY RDEYYNKETDQQGIAEIIIGKQRNGPVGTVKLQFHSAHVRFNDLAPEGV
Specific function: Participates In Initiation And Elongation During Chromosome Replication; It Exhibits DNA-Dependent ATPase Activity And Contains Distinct Active Sites For ATP Binding, DNA Binding, And Interaction With DNAc Protein, Primase, And Other Prepriming Proteins.
COG id: COG0305
COG function: function code L; Replicative DNA helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 SF4 helicase domain [H]
Homologues:
Organism=Escherichia coli, GI1790486, Length=245, Percent_Identity=51.4285714285714, Blast_Score=247, Evalue=3e-66,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR007692 - InterPro: IPR007694 - InterPro: IPR007693 - InterPro: IPR016136 [H]
Pfam domain/function: PF00772 DnaB; PF03796 DnaB_C [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 94084; Mature: 94084
Theoretical pI: Translated: 6.33; Mature: 6.33
Prosite motif: PS50817 INTEIN_N_TER ; PS50818 INTEIN_C_TER ; PS50819 INTEIN_ENDONUCLEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELTPRVPPHSNEAEISVLGSILLDNDTLIGLGDTLTPEMFYREGHRKIFAAMRALQERG CCCCCCCCCCCCCCHHHEEEHHEECCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCC EPVDLVTLSEHLRVQGQLDEVGGLTYLIGLSEQVPTAAYAEHYARIVQEKHTLRQLISAS CCEEEEEEHHHHEECCCHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC GKAMQLAYEGQLPLEDLLDRAEKMIFEVAEQKKKSEAFQAMGEVVHETFEYITLLHQNRG CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC IPDGVSSGFRDLDEQISGFQKGSLNVLAARPSMGKCVTADTLIDVPGTGERITVEAFVRR CCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEECCEEEECCCCCCEEEHHHHHHC QWPVVLSVSADGRVRESRVGAWIDSGVKPVRRVTTRTGRVVETTPHHPFLGVDGWTPLYD CCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCEEEECCCCCEECCCCCCCEEE LKVGDRIAVPRAVPVFGQRDVLSAERVRLLAYLLAEGGLTQSGPRWTNADPELVQDFRAC ECCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH LAAEFPEVEMMADAWTGIDDRLSRRWQPGERQDRPNPLIGWLRELGVWGQPTDAKRFPAV HHCCCCCHHHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEE VWTFTRPSLAAFLRVLLSCDGTLSTLAGKARIEFTVASEGLARDVHHALVRFGIVSKLWR EEEECCHHHHHHHHHHHHCCCCHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH KGERSWRVEITDPRSVADYQLQIGWLGEKALRTIPVSAETRSHVGHPPAGAWAHVRRAAG CCCCCEEEEECCCCCCCCEEEEEEECCCHHHHCCCCCCCHHHCCCCCCCCHHHHHHHHHC ERTASGFNAHTGRSLPQSRAARYAAVLDDTQLTLLGSDALYWDDIVSIEDVGERQVYDLT CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHCCCCHHHCCCCEEEEEE VPGDANFIAADICLHNTAFALSIAQNVALRGEKTVAVFSLEMPAVQLALRMLCSEARVDM CCCCCCEEEEHHHHCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHH NRIRSGQLNERDFERLAHAAGRLADAPMIIDDEPDLTLNALRSKLRRIAAQHGQLGLVVI HHHCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCEEHHHH DYLQLMSGGKNSGGSDNRQQEISTISRGLKGLAREMEVPIIVLSQLSRAVEQRPNHRPML HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHH SDLRESGAIEQDADIVMFIYRDEYYNKETDQQGIAEIIIGKQRNGPVGTVKLQFHSAHVR HHHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEEEEEEEEE FNDLAPEGV ECCCCCCCC >Mature Secondary Structure MELTPRVPPHSNEAEISVLGSILLDNDTLIGLGDTLTPEMFYREGHRKIFAAMRALQERG CCCCCCCCCCCCCCHHHEEEHHEECCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCC EPVDLVTLSEHLRVQGQLDEVGGLTYLIGLSEQVPTAAYAEHYARIVQEKHTLRQLISAS CCEEEEEEHHHHEECCCHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC GKAMQLAYEGQLPLEDLLDRAEKMIFEVAEQKKKSEAFQAMGEVVHETFEYITLLHQNRG CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC IPDGVSSGFRDLDEQISGFQKGSLNVLAARPSMGKCVTADTLIDVPGTGERITVEAFVRR CCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEECCEEEECCCCCCEEEHHHHHHC QWPVVLSVSADGRVRESRVGAWIDSGVKPVRRVTTRTGRVVETTPHHPFLGVDGWTPLYD CCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCEEEECCCCCEECCCCCCCEEE LKVGDRIAVPRAVPVFGQRDVLSAERVRLLAYLLAEGGLTQSGPRWTNADPELVQDFRAC ECCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH LAAEFPEVEMMADAWTGIDDRLSRRWQPGERQDRPNPLIGWLRELGVWGQPTDAKRFPAV HHCCCCCHHHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEE VWTFTRPSLAAFLRVLLSCDGTLSTLAGKARIEFTVASEGLARDVHHALVRFGIVSKLWR EEEECCHHHHHHHHHHHHCCCCHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH KGERSWRVEITDPRSVADYQLQIGWLGEKALRTIPVSAETRSHVGHPPAGAWAHVRRAAG CCCCCEEEEECCCCCCCCEEEEEEECCCHHHHCCCCCCCHHHCCCCCCCCHHHHHHHHHC ERTASGFNAHTGRSLPQSRAARYAAVLDDTQLTLLGSDALYWDDIVSIEDVGERQVYDLT CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHCCCCHHHCCCCEEEEEE VPGDANFIAADICLHNTAFALSIAQNVALRGEKTVAVFSLEMPAVQLALRMLCSEARVDM CCCCCCEEEEHHHHCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHH NRIRSGQLNERDFERLAHAAGRLADAPMIIDDEPDLTLNALRSKLRRIAAQHGQLGLVVI HHHCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCEEHHHH DYLQLMSGGKNSGGSDNRQQEISTISRGLKGLAREMEVPIIVLSQLSRAVEQRPNHRPML HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHH SDLRESGAIEQDADIVMFIYRDEYYNKETDQQGIAEIIIGKQRNGPVGTVKLQFHSAHVR HHHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEEEEEEEEE FNDLAPEGV ECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377; 1312531 [H]