BacMap

Definition	Deinococcus geothermalis DSM 11300, complete genome.
Accession	NC_008025
Length	2,467,205

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The map label for this gene is gra-orf5 [H]

Identifier: 94985429

GI number: 94985429

Start: 1412420

End: 1413391

Strand: Reverse

Name: gra-orf5 [H]

Synonym: Dgeo_1328

Alternate gene names: 94985429

Gene position: 1413391-1412420 (Counterclockwise)

Preceding gene: 94985432

Following gene: 94985427

Centisome position: 57.29

GC content: 70.78

Gene sequence:

>972_bases
ATGCTGGCAGCTGGCCTCGGTGCCCTCGCGGCCCGGCGTGTTCTGAAGCCCTCCTACGACCTGGGCGGCAAGAGCGTCCT
GATCTCGGGCGGCTCGCGCGGCCTGGGTCTCGCCCTCGCCCACGAGTTCACCGCACGCGGCGCGCGGGTGATGCTGCTGG
CCCGCGACCCGAACGAACTCGCCCGCGCGGCGGCGGGCCTGCGGGCAGAGGGGGGCACCGTTCATACCGTCGTTGGGGAC
GTGACGGTGACGGCAGACCTCCTGCGCGCGGTCGAGGAAACGGCCCGTGTGTACGGCGGCCTGGACGTGCTGGCCCACGT
GGCGGGCGTCATCCAGGTGGGGCCGCTGGAGAACATGACCGAGGCGGACTTCCGCGAGATCATGGAGGTGAACGCCTTTG
CCGTCTTGCGCCTCACCCGCGTGGCCCTGCCGCTGCTGCGCGCCGCGCGGGGCCGCGTCCTCATCGTCTCGTCGGTGGGC
GGGAAGGTGGCGGTGCCCCACCTCGCCCCCTACACCTTCAGCAAGTTCGCGGTGACTGGGCTGGGTCAGGCCCTGCGCGC
TGAACTCGCCCGTGAAGGCGTGAGCGTGACCACCGTCCTGCCCTCGCTGATGCGGACCGGCAGCGCCCGCCATGCCCGGG
TGAAGGGCCAGCAGCGCAAGGAGTACGCTCTCTTTGCCACACTCGACAATTTCCCGCTTGTGTCGCTGGACGCGGACAAG
GCTGCCCGCCGCATCGTGAACGCCCTGGTGCGCGCAGAGGCCGAGGCAATGATTGGCGGTCCCGCGCTGATCCTGCGGTA
TGCACAGGCCCTCGCCCCGCAGCTCACCGCCGACGTGTTGGCCCTGACGAACCGCCTCCTGCCCGGCCCGAGCACCAGCA
ACCGCGGGATGCCGGGTGCGAGTGTCGAGACGGCCCTCACCCGCGAAAATCTCATCAAGCGCGTGGCCGAGAAGGCGTGG
AACGAGCGCTGA

Upstream 100 bases:

>100_bases
GCTCGAAGAGGGTGGGATCGGGGTTGGTCATGCCTTCACTTTAAGGATTCCTGGCGCCGCAGGCAGGCACACTCAGGGTA
TGCGACTCCCGAAACGTCTG

Downstream 100 bases:

>100_bases
ACAAGTGCTGAACAAGTGCTGAACAAGTGCTGTAAGTTGCCGCTGCCGGGGGAGGTGGGAGCGTGGAGCCGGCCTCAACC
GACTCGCTTCACGCCTGCCA

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: ORF5 [H]

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MLAAGLGALAARRVLKPSYDLGGKSVLISGGSRGLGLALAHEFTARGARVMLLARDPNELARAAAGLRAEGGTVHTVVGD
VTVTADLLRAVEETARVYGGLDVLAHVAGVIQVGPLENMTEADFREIMEVNAFAVLRLTRVALPLLRAARGRVLIVSSVG
GKVAVPHLAPYTFSKFAVTGLGQALRAELAREGVSVTTVLPSLMRTGSARHARVKGQQRKEYALFATLDNFPLVSLDADK
AARRIVNALVRAEAEAMIGGPALILRYAQALAPQLTADVLALTNRLLPGPSTSNRGMPGASVETALTRENLIKRVAEKAW
NER

Sequences:

>Translated_323_residues
MLAAGLGALAARRVLKPSYDLGGKSVLISGGSRGLGLALAHEFTARGARVMLLARDPNELARAAAGLRAEGGTVHTVVGD
VTVTADLLRAVEETARVYGGLDVLAHVAGVIQVGPLENMTEADFREIMEVNAFAVLRLTRVALPLLRAARGRVLIVSSVG
GKVAVPHLAPYTFSKFAVTGLGQALRAELAREGVSVTTVLPSLMRTGSARHARVKGQQRKEYALFATLDNFPLVSLDADK
AARRIVNALVRAEAEAMIGGPALILRYAQALAPQLTADVLALTNRLLPGPSTSNRGMPGASVETALTRENLIKRVAEKAW
NER
>Mature_323_residues
MLAAGLGALAARRVLKPSYDLGGKSVLISGGSRGLGLALAHEFTARGARVMLLARDPNELARAAAGLRAEGGTVHTVVGD
VTVTADLLRAVEETARVYGGLDVLAHVAGVIQVGPLENMTEADFREIMEVNAFAVLRLTRVALPLLRAARGRVLIVSSVG
GKVAVPHLAPYTFSKFAVTGLGQALRAELAREGVSVTTVLPSLMRTGSARHARVKGQQRKEYALFATLDNFPLVSLDADK
AARRIVNALVRAEAEAMIGGPALILRYAQALAPQLTADVLALTNRLLPGPSTSNRGMPGASVETALTRENLIKRVAEKAW
NER

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32455239, Length=200, Percent_Identity=31.5, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI5031765, Length=200, Percent_Identity=31.5, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI142976729, Length=193, Percent_Identity=30.0518134715026, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI40548397, Length=251, Percent_Identity=31.4741035856574, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI214010158, Length=251, Percent_Identity=31.4741035856574, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI214010156, Length=251, Percent_Identity=31.4741035856574, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI22758144, Length=251, Percent_Identity=31.4741035856574, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI210032110, Length=195, Percent_Identity=26.1538461538462, Blast_Score=89, Evalue=7e-18,
Organism=Homo sapiens, GI32483357, Length=210, Percent_Identity=29.5238095238095, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI150247226, Length=199, Percent_Identity=36.6834170854271, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI20149619, Length=189, Percent_Identity=29.1005291005291, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI4503817, Length=202, Percent_Identity=27.7227722772277, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI22507405, Length=215, Percent_Identity=31.1627906976744, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI19743808, Length=192, Percent_Identity=33.8541666666667, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI44680136, Length=200, Percent_Identity=28.5, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI44680133, Length=200, Percent_Identity=28.5, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI17738292, Length=200, Percent_Identity=28.5, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI33667109, Length=195, Percent_Identity=30.7692307692308, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI119392083, Length=231, Percent_Identity=32.9004329004329, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI5031737, Length=191, Percent_Identity=30.8900523560209, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI157739938, Length=194, Percent_Identity=28.8659793814433, Blast_Score=79, Evalue=8e-15,
Organism=Homo sapiens, GI126723191, Length=202, Percent_Identity=29.7029702970297, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI4504503, Length=184, Percent_Identity=34.7826086956522, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI7706318, Length=192, Percent_Identity=27.0833333333333, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI38348362, Length=206, Percent_Identity=30.5825242718447, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI38424085, Length=209, Percent_Identity=30.622009569378, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI7657478, Length=185, Percent_Identity=32.972972972973, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI59889578, Length=165, Percent_Identity=31.5151515151515, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI50726952, Length=189, Percent_Identity=33.8624338624339, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI40807363, Length=202, Percent_Identity=27.2277227722772, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI223718074, Length=181, Percent_Identity=33.1491712707182, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI126723750, Length=214, Percent_Identity=26.1682242990654, Blast_Score=65, Evalue=1e-10,
Organism=Escherichia coli, GI87082100, Length=216, Percent_Identity=31.4814814814815, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787335, Length=189, Percent_Identity=29.1005291005291, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786701, Length=185, Percent_Identity=32.4324324324324, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1790717, Length=189, Percent_Identity=26.984126984127, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1789378, Length=189, Percent_Identity=26.984126984127, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1789057, Length=181, Percent_Identity=27.6243093922652, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787526, Length=197, Percent_Identity=27.9187817258883, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17560676, Length=182, Percent_Identity=29.6703296703297, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71994600, Length=206, Percent_Identity=31.0679611650485, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI71994604, Length=212, Percent_Identity=32.0754716981132, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17567345, Length=246, Percent_Identity=23.5772357723577, Blast_Score=85, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI71997402, Length=177, Percent_Identity=33.8983050847458, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI115534660, Length=288, Percent_Identity=25.6944444444444, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI193210355, Length=262, Percent_Identity=27.0992366412214, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17564282, Length=238, Percent_Identity=27.3109243697479, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17508895, Length=260, Percent_Identity=26.5384615384615, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI193203115, Length=199, Percent_Identity=30.6532663316583, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17544670, Length=231, Percent_Identity=28.1385281385281, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI32563809, Length=194, Percent_Identity=26.8041237113402, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17507613, Length=194, Percent_Identity=26.8041237113402, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI193203117, Length=198, Percent_Identity=30.3030303030303, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17557780, Length=211, Percent_Identity=26.5402843601896, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17562904, Length=214, Percent_Identity=27.1028037383178, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17531453, Length=197, Percent_Identity=28.4263959390863, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17559104, Length=218, Percent_Identity=27.5229357798165, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI71982365, Length=190, Percent_Identity=25.7894736842105, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=195, Percent_Identity=28.2051282051282, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=197, Percent_Identity=27.9187817258883, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17562990, Length=195, Percent_Identity=28.2051282051282, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17562906, Length=215, Percent_Identity=27.906976744186, Blast_Score=64, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17563726, Length=214, Percent_Identity=26.1682242990654, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=240, Percent_Identity=26.6666666666667, Blast_Score=74, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6322226, Length=191, Percent_Identity=27.2251308900524, Blast_Score=67, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6322861, Length=189, Percent_Identity=25.3968253968254, Blast_Score=63, Evalue=7e-11,
Organism=Drosophila melanogaster, GI21358495, Length=268, Percent_Identity=30.9701492537313, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24644339, Length=207, Percent_Identity=35.2657004830918, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI281364892, Length=241, Percent_Identity=28.6307053941909, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24640492, Length=247, Percent_Identity=27.5303643724696, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI21356301, Length=193, Percent_Identity=29.5336787564767, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI21355319, Length=253, Percent_Identity=29.2490118577075, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI28571526, Length=203, Percent_Identity=31.0344827586207, Blast_Score=85, Evalue=8e-17,
Organism=Drosophila melanogaster, GI21357041, Length=210, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI23397609, Length=191, Percent_Identity=31.413612565445, Blast_Score=78, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24649181, Length=284, Percent_Identity=27.8169014084507, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24663911, Length=196, Percent_Identity=31.1224489795918, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI28571387, Length=191, Percent_Identity=30.8900523560209, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24644337, Length=211, Percent_Identity=33.175355450237, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24648693, Length=192, Percent_Identity=30.7291666666667, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI21355889, Length=192, Percent_Identity=30.7291666666667, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24641388, Length=192, Percent_Identity=29.6875, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24643142, Length=187, Percent_Identity=30.4812834224599, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21357673, Length=195, Percent_Identity=27.1794871794872, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 34071; Mature: 34071

Theoretical pI: Translated: 11.01; Mature: 11.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAAGLGALAARRVLKPSYDLGGKSVLISGGSRGLGLALAHEFTARGARVMLLARDPNEL
CCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCHHHH
ARAAAGLRAEGGTVHTVVGDVTVTADLLRAVEETARVYGGLDVLAHVAGVIQVGPLENMT
HHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEECCCCCCC
EADFREIMEVNAFAVLRLTRVALPLLRAARGRVLIVSSVGGKVAVPHLAPYTFSKFAVTG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEECCCCCCCHHHHHHHHH
LGQALRAELAREGVSVTTVLPSLMRTGSARHARVKGQQRKEYALFATLDNFPLVSLDADK
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCEEEEEEECCCCEEEECHHH
AARRIVNALVRAEAEAMIGGPALILRYAQALAPQLTADVLALTNRLLPGPSTSNRGMPGA
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
SVETALTRENLIKRVAEKAWNER
HHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLAAGLGALAARRVLKPSYDLGGKSVLISGGSRGLGLALAHEFTARGARVMLLARDPNEL
CCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCHHHH
ARAAAGLRAEGGTVHTVVGDVTVTADLLRAVEETARVYGGLDVLAHVAGVIQVGPLENMT
HHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEECCCCCCC
EADFREIMEVNAFAVLRLTRVALPLLRAARGRVLIVSSVGGKVAVPHLAPYTFSKFAVTG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEECCCCCCCHHHHHHHHH
LGQALRAELAREGVSVTTVLPSLMRTGSARHARVKGQQRKEYALFATLDNFPLVSLDADK
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCEEEEEEECCCCEEEECHHH
AARRIVNALVRAEAEAMIGGPALILRYAQALAPQLTADVLALTNRLLPGPSTSNRGMPGA
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
SVETALTRENLIKRVAEKAWNER
HHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2583128; 7476861; 9831526 [H]