Definition Deinococcus geothermalis DSM 11300, complete genome.
Accession NC_008025
Length 2,467,205

Click here to switch to the map view.

The map label for this gene is ycjU [C]

Identifier: 94985216

GI number: 94985216

Start: 1182856

End: 1183542

Strand: Reverse

Name: ycjU [C]

Synonym: Dgeo_1113

Alternate gene names: 94985216

Gene position: 1183542-1182856 (Counterclockwise)

Preceding gene: 94985218

Following gene: 94985215

Centisome position: 47.97

GC content: 69.0

Gene sequence:

>687_bases
ATGAAGACGCCACAGCGCATCCAGGCCGTCCTGTTTGACCGTGACGACACGCTGGCTTTGACCGACCCGGAGGTTTACCA
CGCGGCGGCGCGCTGGATCGCCGAACACTTTGGCCTGGACGCGCGGCGGGCCGGGGAAGCGCTGCGGGCGCAGTGGCAGG
AACGGGCCTTCTCGTGGTGGGACCTGCGAACCCTCGAGGAGGAGGACGCCTTTTGGCGGCAGTACGGCGAGGAACTGGCT
GGGCGGCTGGGCCTCGATCCGGTCCATGCCGCCGAGCTGCTGACGGCCTATCCCTACGAGCGGTACCTGAAGCCGGTGCC
GGGCGCACGGGAGGTGCTGACCGAACTGCGCGCGCGCGGCCTGAGGATCGGGGTGCTGAGCAACACCTTGCCGAGCATTG
ACCGGACCCTCACGGCGCTGGGGTTGGCGGACTTGGTGGATGTGGCGGTGGCGAGCTGCACGGCTGGAGTGCACAAGCCG
GAGCCGGGAGCCTTTGAATACGCGCTCACGAGGCTCGGGCTGCCCGCCGAAACGGTGCTGTTTGTGGATGACCGGCCTGA
GAACGTCGCAGCCGCGCGCGCGCTGGGGCTGCAGGCGGTGCAGATCGACCTGACAGGTGAAGCGCCAGACGCGCTGCATG
ACCTGTGGGCGGTCCTGGAGCTGGTCGGGGAACCGGTGAGGCCGTGA

Upstream 100 bases:

>100_bases
ATCGAGCGCCCGCCAGGCCAGAACCACAAGTGCATCGTTTCACGATCCATCAGGACGTGAAGGTCTTCTTCTGTGCGGGG
AACGCTCTAGAATCTGACGG

Downstream 100 bases:

>100_bases
GCCTGATGCTGATAGACGGCCACCTGGACCTCGCCTACAACGCCGCGCGCGGGCGCGATCTCACCCTCCCGCTGGCGGCG
CTGCGGAAAGCCGATTCGGT

Product: HAD family hydrolase

Products: Beta-D-Glucose 6- Phosphate. [C]

Alternate protein names: Haloacid Dehalogenase Type II; HAD Family Hydrolase; HAD-Superfamily Hydrolase Subfamily IA; CbbY/CbbZ/GpH/YieH Family Hydrolase; Hydrolase Related 2-Haloalkanoic Acid Dehalogenase

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MKTPQRIQAVLFDRDDTLALTDPEVYHAAARWIAEHFGLDARRAGEALRAQWQERAFSWWDLRTLEEEDAFWRQYGEELA
GRLGLDPVHAAELLTAYPYERYLKPVPGAREVLTELRARGLRIGVLSNTLPSIDRTLTALGLADLVDVAVASCTAGVHKP
EPGAFEYALTRLGLPAETVLFVDDRPENVAAARALGLQAVQIDLTGEAPDALHDLWAVLELVGEPVRP

Sequences:

>Translated_228_residues
MKTPQRIQAVLFDRDDTLALTDPEVYHAAARWIAEHFGLDARRAGEALRAQWQERAFSWWDLRTLEEEDAFWRQYGEELA
GRLGLDPVHAAELLTAYPYERYLKPVPGAREVLTELRARGLRIGVLSNTLPSIDRTLTALGLADLVDVAVASCTAGVHKP
EPGAFEYALTRLGLPAETVLFVDDRPENVAAARALGLQAVQIDLTGEAPDALHDLWAVLELVGEPVRP
>Mature_228_residues
MKTPQRIQAVLFDRDDTLALTDPEVYHAAARWIAEHFGLDARRAGEALRAQWQERAFSWWDLRTLEEEDAFWRQYGEELA
GRLGLDPVHAAELLTAYPYERYLKPVPGAREVLTELRARGLRIGVLSNTLPSIDRTLTALGLADLVDVAVASCTAGVHKP
EPGAFEYALTRLGLPAETVLFVDDRPENVAAARALGLQAVQIDLTGEAPDALHDLWAVLELVGEPVRP

Specific function: Reversible Transformation Of Glucose 6-Phosphate And Beta-Glucose 1-Phosphate (By Similarity). [C]

COG id: COG1011

COG function: function code R; Predicted hydrolase (HAD superfamily)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI48976061, Length=227, Percent_Identity=28.6343612334802, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI211971008, Length=215, Percent_Identity=27.906976744186, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24639695, Length=248, Percent_Identity=29.0322580645161, Blast_Score=75, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 5.4.2.6 [C]

Molecular weight: Translated: 25255; Mature: 25255

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTPQRIQAVLFDRDDTLALTDPEVYHAAARWIAEHFGLDARRAGEALRAQWQERAFSWW
CCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHH
DLRTLEEEDAFWRQYGEELAGRLGLDPVHAAELLTAYPYERYLKPVPGAREVLTELRARG
HHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHCC
LRIGVLSNTLPSIDRTLTALGLADLVDVAVASCTAGVHKPEPGAFEYALTRLGLPAETVL
EEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCEEE
FVDDRPENVAAARALGLQAVQIDLTGEAPDALHDLWAVLELVGEPVRP
EECCCCCHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKTPQRIQAVLFDRDDTLALTDPEVYHAAARWIAEHFGLDARRAGEALRAQWQERAFSWW
CCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHH
DLRTLEEEDAFWRQYGEELAGRLGLDPVHAAELLTAYPYERYLKPVPGAREVLTELRARG
HHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHCC
LRIGVLSNTLPSIDRTLTALGLADLVDVAVASCTAGVHKPEPGAFEYALTRLGLPAETVL
EEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCEEE
FVDDRPENVAAARALGLQAVQIDLTGEAPDALHDLWAVLELVGEPVRP
EECCCCCHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Beta-D-Glucose 1-Phosphate [C]

Specific reaction: Beta-D-Glucose 1-Phosphate = Beta-D-Glucose 6- Phosphate. [C]

General reaction: Group transfer (intramolecular phosphate group isomerization [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA