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The map label for this gene is ykoM [H]

Identifier: 94985048

GI number: 94985048

Start: 1006792

End: 1007286

Strand: Reverse

Name: ykoM [H]

Synonym: Dgeo_0942

Alternate gene names: 94985048

Gene position: 1007286-1006792 (Counterclockwise)

Preceding gene: 94985049

Following gene: 94985047

Centisome position: 40.83

GC content: 68.28

Gene sequence:

>495_bases
ATGCCCACCCGCTACACAGGTCTGCCGGAGGAACGCGCCGCGCTCGACGCTTACATCAAGCTGTGGCGCGCGGCGCACGC
GGTCGAGGTGGCCGCGAACCGGCATCTGGCGGACCACGGGCTGACCGTCAGTCAGTTCGGCGTGCTGGAGGCGCTCTACC
ACCTCGGCCCCCTCAGCCAGCGCCAACTGGCCGACAAGATTCTGCGCTCCAGCGGCAACCTCACCATGGTCATCGACAAC
CTGGAGCGCAATGGCCTGGTCCGCCGTGAGCGCGACCCGCAAGACCGCCGGGTGATGAAGGTCTTCCTCACTGGGGCAGG
TGAGGCGCTAATCACCCGCGTGCTGCCCGACCACGTACGCGGCATCCAGGACGTGTTCAGCGGCCTGACCCCGGAGGAGC
TGAACCAGCTCGCCGCCCTGACGCGCAAGCTCGGTCTAGGACTCACCAGCACTGCGGCGGCGGAAGCGCCGGTCCGACGC
AGACAGCACACCTGA

Upstream 100 bases:

>100_bases
AGGAATACCGGGCGGGGCACTGAGCGGAAAAAAAGCCCACTGAGCTGGGTCGCCCTCCTCAGCTTGATTTTCTGGCCCTC
CAGCCCCGACCATAGCGCTC

Downstream 100 bases:

>100_bases
CGCACCGGCCGCAGGCGGTCGGTGGTCCAGCTCACTCCGAATCATTTAACATTAAGTTATTTTGGGGGGTATGGCAAACA
CCCTCTCGCCCATTCCCGGC

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MPTRYTGLPEERAALDAYIKLWRAAHAVEVAANRHLADHGLTVSQFGVLEALYHLGPLSQRQLADKILRSSGNLTMVIDN
LERNGLVRRERDPQDRRVMKVFLTGAGEALITRVLPDHVRGIQDVFSGLTPEELNQLAALTRKLGLGLTSTAAAEAPVRR
RQHT

Sequences:

>Translated_164_residues
MPTRYTGLPEERAALDAYIKLWRAAHAVEVAANRHLADHGLTVSQFGVLEALYHLGPLSQRQLADKILRSSGNLTMVIDN
LERNGLVRRERDPQDRRVMKVFLTGAGEALITRVLPDHVRGIQDVFSGLTPEELNQLAALTRKLGLGLTSTAAAEAPVRR
RQHT
>Mature_163_residues
PTRYTGLPEERAALDAYIKLWRAAHAVEVAANRHLADHGLTVSQFGVLEALYHLGPLSQRQLADKILRSSGNLTMVIDNL
ERNGLVRRERDPQDRRVMKVFLTGAGEALITRVLPDHVRGIQDVFSGLTPEELNQLAALTRKLGLGLTSTAAAEAPVRRR
QHT

Specific function: Transcription Factor That Activates Expression Of Genes Such As Molecular Chaperones (Grol, Gros, Dnak, Grpe, And Cbpa), Proteins Involved In Acid Resistance (Hdea, Hdeb, And Gada), The Starvation Lipoprotein Slp, Virulence Protein Hlye/Clya. Represses Ex

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 18176; Mature: 18045

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTRYTGLPEERAALDAYIKLWRAAHAVEVAANRHLADHGLTVSQFGVLEALYHLGPLSQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCH
RQLADKILRSSGNLTMVIDNLERNGLVRRERDPQDRRVMKVFLTGAGEALITRVLPDHVR
HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
GIQDVFSGLTPEELNQLAALTRKLGLGLTSTAAAEAPVRRRQHT
HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
PTRYTGLPEERAALDAYIKLWRAAHAVEVAANRHLADHGLTVSQFGVLEALYHLGPLSQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCH
RQLADKILRSSGNLTMVIDNLERNGLVRRERDPQDRRVMKVFLTGAGEALITRVLPDHVR
HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
GIQDVFSGLTPEELNQLAALTRKLGLGLTSTAAAEAPVRRRQHT
HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]