| Definition | Deinococcus geothermalis DSM 11300, complete genome. |
|---|---|
| Accession | NC_008025 |
| Length | 2,467,205 |
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The map label for this gene is 94985030
Identifier: 94985030
GI number: 94985030
Start: 986329
End: 988881
Strand: Reverse
Name: 94985030
Synonym: Dgeo_0923
Alternate gene names: NA
Gene position: 988881-986329 (Counterclockwise)
Preceding gene: 94985031
Following gene: 94985005
Centisome position: 40.08
GC content: 65.8
Gene sequence:
>2553_bases ATGGATAAGCCCACCACCGAGCAACTGCTGCCGCCCAGGCCCCAAGCCCGCCCGCGCCTCTACGCCTACAGCATCGACGA CGCGGCGCACGCGGGCCTGCTGAAGATCGGCCAGACCACCCGCGACGTGCGGCAGCGGGTGGCCGAACAGCTCCGGACGG CGGCCATCAAGAACTACCGCATCGAGCTGGACGAAGACGCCACCCGCGCCGATGGCAGTATCATCACCGACCATGAGCTG CGCGCGGCGCTGCGGCGCAAGGGCCATGAGGTCGTCACGCTCGAGTGGGTGCGCTGCACCGTTGCCGACGTCCGGGCCGT GCTCCATGAACTGCGCACGGGTAAGCCGGTCAGCGGCGCGCGCCACCAGACCTTCGGGCTGCGCCAGGAGCAAGAGGAGG CGGTCGAGAAGACGCTGGCCTACTTCCGTTCGATCTGGGCCGAAGACAAGGACGCCGCCCCGCGCTTCCTGTGGAACGCC AAGATGCGCTTTGGCAAGACCTTCACCACCTACCAGCTCGCTCGGCGGCTGGGCGCCAGGCGCGTGCTGATCGTGACCTT CAAGCCGGCGGTGGAGGACGCCTGGCAGACCGACCTGGAAAGCCACGTGGACTTCGAGGGCTGGCAGTATCTGTCGCGCA AATCCGAGCGCGACCCGACGCAGATCGACCCGCACAAGCCGGTGGTCTATTTCGGCTCCTTCCAGGACCTGCTCGGGCGC GACAGACAGGGCAACATCAAGCCCAAGAACGAGTGGATCCACACCGTCAACTGGGACCTGGTGGTGTTCGACGAATACCA CTTCGGCGCCTGGCGCGACACGGCGCGGGAGCTGTTCGAGGGCGAGGAGGACGCCGCAAAGGAACTGCAGCAGGAGTATG CCGCCGGGCTGGAGACGGTGAACGAGGACCTGGGCGAGCTGTCGGTCAAGGAAGCCGAATTCCTGCCGATCACCACGCGG GCCTACCTCTACCTCTCCGGCACGCCGTTCCGGGCGCTCTCGACCGGCGAGTTCATCGAGGAGCAGATCTTCAACTGGAC CTACACCGACGAGCAGCGGGCTAAGGGGCGCTTCGCCGAGGAGCACCCGGGGGAGAAGAACCCCTACGCCGCGCTGCCCG AGCTGCGGCTCCTCACCTACCAGATGCCCGACGAACTGCTGGCGGTGGCCAGCGGCGGCGAGTTCGACGAGTTCGACCTG AACGAATTTTTCGCCGCTACCGGAACGGGTGAACAGGCGCAGTTCAAGCACAAGGACGAAGTGCAGAAGTGGCTGGACAT CCTGCGTGGCCAGTACCTGCCCAGGGCGTCCGAATACCTGAAGACCGGCACGCGCCCACCCTTCCCGTACGCCGACGTGC GGCTGCTGCCCTACCTCCAGCACTCGTTCTGGTTCCTGCCGAGTGTGGCGGCCTGCCAGGCCATGGCCAACCTGCTGGCC GAGCGGCACAACGTCTTCTGGCACGACTACACGGTGGTGGTGGCCGCCGGGGCCGGGGCGGGCATCGGACTAGACGCGCT GCCGCCCGTGCGCCGGGCCATCGGCGGCGGCTTCGACACCAAGACGATCACGCTCTCGTGTGGCAAGCTCACCACCGGCG TCACCGTGCCGCAGTGGTCGGCGATCCTGATGCTGCGCAACCTCCAGTCGCCGGAGACCTACTTTCAGGCGGCGTTTCGC GTGCAGTCGCCGTGGGTCATCGCGAACCCGGAGGGCGACGACCCGAACGCCGAGGTGATCGTCAAGCCGGTCTGTTTTGT TTTCGACTTCGCGCCGACGCGGGCGCTGCGTCAGCTTTCCGAGTACGCGATCGGCCTCGCGCCCCACGAGCCGAACCCCG AGCAGGCGGTGGCCGACCTCGTGTCATTCTTGCCGGTCCTCGCCTACGACGGCGCGAACATGACCCAGATCGACGCCGGC GGCATCCTCGACATCGCCATGGCCGGCACCTCGGCCACGCTCCTGGCGCGCAAATGGGAGAGCGCCCTGCTGGTGAACGT GGACAACGACACCCTGCGCCGCGTGCTGAACAGCCCTGAGGCGCTGGCCGCCGTGGAGCGCATCGAGGGCTGGCGCGCGC TGGGCGACAACATCATTGAAACGGTCATCAACCAGAGCGAGAAGATCAAAGGGCTGAAAGGCAAGGCCAAAGAACGCGAC CTCACCCCCGCAGAGAAAAAAGAGCTGTCGGACGAGGAGAAGGAATACAAGAACAAGCGCAAGCAGATTCAGGAGAAGCT GATCAAGTTCGCCACGCGGATTCCGGCCTTCATGTACCTGACGGATTTCCGCGAGAACACCTTGCAGGACATCATCACCA AGCTCGAGCCGGAGCTGTTTCTGACCGTGACCGGCTTGACCGTCGAGGACTTTCACTTGCTGGTGCGGCTCAAGGTCTTC AACACCGAGCAGATGAACGCGGCGGTGTTCGCCTTCCGGCGCTACGAGGACGCCTCGCTGCGCTATGCCGGCATCGACAG CCACCCCGGGCTGACGCACTATGGGCTGTACGACACGGTGGTGGCGCGGGAGGAGAGCCTACTCCGGTCTTAA
Upstream 100 bases:
>100_bases GACCGCACCTGGACCGACGAGATGCTTTACGAGAAGTACGGCATCACGCCGGAGGAGCAGGCCTTTATCGAGTCCATGAT TCGCCCCATGGACGGTGGCA
Downstream 100 bases:
>100_bases TCAAGCACCTGTCCAACAGGAAGCGGAGGCCCACACCTCCGCTTCTCTGCGCTCGCCTCTCCCCTACCTTCCCGCCAATG TCCCCCAGATCGCCGGGTTG
Product: type III restriction system endonuclease, putative
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 850; Mature: 850
Protein sequence:
>850_residues MDKPTTEQLLPPRPQARPRLYAYSIDDAAHAGLLKIGQTTRDVRQRVAEQLRTAAIKNYRIELDEDATRADGSIITDHEL RAALRRKGHEVVTLEWVRCTVADVRAVLHELRTGKPVSGARHQTFGLRQEQEEAVEKTLAYFRSIWAEDKDAAPRFLWNA KMRFGKTFTTYQLARRLGARRVLIVTFKPAVEDAWQTDLESHVDFEGWQYLSRKSERDPTQIDPHKPVVYFGSFQDLLGR DRQGNIKPKNEWIHTVNWDLVVFDEYHFGAWRDTARELFEGEEDAAKELQQEYAAGLETVNEDLGELSVKEAEFLPITTR AYLYLSGTPFRALSTGEFIEEQIFNWTYTDEQRAKGRFAEEHPGEKNPYAALPELRLLTYQMPDELLAVASGGEFDEFDL NEFFAATGTGEQAQFKHKDEVQKWLDILRGQYLPRASEYLKTGTRPPFPYADVRLLPYLQHSFWFLPSVAACQAMANLLA ERHNVFWHDYTVVVAAGAGAGIGLDALPPVRRAIGGGFDTKTITLSCGKLTTGVTVPQWSAILMLRNLQSPETYFQAAFR VQSPWVIANPEGDDPNAEVIVKPVCFVFDFAPTRALRQLSEYAIGLAPHEPNPEQAVADLVSFLPVLAYDGANMTQIDAG GILDIAMAGTSATLLARKWESALLVNVDNDTLRRVLNSPEALAAVERIEGWRALGDNIIETVINQSEKIKGLKGKAKERD LTPAEKKELSDEEKEYKNKRKQIQEKLIKFATRIPAFMYLTDFRENTLQDIITKLEPELFLTVTGLTVEDFHLLVRLKVF NTEQMNAAVFAFRRYEDASLRYAGIDSHPGLTHYGLYDTVVAREESLLRS
Sequences:
>Translated_850_residues MDKPTTEQLLPPRPQARPRLYAYSIDDAAHAGLLKIGQTTRDVRQRVAEQLRTAAIKNYRIELDEDATRADGSIITDHEL RAALRRKGHEVVTLEWVRCTVADVRAVLHELRTGKPVSGARHQTFGLRQEQEEAVEKTLAYFRSIWAEDKDAAPRFLWNA KMRFGKTFTTYQLARRLGARRVLIVTFKPAVEDAWQTDLESHVDFEGWQYLSRKSERDPTQIDPHKPVVYFGSFQDLLGR DRQGNIKPKNEWIHTVNWDLVVFDEYHFGAWRDTARELFEGEEDAAKELQQEYAAGLETVNEDLGELSVKEAEFLPITTR AYLYLSGTPFRALSTGEFIEEQIFNWTYTDEQRAKGRFAEEHPGEKNPYAALPELRLLTYQMPDELLAVASGGEFDEFDL NEFFAATGTGEQAQFKHKDEVQKWLDILRGQYLPRASEYLKTGTRPPFPYADVRLLPYLQHSFWFLPSVAACQAMANLLA ERHNVFWHDYTVVVAAGAGAGIGLDALPPVRRAIGGGFDTKTITLSCGKLTTGVTVPQWSAILMLRNLQSPETYFQAAFR VQSPWVIANPEGDDPNAEVIVKPVCFVFDFAPTRALRQLSEYAIGLAPHEPNPEQAVADLVSFLPVLAYDGANMTQIDAG GILDIAMAGTSATLLARKWESALLVNVDNDTLRRVLNSPEALAAVERIEGWRALGDNIIETVINQSEKIKGLKGKAKERD LTPAEKKELSDEEKEYKNKRKQIQEKLIKFATRIPAFMYLTDFRENTLQDIITKLEPELFLTVTGLTVEDFHLLVRLKVF NTEQMNAAVFAFRRYEDASLRYAGIDSHPGLTHYGLYDTVVAREESLLRS >Mature_850_residues MDKPTTEQLLPPRPQARPRLYAYSIDDAAHAGLLKIGQTTRDVRQRVAEQLRTAAIKNYRIELDEDATRADGSIITDHEL RAALRRKGHEVVTLEWVRCTVADVRAVLHELRTGKPVSGARHQTFGLRQEQEEAVEKTLAYFRSIWAEDKDAAPRFLWNA KMRFGKTFTTYQLARRLGARRVLIVTFKPAVEDAWQTDLESHVDFEGWQYLSRKSERDPTQIDPHKPVVYFGSFQDLLGR DRQGNIKPKNEWIHTVNWDLVVFDEYHFGAWRDTARELFEGEEDAAKELQQEYAAGLETVNEDLGELSVKEAEFLPITTR AYLYLSGTPFRALSTGEFIEEQIFNWTYTDEQRAKGRFAEEHPGEKNPYAALPELRLLTYQMPDELLAVASGGEFDEFDL NEFFAATGTGEQAQFKHKDEVQKWLDILRGQYLPRASEYLKTGTRPPFPYADVRLLPYLQHSFWFLPSVAACQAMANLLA ERHNVFWHDYTVVVAAGAGAGIGLDALPPVRRAIGGGFDTKTITLSCGKLTTGVTVPQWSAILMLRNLQSPETYFQAAFR VQSPWVIANPEGDDPNAEVIVKPVCFVFDFAPTRALRQLSEYAIGLAPHEPNPEQAVADLVSFLPVLAYDGANMTQIDAG GILDIAMAGTSATLLARKWESALLVNVDNDTLRRVLNSPEALAAVERIEGWRALGDNIIETVINQSEKIKGLKGKAKERD LTPAEKKELSDEEKEYKNKRKQIQEKLIKFATRIPAFMYLTDFRENTLQDIITKLEPELFLTVTGLTVEDFHLLVRLKVF NTEQMNAAVFAFRRYEDASLRYAGIDSHPGLTHYGLYDTVVAREESLLRS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006935 [H]
Pfam domain/function: PF04851 ResIII [H]
EC number: NA
Molecular weight: Translated: 96366; Mature: 96366
Theoretical pI: Translated: 5.38; Mature: 5.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKPTTEQLLPPRPQARPRLYAYSIDDAAHAGLLKIGQTTRDVRQRVAEQLRTAAIKNYR CCCCCCCCCCCCCCCCCCEEEEEECCCHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHCCE IELDEDATRADGSIITDHELRAALRRKGHEVVTLEWVRCTVADVRAVLHELRTGKPVSGA EEECCCCCCCCCCEEEHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCC RHQTFGLRQEQEEAVEKTLAYFRSIWAEDKDAAPRFLWNAKMRFGKTFTTYQLARRLGAR CCHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCC RVLIVTFKPAVEDAWQTDLESHVDFEGWQYLSRKSERDPTQIDPHKPVVYFGSFQDLLGR EEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCEEEECCHHHHHCC DRQGNIKPKNEWIHTVNWDLVVFDEYHFGAWRDTARELFEGEEDAAKELQQEYAAGLETV CCCCCCCCCCCEEEEECCEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH NEDLGELSVKEAEFLPITTRAYLYLSGTPFRALSTGEFIEEQIFNWTYTDEQRAKGRFAE HHHHHHCCCCCCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCHHHHCCCCHH EHPGEKNPYAALPELRLLTYQMPDELLAVASGGEFDEFDLNEFFAATGTGEQAQFKHKDE HCCCCCCCCCCCCCCEEEEECCCHHHHEEECCCCCCCCCHHHHHEECCCCCCCCCCCHHH VQKWLDILRGQYLPRASEYLKTGTRPPFPYADVRLLPYLQHSFWFLPSVAACQAMANLLA HHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH ERHNVFWHDYTVVVAAGAGAGIGLDALPPVRRAIGGGFDTKTITLSCGKLTTGVTVPQWS HHCCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCEECCCCCCCHH AILMLRNLQSPETYFQAAFRVQSPWVIANPEGDDPNAEVIVKPVCFVFDFAPTRALRQLS HHHHHHCCCCHHHHHHHHHEECCCEEEECCCCCCCCCEEEEEEHHHHHCCCHHHHHHHHH EYAIGLAPHEPNPEQAVADLVSFLPVLAYDGANMTQIDAGGILDIAMAGTSATLLARKWE HHHEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEEEEECCCCHHHHHHHCC SALLVNVDNDTLRRVLNSPEALAAVERIEGWRALGDNIIETVINQSEKIKGLKGKAKERD CEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCC LTPAEKKELSDEEKEYKNKRKQIQEKLIKFATRIPAFMYLTDFRENTLQDIITKLEPELF CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEE LTVTGLTVEDFHLLVRLKVFNTEQMNAAVFAFRRYEDASLRYAGIDSHPGLTHYGLYDTV EEEECCCHHCEEEEEEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCEECCHHHHH VAREESLLRS HHHHHHHHCC >Mature Secondary Structure MDKPTTEQLLPPRPQARPRLYAYSIDDAAHAGLLKIGQTTRDVRQRVAEQLRTAAIKNYR CCCCCCCCCCCCCCCCCCEEEEEECCCHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHCCE IELDEDATRADGSIITDHELRAALRRKGHEVVTLEWVRCTVADVRAVLHELRTGKPVSGA EEECCCCCCCCCCEEEHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCC RHQTFGLRQEQEEAVEKTLAYFRSIWAEDKDAAPRFLWNAKMRFGKTFTTYQLARRLGAR CCHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCC RVLIVTFKPAVEDAWQTDLESHVDFEGWQYLSRKSERDPTQIDPHKPVVYFGSFQDLLGR EEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCEEEECCHHHHHCC DRQGNIKPKNEWIHTVNWDLVVFDEYHFGAWRDTARELFEGEEDAAKELQQEYAAGLETV CCCCCCCCCCCEEEEECCEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH NEDLGELSVKEAEFLPITTRAYLYLSGTPFRALSTGEFIEEQIFNWTYTDEQRAKGRFAE HHHHHHCCCCCCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCHHHHCCCCHH EHPGEKNPYAALPELRLLTYQMPDELLAVASGGEFDEFDLNEFFAATGTGEQAQFKHKDE HCCCCCCCCCCCCCCEEEEECCCHHHHEEECCCCCCCCCHHHHHEECCCCCCCCCCCHHH VQKWLDILRGQYLPRASEYLKTGTRPPFPYADVRLLPYLQHSFWFLPSVAACQAMANLLA HHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH ERHNVFWHDYTVVVAAGAGAGIGLDALPPVRRAIGGGFDTKTITLSCGKLTTGVTVPQWS HHCCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCEECCCCCCCHH AILMLRNLQSPETYFQAAFRVQSPWVIANPEGDDPNAEVIVKPVCFVFDFAPTRALRQLS HHHHHHCCCCHHHHHHHHHEECCCEEEECCCCCCCCCEEEEEEHHHHHCCCHHHHHHHHH EYAIGLAPHEPNPEQAVADLVSFLPVLAYDGANMTQIDAGGILDIAMAGTSATLLARKWE HHHEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEEEEECCCCHHHHHHHCC SALLVNVDNDTLRRVLNSPEALAAVERIEGWRALGDNIIETVINQSEKIKGLKGKAKERD CEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCC LTPAEKKELSDEEKEYKNKRKQIQEKLIKFATRIPAFMYLTDFRENTLQDIITKLEPELF CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEE LTVTGLTVEDFHLLVRLKVFNTEQMNAAVFAFRRYEDASLRYAGIDSHPGLTHYGLYDTV EEEECCCHHCEEEEEEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCEECCHHHHH VAREESLLRS HHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8948633 [H]