Click here to switch to the map view.

The map label for this gene is rsmE [H]

Identifier: 94984945

GI number: 94984945

Start: 898140

End: 898832

Strand: Reverse

Name: rsmE [H]

Synonym: Dgeo_0838

Alternate gene names: 94984945

Gene position: 898832-898140 (Counterclockwise)

Preceding gene: 94984946

Following gene: 94984944

Centisome position: 36.43

GC content: 73.16

Gene sequence:

>693_bases
ATGGCTCCTCACCGCGTTCGGGTGGACACCCTCGCGCCGGCAATGACCCTCGGCCCGCGCGAAACGCGGCACCTGCACGT
GCTGCGCCTGCGCGAGGGCGACGAGGTGCGCGTGTTCGATGGCCAGGGCACAGAGGCCGCCGCGACGCTCGCCCGCCTGG
AAGAGGCCCGCGCCGTCCTGACCCTGGGTGAACGCCTCAGCGGCGCCGCCGAGACGCCGCAGCCCGTCACGTTGGCGGTG
GCGCTGCTGAAGGGAGACAAGCTGGCCGACGTGGTGCGCGCCGCCACCGAACTCGGCGTGGCGCGGGTGCAACTGCTCGT
CACCCGCCACGCCGACGTGCGCGAGATCGGCGAGCAGAAACTCCAGCGGTTGCGCCGCGTCGCTGGAGAGGCCAGCAAGC
AGTCCCGACGCGCCGTCACGCCGGAAGTGCTGGCCCCGGTCCCCCTGGCCGAGCTGACTTGGGAAGGCCAGCTCTTTGTG
GCGCAGCCCGGCAGCGCTCAGCGCCTCACCGACCACCTGAGCTGGGACGCGCCCGTTACGGTGCTCACCGGACCGGAGGG
CGGTCTCTCGGACGCCGAGATCAGGGCGCTGACCTCCAGGGGGGCGGTCGCCGTGACGCTCGGCCCGCGCATCCTGAGGG
CGGAGACAGCGCCGGTCGCGCTGCTGGGAGCGCTGGTGGCAACGGGCGTTTAG

Upstream 100 bases:

>100_bases
CACGCGGCGCTGGACCGCGAGGGCTTTACGAACGTGCAGGAAACGCTGGACGGCGAGTGGGCGCTGGTGACCGCCCGCGC
GCCGCTCGGGTGAGGCGCAC

Downstream 100 bases:

>100_bases
AGGCTACGGCTCAAGCCTCACCGGTCCCGGTCATCCCCCTCCCTACAATGCCCCCATGCGGCCTTTCCTCCTCCGCCCAC
TGCTGCTGGCGGGTCTGCTG

Product: 16S ribosomal RNA methyltransferase RsmE

Products: NA

Alternate protein names: 16S rRNA m3U1498 methyltransferase [H]

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MAPHRVRVDTLAPAMTLGPRETRHLHVLRLREGDEVRVFDGQGTEAAATLARLEEARAVLTLGERLSGAAETPQPVTLAV
ALLKGDKLADVVRAATELGVARVQLLVTRHADVREIGEQKLQRLRRVAGEASKQSRRAVTPEVLAPVPLAELTWEGQLFV
AQPGSAQRLTDHLSWDAPVTVLTGPEGGLSDAEIRALTSRGAVAVTLGPRILRAETAPVALLGALVATGV

Sequences:

>Translated_230_residues
MAPHRVRVDTLAPAMTLGPRETRHLHVLRLREGDEVRVFDGQGTEAAATLARLEEARAVLTLGERLSGAAETPQPVTLAV
ALLKGDKLADVVRAATELGVARVQLLVTRHADVREIGEQKLQRLRRVAGEASKQSRRAVTPEVLAPVPLAELTWEGQLFV
AQPGSAQRLTDHLSWDAPVTVLTGPEGGLSDAEIRALTSRGAVAVTLGPRILRAETAPVALLGALVATGV
>Mature_229_residues
APHRVRVDTLAPAMTLGPRETRHLHVLRLREGDEVRVFDGQGTEAAATLARLEEARAVLTLGERLSGAAETPQPVTLAVA
LLKGDKLADVVRAATELGVARVQLLVTRHADVREIGEQKLQRLRRVAGEASKQSRRAVTPEVLAPVPLAELTWEGQLFVA
QPGSAQRLTDHLSWDAPVTVLTGPEGGLSDAEIRALTSRGAVAVTLGPRILRAETAPVALLGALVATGV

Specific function: Specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [H]

COG id: COG1385

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase RsmE family [H]

Homologues:

Organism=Escherichia coli, GI87082186, Length=208, Percent_Identity=28.3653846153846, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001206
- InterPro:   IPR015947
- InterPro:   IPR006700 [H]

Pfam domain/function: PF04452 Methyltrans_RNA [H]

EC number: =2.1.1.193 [H]

Molecular weight: Translated: 24423; Mature: 24292

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPHRVRVDTLAPAMTLGPRETRHLHVLRLREGDEVRVFDGQGTEAAATLARLEEARAVL
CCCCEEEHHHHCCHHCCCCCCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHH
TLGERLSGAAETPQPVTLAVALLKGDKLADVVRAATELGVARVQLLVTRHADVREIGEQK
HHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
LQRLRRVAGEASKQSRRAVTPEVLAPVPLAELTWEGQLFVAQPGSAQRLTDHLSWDAPVT
HHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHEEECCEEEEECCCCHHHHHHHCCCCCCEE
VLTGPEGGLSDAEIRALTSRGAVAVTLGPRILRAETAPVALLGALVATGV
EEECCCCCCCCHHHHEECCCCEEEEEECCEEEECCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
APHRVRVDTLAPAMTLGPRETRHLHVLRLREGDEVRVFDGQGTEAAATLARLEEARAVL
CCCEEEHHHHCCHHCCCCCCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHH
TLGERLSGAAETPQPVTLAVALLKGDKLADVVRAATELGVARVQLLVTRHADVREIGEQK
HHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
LQRLRRVAGEASKQSRRAVTPEVLAPVPLAELTWEGQLFVAQPGSAQRLTDHLSWDAPVT
HHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHEEECCEEEEECCCCHHHHHHHCCCCCCEE
VLTGPEGGLSDAEIRALTSRGAVAVTLGPRILRAETAPVALLGALVATGV
EEECCCCCCCCHHHHEECCCCEEEEEECCEEEECCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]