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The map label for this gene is amyD [H]

Identifier: 94984697

GI number: 94984697

Start: 628482

End: 629429

Strand: Reverse

Name: amyD [H]

Synonym: Dgeo_0590

Alternate gene names: 94984697

Gene position: 629429-628482 (Counterclockwise)

Preceding gene: 94984698

Following gene: 94984696

Centisome position: 25.51

GC content: 62.55

Gene sequence:

>948_bases
ATGACCACCACCCCCACCTCCACTCGGCCCGCCGTTCGGCGGAGCCGCGGCCTACAAGCCAGCCGAACGCGCGTTGCCCT
GCTGCTGCTGGTGCCCATGCTGCTGGTGCTGGCCGCCGTCGCGGGATACCCGCTCCTGCGAACCATCTACCTGTCCTTTA
CCGAATACAACATCCTGCAAGACCCGGCACCCAAATGGATCGGCCTGGGGAACTACTGGTTTACCACCGACGAGGGGGTA
GGCCTGGGCGTCCTCCAGACGCCAGAATGGTGGCAGTCCGTGTGGAACACGGTCCGGTTCACGGTCGGCAGCGTGCTGCT
CGAAACCGTGTTGGGGCTGGCCTTCGCGCTGATCATCAACTCCAAGATCAAGGGGCGGGGGCTGCTGCGCACCGCCATTC
TGGTGCCCTGGGCGATTCCGACGGTCGTCAGCGCGCAGATGTGGAACTGGATGTACAACGATTCGTTCGGGATCATCTCG
CAGTGGGGACAGCGGCTGGGCCTGCTGCAAACCGGCCAGTCCTTCCTGAGTAATCCCGACACAGCGATGGCCGCCCTGAT
TGCAGTGGACGTATGGAAGACCACGCCCTTTATGGCGCTGCTGCTGCTGGCGGGCCTGCAGACCATTCCCAGCGACATGT
ACGAGGCTGCCGACGTAGACGGCGCTTCGCCCTGGACCCAATTCTGGCGGCTCACGCTGCCGCTGCTGACGCCCGCCCTG
CTCGTCGCGCTGATTTTCCGCACGCTGGACGCGCTGCGCGTGTTCGACATGCCCTACATCGTGAAGGGAAACGCGCCTGA
AACGATGACCATGAGCATCTATGCCCGGCAGCAACTCATTCTCAATTCGCAGTTTGGCTTCGGCAGCGCCATCAGCGTCA
TGATCTTCCTGATCATCATGATTTTCACGGCGATCTACGTGACCAGCCTGCGGGTGAAGTTCGACTGA

Upstream 100 bases:

>100_bases
GGGCCGCGGCTGGTAAACGCGGGGGATCCAGGTCTTCCCGCCGTGCCCGAGTGCCCCCACCTGTGGGGCACTTTTTGTTC
TCTCTCCGGAGGCCCCAAGC

Downstream 100 bases:

>100_bases
GGGGAAAGCTATGAATGCCAAGAACCCCGCCGTCCGCACCCTGATGTTGGTTCTCTTCTGGGTGGTGGCGCTGATCGTGC
TCTTCTACGTGCTGTTTCCC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MTTTPTSTRPAVRRSRGLQASRTRVALLLLVPMLLVLAAVAGYPLLRTIYLSFTEYNILQDPAPKWIGLGNYWFTTDEGV
GLGVLQTPEWWQSVWNTVRFTVGSVLLETVLGLAFALIINSKIKGRGLLRTAILVPWAIPTVVSAQMWNWMYNDSFGIIS
QWGQRLGLLQTGQSFLSNPDTAMAALIAVDVWKTTPFMALLLLAGLQTIPSDMYEAADVDGASPWTQFWRLTLPLLTPAL
LVALIFRTLDALRVFDMPYIVKGNAPETMTMSIYARQQLILNSQFGFGSAISVMIFLIIMIFTAIYVTSLRVKFD

Sequences:

>Translated_315_residues
MTTTPTSTRPAVRRSRGLQASRTRVALLLLVPMLLVLAAVAGYPLLRTIYLSFTEYNILQDPAPKWIGLGNYWFTTDEGV
GLGVLQTPEWWQSVWNTVRFTVGSVLLETVLGLAFALIINSKIKGRGLLRTAILVPWAIPTVVSAQMWNWMYNDSFGIIS
QWGQRLGLLQTGQSFLSNPDTAMAALIAVDVWKTTPFMALLLLAGLQTIPSDMYEAADVDGASPWTQFWRLTLPLLTPAL
LVALIFRTLDALRVFDMPYIVKGNAPETMTMSIYARQQLILNSQFGFGSAISVMIFLIIMIFTAIYVTSLRVKFD
>Mature_314_residues
TTTPTSTRPAVRRSRGLQASRTRVALLLLVPMLLVLAAVAGYPLLRTIYLSFTEYNILQDPAPKWIGLGNYWFTTDEGVG
LGVLQTPEWWQSVWNTVRFTVGSVLLETVLGLAFALIINSKIKGRGLLRTAILVPWAIPTVVSAQMWNWMYNDSFGIISQ
WGQRLGLLQTGQSFLSNPDTAMAALIAVDVWKTTPFMALLLLAGLQTIPSDMYEAADVDGASPWTQFWRLTLPLLTPALL
VALIFRTLDALRVFDMPYIVKGNAPETMTMSIYARQQLILNSQFGFGSAISVMIFLIIMIFTAIYVTSLRVKFD

Specific function: Probably part of a binding-protein-dependent transport system starch degradation products. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=275, Percent_Identity=28, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1790465, Length=258, Percent_Identity=28.6821705426357, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1789861, Length=258, Percent_Identity=26.3565891472868, Blast_Score=84, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35076; Mature: 34945

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS00591 GLYCOSYL_HYDROL_F10 ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTTPTSTRPAVRRSRGLQASRTRVALLLLVPMLLVLAAVAGYPLLRTIYLSFTEYNILQ
CCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
DPAPKWIGLGNYWFTTDEGVGLGVLQTPEWWQSVWNTVRFTVGSVLLETVLGLAFALIIN
CCCCCEEECCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SKIKGRGLLRTAILVPWAIPTVVSAQMWNWMYNDSFGIISQWGQRLGLLQTGQSFLSNPD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCH
TAMAALIAVDVWKTTPFMALLLLAGLQTIPSDMYEAADVDGASPWTQFWRLTLPLLTPAL
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
LVALIFRTLDALRVFDMPYIVKGNAPETMTMSIYARQQLILNSQFGFGSAISVMIFLIIM
HHHHHHHHHHHHHHHCCCEEEECCCCCEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
IFTAIYVTSLRVKFD
HHHHHHHHHHHEECC
>Mature Secondary Structure 
TTTPTSTRPAVRRSRGLQASRTRVALLLLVPMLLVLAAVAGYPLLRTIYLSFTEYNILQ
CCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
DPAPKWIGLGNYWFTTDEGVGLGVLQTPEWWQSVWNTVRFTVGSVLLETVLGLAFALIIN
CCCCCEEECCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SKIKGRGLLRTAILVPWAIPTVVSAQMWNWMYNDSFGIISQWGQRLGLLQTGQSFLSNPD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCH
TAMAALIAVDVWKTTPFMALLLLAGLQTIPSDMYEAADVDGASPWTQFWRLTLPLLTPAL
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
LVALIFRTLDALRVFDMPYIVKGNAPETMTMSIYARQQLILNSQFGFGSAISVMIFLIIM
HHHHHHHHHHHHHHHCCCEEEECCCCCEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
IFTAIYVTSLRVKFD
HHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1874408 [H]