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The map label for this gene is yhcK [H]

Identifier: 94984673

GI number: 94984673

Start: 604158

End: 605207

Strand: Reverse

Name: yhcK [H]

Synonym: Dgeo_0566

Alternate gene names: 94984673

Gene position: 605207-604158 (Counterclockwise)

Preceding gene: 94984674

Following gene: 94984670

Centisome position: 24.53

GC content: 65.14

Gene sequence:

>1050_bases
ATGCTCTCCGCCTTCTTCGTCAACTTCTGCATCCTGGTGACATTCACCAGTATCGGCAGCTTGACCTACACCGGGCGGGA
AGATTACCACACGCTGCGGCGGGCGCTGCGCTACCTCATCAGCGTCCTGGCGGGGATCATCCTGGTGCTGTACGGCGTGC
CACTGATGGAGGGCGTGCGAGTGGACTTCCGAGGAGTCCCGATTCTGCTCGCAGGCCTCTTTGGTGGCCCTCTTCCCGCA
CTCGCCGTCGCCCTTCCGATCATGGCCTACCGGCTGTGGGCAGGCGGCACGGGGGCCCATGCCGGCGTCCTGTCTATTCT
CCTGGTGGCGCTCTGCGCCGGCATGCTTCATGCCCGTTTTGCCCAGAATCGGCTGACCTGGCGTGACGCTTGGGTCCCCT
TCGCGATCTTCGCGCTCGCGAACCTGTCCATTCTGCTGGTGCCCAGCGCCGGCCCCCAGCTGCTCAGAACCGCGTGGCTC
CCGGTGACCCTGCTCCAAGGCCTGGCCACGCTGGTGGCCTTTACCGTGGTCAGCCTCCGCTTTAGGACAGTCGGCCACAC
AGCGACCCTCCGAGGCATCGCCTACCTCGACGCGCTCACCAACCTCCACAACCGGCGCCAGTTCGACGAGGATCTGCCTG
CCTTTGGCATTGAGGAGGGGACCTTTCTGCTGCTGCTCGACCTCGACCGCTTCAAGGCCCTCAACGACTCGTGCGGTCAT
CCCTTCGGGGACCGGGTCTTGAGAGAACTCGCAGTGCTGCTGCAACAGGGCGTGCGGGGTACGGACCGGGTTTACCGCCT
GGGCGGAGAGGAGTTTGCTGTCCTGCTGCGTCAGACCTCGCCCACCGGTGCGGCCCGCGTGGCCGAGCGGCTGCGGTCGC
AGGTCCGGGAGCAACTGGGCACACGGGTCGGACGGCCTGACCTCACCATCACCATTTCGGCGGGTCTGACGCCCTGCACT
GCAGATCCAGATACGACCGTACGCACTGCCGATCACCTGCTCTACGAGGCAAAGCGCTCAGGACGTAACCGAATTGCAAC
GGCTGTCTGA

Upstream 100 bases:

>100_bases
CCCTCGCAGATCCCCCTGATCGGCAGGGGCTGCAACCGCATCCAGCGCCGCAGCAACCGTAAGATCCGTGTGAGCCAAAT
CGACTTACCCTCTGGAAGAG

Downstream 100 bases:

>100_bases
CTCCGCTTGACTTCAATCATGGCCAGAAGGCAACGGCTCGCGGGCCAGTTCGCGGTCTTCGCGAGTGAGCGCGAGGAAAG
CCAGCACCATCAGGAGCAGG

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MLSAFFVNFCILVTFTSIGSLTYTGREDYHTLRRALRYLISVLAGIILVLYGVPLMEGVRVDFRGVPILLAGLFGGPLPA
LAVALPIMAYRLWAGGTGAHAGVLSILLVALCAGMLHARFAQNRLTWRDAWVPFAIFALANLSILLVPSAGPQLLRTAWL
PVTLLQGLATLVAFTVVSLRFRTVGHTATLRGIAYLDALTNLHNRRQFDEDLPAFGIEEGTFLLLLDLDRFKALNDSCGH
PFGDRVLRELAVLLQQGVRGTDRVYRLGGEEFAVLLRQTSPTGAARVAERLRSQVREQLGTRVGRPDLTITISAGLTPCT
ADPDTTVRTADHLLYEAKRSGRNRIATAV

Sequences:

>Translated_349_residues
MLSAFFVNFCILVTFTSIGSLTYTGREDYHTLRRALRYLISVLAGIILVLYGVPLMEGVRVDFRGVPILLAGLFGGPLPA
LAVALPIMAYRLWAGGTGAHAGVLSILLVALCAGMLHARFAQNRLTWRDAWVPFAIFALANLSILLVPSAGPQLLRTAWL
PVTLLQGLATLVAFTVVSLRFRTVGHTATLRGIAYLDALTNLHNRRQFDEDLPAFGIEEGTFLLLLDLDRFKALNDSCGH
PFGDRVLRELAVLLQQGVRGTDRVYRLGGEEFAVLLRQTSPTGAARVAERLRSQVREQLGTRVGRPDLTITISAGLTPCT
ADPDTTVRTADHLLYEAKRSGRNRIATAV
>Mature_349_residues
MLSAFFVNFCILVTFTSIGSLTYTGREDYHTLRRALRYLISVLAGIILVLYGVPLMEGVRVDFRGVPILLAGLFGGPLPA
LAVALPIMAYRLWAGGTGAHAGVLSILLVALCAGMLHARFAQNRLTWRDAWVPFAIFALANLSILLVPSAGPQLLRTAWL
PVTLLQGLATLVAFTVVSLRFRTVGHTATLRGIAYLDALTNLHNRRQFDEDLPAFGIEEGTFLLLLDLDRFKALNDSCGH
PFGDRVLRELAVLLQQGVRGTDRVYRLGGEEFAVLLRQTSPTGAARVAERLRSQVREQLGTRVGRPDLTITISAGLTPCT
ADPDTTVRTADHLLYEAKRSGRNRIATAV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=166, Percent_Identity=36.144578313253, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI145693134, Length=158, Percent_Identity=37.3417721518987, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787056, Length=159, Percent_Identity=35.2201257861635, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI87081881, Length=164, Percent_Identity=38.4146341463415, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1787816, Length=154, Percent_Identity=37.012987012987, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787802, Length=209, Percent_Identity=32.0574162679426, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI87082007, Length=167, Percent_Identity=36.5269461077844, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1786584, Length=200, Percent_Identity=31.5, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788085, Length=157, Percent_Identity=34.3949044585987, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788381, Length=167, Percent_Identity=36.5269461077844, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87081974, Length=200, Percent_Identity=27, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1787541, Length=160, Percent_Identity=33.75, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI87081977, Length=165, Percent_Identity=29.0909090909091, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788956, Length=169, Percent_Identity=31.9526627218935, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 38087; Mature: 38087

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSAFFVNFCILVTFTSIGSLTYTGREDYHTLRRALRYLISVLAGIILVLYGVPLMEGVR
CCHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCE
VDFRGVPILLAGLFGGPLPALAVALPIMAYRLWAGGTGAHAGVLSILLVALCAGMLHARF
ECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
AQNRLTWRDAWVPFAIFALANLSILLVPSAGPQLLRTAWLPVTLLQGLATLVAFTVVSLR
HHCCCCHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRTVGHTATLRGIAYLDALTNLHNRRQFDEDLPAFGIEEGTFLLLLDLDRFKALNDSCGH
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHCCCCCC
PFGDRVLRELAVLLQQGVRGTDRVYRLGGEEFAVLLRQTSPTGAARVAERLRSQVREQLG
CHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
TRVGRPDLTITISAGLTPCTADPDTTVRTADHLLYEAKRSGRNRIATAV
HCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLSAFFVNFCILVTFTSIGSLTYTGREDYHTLRRALRYLISVLAGIILVLYGVPLMEGVR
CCHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCE
VDFRGVPILLAGLFGGPLPALAVALPIMAYRLWAGGTGAHAGVLSILLVALCAGMLHARF
ECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
AQNRLTWRDAWVPFAIFALANLSILLVPSAGPQLLRTAWLPVTLLQGLATLVAFTVVSLR
HHCCCCHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRTVGHTATLRGIAYLDALTNLHNRRQFDEDLPAFGIEEGTFLLLLDLDRFKALNDSCGH
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHCCCCCC
PFGDRVLRELAVLLQQGVRGTDRVYRLGGEEFAVLLRQTSPTGAARVAERLRSQVREQLG
CHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
TRVGRPDLTITISAGLTPCTADPDTTVRTADHLLYEAKRSGRNRIATAV
HCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]